Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0006149

Physical Location & Seq

Genomic Coordinates Forward (+)

8750075 .. 8751631

Gene Structure 1557 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g12550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGAAATGTCTAATACTCCTGAACATGCGAATGATGAGGTTTATATGATTCAAAACATGGAACAAGGCCTGCATTTTCCAAGTTCCTTTGAACAAGTTGAAGGTATGTACAATGAAGGAGCTCCTGAGTTTGTTGTTGACCAGGGCATGTATTATCCCGCTGCCACAAACTATGGGTATTACTGTACAGGATTTGAATCACCCGGTGAATTTGAGGACCACGGTAGGATTTTTGGCGTTGATGGTCCAGATATCCAGTACACGGGTGCACAGAATGAAAGTTTGCCTTTTGTATATTATACACCTAGCTATGGATATGCACAGTCTCCATACAACCCATACAATCCTTACATACCTGGTGCTATGATAGGCGCTGATGGCCAACAGTATACCATCCCCCCTTATCAGAACTCTGTCTCTTCACCTTCCTACATCCCTTTTGTTGTTCAACAAGATGCCATTCCCAACAGTTCACCTGACTCCTTGTTTGATAATGGAGCATCAGTTAATAGACCCGATGGAAGAGGGGTCAAATATAACTTAAATTCAGCTTCTGGAGGCTACCCTAACTCCTCGAAGTCCTCTTTAAATCAGATGAATCCCTTGACAAAGGTATCAGAAGGTCAAAGAGGTAATGGATCAAGCAAGCATGCTGTGACACATGGAGGTGTTTCTTCTGGTCGTTTTCCAACCCCAGCCTCGTCACATGTTAATCAGGTTAGAAGTGCATCTGGGTCGGTTTCGTCTGTGGATAACCTTCCAAATGGGAAAGTATTACCTAATCATTTGAAGGTGGAAATCCCCGTCACTACTGGCTTATCTAACTTTGGATCTAGTGCTCAAGGAAGGGGTGCTGCGGCTAAGTTTCGACCAAAATTTCATGTTGGTAGGGCCTTGAATGATGTGCATGGTGGCCTGGAGGCATTGGGTGAGCAGAATTGTGGTCCTAGAATCAACAGGTTAAAAAATCAACTAGCTGTGAAAGCCTATACGACCAAGGCAGGAGATCAGACGTGTGATGCACAAGGAAACATCATTATCCGTACTGATAAATATAACAAGGATCGATCTGCCCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YTH

Protein Analysis

360

Amino Acids

38.75

Weight (kDa)

5.99

Isoelectric Point (pI)

34.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006149)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48110 AT1G48110
fragaria_vesca	FvH4_4g21030 FvH4_4g21030
malus_domestica	MD13G1146000.v1.1 MD16G1140100.v1.1
prunus_persica	Prupe.1G109700_v2.0.a1 Prupe.1G109700_v2.0.a1 Prupe.1G109700_v2.0.a1 Prupe.1G109700_v2.0.a1 Prupe.1G109700_v2.0.a1
pyrus_communis	pycom13g12550 pycom13g12560 pycom16g12420
rosa_chinensis	RchiOBHm_Chr4g0426561
rosa_laevigata	RLG00000007290
rosa_multiflora	Rmu_sc0001821.1_g000008
rosa_roxburghii	Rroxscaffold_5G00368570
rosa_rugosa	Rorug04G0213100 Rorug04G0213200 Rorug04G0213300 Rorug04G0213400
rosa_samantha	Rh4AG268600 Rh4BG274900 Rh4CG289200 Rh4DG271700
rosa_wichuraiana	Rw4G023300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	389
AciI	CCGC	2 cut(s)	159, 857
AclWI	GGATC	3 cut(s)	646, 838, 1071
AcoI	YGGCCR	1 cut(s)	379
AcsI	RAATTY	3 cut(s)	209, 544, 875
AdeI	CACNNNGTG	1 cut(s)	206
AfaI	GTAC	4 cut(s)	110, 187, 260, 1045
AfiI	CCNNNNNNNGG	2 cut(s)	262, 311
AflIII	ACRYGT	2 cut(s)	706, 1013
AgsI	TTSAA	7 cut(s)	53, 92, 101, 197, 449, 790, 898
AjiI	CACGTC	1 cut(s)	1014
AjnI	CCWGG	3 cut(s)	141, 355, 915
AluBI	AGCT	4 cut(s)	122, 309, 551, 977
AluI	AGCT	4 cut(s)	122, 309, 551, 977
Alw21I	GWGCWC	3 cut(s)	124, 271, 841
Alw26I	GTCTC	2 cut(s)	330, 421
Alw44I	GTGCAC	1 cut(s)	267
AlwI	GGATC	3 cut(s)	646, 838, 1071
AlwNI	CAGNNNCTG	1 cut(s)	554
AoxI	GGCC	4 cut(s)	67, 379, 891, 913
ApaLI	GTGCAC	1 cut(s)	267
ApeKI	GCWGC	2 cut(s)	161, 854
ApoI	RAATTY	3 cut(s)	209, 544, 875
ArsI	GACNNNNNNTTYG	2 cut(s)	470, 502
AspLEI	GCGC	1 cut(s)	374
AspS9I	GGNCC	4 cut(s)	217, 245, 891, 944
AsuC2I	CCSGG	1 cut(s)	204
AsuHPI	GGTGA	5 cut(s)	192, 218, 414, 465, 941
AvaII	GGWCC	3 cut(s)	217, 245, 944
BaeGI	GKGCMC	1 cut(s)	271
BaeI	ACNNNNGTAYC	2 cut(s)	597, 630
BalI	TGGCCA	1 cut(s)	381
BanII	GRGCYC	1 cut(s)	124
Bbv12I	GWGCWC	3 cut(s)	124, 271, 841
BbvI	GCAGC	2 cut(s)	148, 841
BccI	CCATC	4 cut(s)	236, 371, 401, 512
BcgI	CGANNNNNNTGC	2 cut(s)	717, 751
BciT130I	CCWGG	3 cut(s)	143, 357, 917
BcnI	CCSGG	1 cut(s)	204
BcoDI	GTCTC	2 cut(s)	330, 421
BfaI	CTAG	4 cut(s)	306, 834, 948, 974
BfoI	RGCGCY	1 cut(s)	375
BisI	GCNGC	3 cut(s)	162, 855, 858
BlsI	GCNGC	3 cut(s)	163, 856, 859
Bme1390I	CCNGG	4 cut(s)	143, 204, 357, 917
Bme18I	GGWCC	3 cut(s)	217, 245, 944
BmgBI	CACGTC	1 cut(s)	1014
BmgT120I	GGNCC	4 cut(s)	217, 245, 891, 944
BmrFI	CCNGG	4 cut(s)	143, 204, 357, 917
BmsI	GCATC	4 cut(s)	445, 509, 737, 1009
BpmI	CTGGAG	2 cut(s)	576, 938
BpuEI	CTTGAG	1 cut(s)	825
BpuMI	CCSGG	1 cut(s)	204
Bsa29I	ATCGAT	1 cut(s)	1066
BsaBI	GATNNNNATC	1 cut(s)	196
BsaJI	CCNNGG	3 cut(s)	142, 220, 996
BsaXI	ACNNNNNCTCC	4 cut(s)	489, 519, 554, 584
Bsc4I	CCNNNNNNNGG	2 cut(s)	262, 311
Bse1I	ACTGG	2 cut(s)	256, 817
Bse8I	GATNNNNATC	1 cut(s)	196
BseBI	CCWGG	3 cut(s)	143, 357, 917
BseCI	ATCGAT	1 cut(s)	1066
BseDI	CCNNGG	3 cut(s)	142, 220, 996
BseGI	GGATG	2 cut(s)	393, 432
BseJI	GATNNNNATC	1 cut(s)	196
BseLI	CCNNNNNNNGG	2 cut(s)	262, 311
BseMII	CTCAG	1 cut(s)	117
BseNI	ACTGG	2 cut(s)	256, 817
BseRI	GAGGAG	1 cut(s)	562
BseSI	GKGCMC	1 cut(s)	271
BseXI	GCAGC	2 cut(s)	148, 841
BseYI	CCCAGC	1 cut(s)	694
BshFI	GGCC	4 cut(s)	69, 381, 893, 915
BshVI	ATCGAT	1 cut(s)	1066
BsiHKAI	GWGCWC	3 cut(s)	124, 271, 841
BsiSI	CCGG	1 cut(s)	204
BslI	CCNNNNNNNGG	2 cut(s)	262, 311
BsmAI	GTCTC	2 cut(s)	330, 421
BsnI	GGCC	4 cut(s)	69, 381, 893, 915
Bsp1286I	GDGCHC	3 cut(s)	124, 271, 841
Bsp1407I	TGTACA	2 cut(s)	108, 185
Bsp143I	GATC	5 cut(s)	638, 830, 1006, 1063, 1067
BspACI	CCGC	2 cut(s)	159, 857
BspANI	GGCC	4 cut(s)	69, 381, 893, 915
BspCNI	CTCAG	1 cut(s)	118
BspDI	ATCGAT	1 cut(s)	1066
BspPI	GGATC	3 cut(s)	646, 838, 1071
BsrGI	TGTACA	2 cut(s)	108, 185
BsrI	ACTGG	2 cut(s)	256, 817
BssECI	CCNNGG	3 cut(s)	142, 220, 996
BssMI	GATC	5 cut(s)	638, 830, 1006, 1063, 1067
BssNAI	GTATAC	1 cut(s)	390
BssT1I	CCWWGG	1 cut(s)	996
Bst1107I	GTATAC	1 cut(s)	390
Bst2UI	CCWGG	3 cut(s)	143, 357, 917
Bst4CI	ACNGT	5 cut(s)	185, 224, 324, 387, 470
Bst6I	CTCTTC	2 cut(s)	424, 517
BstAUI	TGTACA	2 cut(s)	108, 185
BstC8I	GCNNGC	3 cut(s)	71, 647, 651
BstDEI	CTNAG	2 cut(s)	126, 861
BstDSI	CCRYGG	1 cut(s)	220
BstF5I	GGATG	2 cut(s)	393, 432
BstH2I	RGCGCY	1 cut(s)	375
BstHHI	GCGC	1 cut(s)	374
BstKTI	GATC	5 cut(s)	641, 833, 1009, 1066, 1070
BstMAI	GTCTC	2 cut(s)	330, 421
BstMBI	GATC	5 cut(s)	638, 830, 1006, 1063, 1067
BstMWI	GCNNNNNNNGC	2 cut(s)	378, 983
BstNI	CCWGG	3 cut(s)	143, 357, 917
BstNSI	RCATGY	4 cut(s)	29, 151, 653, 710
BstSCI	CCNGG	4 cut(s)	141, 202, 355, 915
BstSLI	GKGCMC	1 cut(s)	271
BstV1I	GCAGC	2 cut(s)	148, 841
BstX2I	RGATCY	1 cut(s)	830
BstYI	RGATCY	1 cut(s)	830
BstZ17I	GTATAC	1 cut(s)	390
Bsu15I	ATCGAT	1 cut(s)	1066
BsuRI	GGCC	4 cut(s)	69, 381, 893, 915
BsuTUI	ATCGAT	1 cut(s)	1066
BtgI	CCRYGG	1 cut(s)	220
BtrI	CACGTC	1 cut(s)	1014
BtsCI	GGATG	2 cut(s)	393, 432
Cac8I	GCNNGC	3 cut(s)	71, 647, 651
CaiI	CAGNNNCTG	1 cut(s)	554
CfoI	GCGC	1 cut(s)	374
Cfr13I	GGNCC	4 cut(s)	217, 245, 891, 944
ClaI	ATCGAT	1 cut(s)	1066
CsiI	ACCWGGT	1 cut(s)	355
Csp6I	GTAC	4 cut(s)	109, 186, 259, 1044
CviAII	CATG	8 cut(s)	26, 58, 148, 650, 662, 707, 881, 908
CviQI	GTAC	4 cut(s)	109, 186, 259, 1044
DdeI	CTNAG	2 cut(s)	126, 861
DpnI	GATC	5 cut(s)	640, 832, 1008, 1065, 1069
DpnII	GATC	5 cut(s)	638, 830, 1006, 1063, 1067
DraI	TTTAAA	1 cut(s)	588
DraIII	CACNNNGTG	1 cut(s)	206
EaeI	YGGCCR	1 cut(s)	379
Eam1104I	CTCTTC	2 cut(s)	424, 517
EarI	CTCTTC	2 cut(s)	424, 517
Ecl136II	GAGCTC	1 cut(s)	122
Eco130I	CCWWGG	1 cut(s)	996
Eco147I	AGGCCT	1 cut(s)	69
Eco24I	GRGCYC	1 cut(s)	124
Eco32I	GATATC	1 cut(s)	253
Eco47I	GGWCC	3 cut(s)	217, 245, 944
Eco53kI	GAGCTC	1 cut(s)	122
EcoICRI	GAGCTC	1 cut(s)	122
EcoO109I	RGGNCCY	1 cut(s)	891
EcoRII	CCWGG	3 cut(s)	141, 355, 915
EcoRV	GATATC	1 cut(s)	253
EcoT14I	CCWWGG	1 cut(s)	996
EcoT38I	GRGCYC	1 cut(s)	124
ErhI	CCWWGG	1 cut(s)	996
FaeI	CATG	8 cut(s)	29, 61, 151, 653, 665, 710, 884, 911
FalI	AAGNNNNNCTT	2 cut(s)	271, 303
FatI	CATG	8 cut(s)	25, 57, 147, 649, 661, 706, 880, 907
FauI	CCCGC	1 cut(s)	166
FblI	GTMKAC	1 cut(s)	389
Fnu4HI	GCNGC	3 cut(s)	162, 855, 858
FokI	GGATG	2 cut(s)	380, 419
FriOI	GRGCYC	1 cut(s)	124
Fsp4HI	GCNGC	3 cut(s)	162, 855, 858
FspBI	CTAG	4 cut(s)	306, 834, 948, 974
GlaI	GCGC	1 cut(s)	373
GluI	GCNGC	3 cut(s)	162, 855, 858
GsaI	CCCAGC	1 cut(s)	698
GsuI	CTGGAG	2 cut(s)	576, 938
HaeII	RGCGCY	1 cut(s)	375
HaeIII	GGCC	4 cut(s)	69, 381, 893, 915
HapII	CCGG	1 cut(s)	204
HhaI	GCGC	1 cut(s)	374
Hin1II	CATG	8 cut(s)	29, 61, 151, 653, 665, 710, 884, 911
Hin6I	GCGC	1 cut(s)	372
HinP1I	GCGC	1 cut(s)	372
HincII	GTYRAC	1 cut(s)	139
HindII	GTYRAC	1 cut(s)	139
HinfI	GANTC	5 cut(s)	49, 197, 479, 598, 951
HpaII	CCGG	1 cut(s)	204
HphI	GGTGA	5 cut(s)	192, 218, 414, 465, 941
Hpy166II	GTNNAC	5 cut(s)	139, 261, 269, 390, 473
Hpy188I	TCNGA	4 cut(s)	408, 594, 619, 1011
Hpy188III	TCNNGA	4 cut(s)	20, 125, 248, 555
Hpy8I	GTNNAC	5 cut(s)	139, 261, 269, 390, 473
HpyAV	CCTTC	7 cut(s)	95, 110, 435, 614, 767, 784, 840
HpyCH4III	ACNGT	5 cut(s)	185, 224, 324, 387, 470
HpyCH4IV	ACGT	1 cut(s)	1013
HpyCH4V	TGCA	6 cut(s)	73, 269, 320, 728, 907, 1022
HpyF10VI	GCNNNNNNNGC	2 cut(s)	378, 983
HpyF3I	CTNAG	2 cut(s)	126, 861
HpySE526I	ACGT	1 cut(s)	1013
Hsp92II	CATG	8 cut(s)	29, 61, 151, 653, 665, 710, 884, 911
HspAI	GCGC	1 cut(s)	372
Kzo9I	GATC	5 cut(s)	638, 830, 1006, 1063, 1067
LmnI	GCTCC	3 cut(s)	119, 127, 497
Lsp1109I	GCAGC	2 cut(s)	148, 841
LweI	GCATC	4 cut(s)	445, 509, 737, 1009
MabI	ACCWGGT	1 cut(s)	355
MaeI	CTAG	4 cut(s)	306, 834, 948, 974
MaeII	ACGT	1 cut(s)	1013
MaeIII	GTNAC	3 cut(s)	655, 702, 805
MalI	GATC	5 cut(s)	640, 832, 1008, 1065, 1069
MboI	GATC	5 cut(s)	638, 830, 1006, 1063, 1067
MboII	GAAGA	3 cut(s)	411, 534, 666
MflI	RGATCY	1 cut(s)	830
MhlI	GDGCHC	3 cut(s)	124, 271, 841
MlsI	TGGCCA	1 cut(s)	381
MluCI	AATT	4 cut(s)	209, 544, 875, 937
MluNI	TGGCCA	1 cut(s)	381
MlyI	GAGTC	1 cut(s)	473
MmeI	TCCRAC	1 cut(s)	713
Mox20I	TGGCCA	1 cut(s)	381
MscI	TGGCCA	1 cut(s)	381
MseI	TTAA	5 cut(s)	507, 542, 587, 711, 962
MslI	CAYNNNNRTG	2 cut(s)	30, 666
Msp20I	TGGCCA	1 cut(s)	381
MspA1I	CMGCKG	1 cut(s)	161
MspI	CCGG	1 cut(s)	204
MspR9I	CCNGG	4 cut(s)	143, 204, 357, 917
MvaI	CCWGG	3 cut(s)	143, 357, 917
MwoI	GCNNNNNNNGC	2 cut(s)	378, 983
NciI	CCSGG	1 cut(s)	204
NdeII	GATC	5 cut(s)	638, 830, 1006, 1063, 1067
NlaIII	CATG	8 cut(s)	29, 61, 151, 653, 665, 710, 884, 911
NmuCI	GTSAC	3 cut(s)	655, 702, 805
NspI	RCATGY	4 cut(s)	29, 151, 653, 710
PaeI	GCATGC	1 cut(s)	653
PceI	AGGCCT	1 cut(s)	69
PciI	ACATGT	1 cut(s)	706
PcsI	WCGNNNNNNNCGW	1 cut(s)	1072
PfeI	GAWTC	4 cut(s)	49, 197, 598, 951
PkrI	GCNGC	3 cut(s)	163, 856, 859
PleI	GAGTC	1 cut(s)	473
PpsI	GAGTC	1 cut(s)	473
PscI	ACATGT	1 cut(s)	706
Psp124BI	GAGCTC	1 cut(s)	124
Psp6I	CCWGG	3 cut(s)	141, 355, 915
PspFI	CCCAGC	1 cut(s)	694
PspGI	CCWGG	3 cut(s)	141, 355, 915
PspPI	GGNCC	4 cut(s)	217, 245, 891, 944
PstNI	CAGNNNCTG	1 cut(s)	554
PsuI	RGATCY	1 cut(s)	830
RsaI	GTAC	4 cut(s)	110, 187, 260, 1045
RsaNI	GTAC	4 cut(s)	109, 186, 259, 1044
RseI	CAYNNNNRTG	2 cut(s)	30, 666
SacI	GAGCTC	1 cut(s)	124
SaqAI	TTAA	5 cut(s)	507, 542, 587, 711, 962
SatI	GCNGC	3 cut(s)	162, 855, 858
Sau3AI	GATC	5 cut(s)	638, 830, 1006, 1063, 1067
Sau96I	GGNCC	4 cut(s)	217, 245, 891, 944
SchI	GAGTC	1 cut(s)	473
ScrFI	CCNGG	4 cut(s)	143, 204, 357, 917
SduI	GDGCHC	3 cut(s)	124, 271, 841
SexAI	ACCWGGT	1 cut(s)	355
SfaNI	GCATC	4 cut(s)	445, 509, 737, 1009
SinI	GGWCC	3 cut(s)	217, 245, 944
SmiMI	CAYNNNNRTG	2 cut(s)	30, 666
SmlI	CTYRAG	1 cut(s)	840
SmoI	CTYRAG	1 cut(s)	840
SphI	GCATGC	1 cut(s)	653
Sse9I	AATT	4 cut(s)	209, 544, 875, 937
SseBI	AGGCCT	1 cut(s)	69
SsiI	CCGC	2 cut(s)	159, 857
SspMI	CTAG	4 cut(s)	306, 834, 948, 974
SstI	GAGCTC	1 cut(s)	124
StuI	AGGCCT	1 cut(s)	69
StyD4I	CCNGG	4 cut(s)	141, 202, 355, 915
StyI	CCWWGG	1 cut(s)	996
TaaI	ACNGT	5 cut(s)	185, 224, 324, 387, 470
TaiI	ACGT	1 cut(s)	1016
TaqI	TCGA	3 cut(s)	575, 868, 1066
TasI	AATT	4 cut(s)	209, 544, 875, 937
TatI	WGTACW	3 cut(s)	108, 185, 258
TauI	GCSGC	1 cut(s)	860
TfiI	GAWTC	4 cut(s)	49, 197, 598, 951
Tru1I	TTAA	5 cut(s)	507, 542, 587, 711, 962
Tru9I	TTAA	5 cut(s)	507, 542, 587, 711, 962
TseFI	GTSAC	3 cut(s)	655, 702, 805
TseI	GCWGC	2 cut(s)	161, 854
Tsp45I	GTSAC	3 cut(s)	655, 702, 805
TspDTI	ATGAA	4 cut(s)	129, 291, 611, 869
TspGWI	ACGGA	1 cut(s)	1031
VneI	GTGCAC	1 cut(s)	267
VpaK11BI	GGWCC	3 cut(s)	217, 245, 944
XapI	RAATTY	3 cut(s)	209, 544, 875
XceI	RCATGY	4 cut(s)	29, 151, 653, 710
XmiI	GTMKAC	1 cut(s)	389
XspI	CTAG	4 cut(s)	306, 834, 948, 974

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.