Rorug04G0213400

YT521-B-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0006149
Physical Location & Seq
Forward (+)
37050984 .. 37053047
2064 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0213400.1

Sequence Viewer

Length: 1029 bp
ATGTCATTTCTTCTTCCATGGTTAGCTTACTATTCATTTGTTGCCATCTTGCTAGGGATTGGATTATTAGGGCAACTAGGTGTAGATGGCCAGGTCTATAAGTTGTACGGCCAAAAGAAATTGGCTACTTACACCATCACCGTAGATCAATCCGGCCAAGGAAACTTCACCAAAATACAATCTGCCATTGATGCTGTTCCTTCAAACAACAAGCATTGGGTTTGCATCAAGATCTCCGCCGGCACCTATAGGGAGAAGGTGAAAATCCCTTTTGATAAGCCGTACATACTTCTGAAAGGAGAAAACAAGCGACAAACACAAATTGTTTGGGATGATATTGGCCCTGTTGACAAAAGTGCCACTTTCACTTCTGAAGCCCCTAGTATCACTGTCAAATCCATCACTTTTGCTAATTCATACAACAATCCTTTTAATAGCAATCGTCAAATTACACAAGCATTGGCAGCGATGATAAGTGGTGACAAAACTTCCTTCTATAAATGTGGATTCTTTGGGTTTCAAGACACTTTGTGGGCGGTTGAAGGACGCCACTTTTACAAGCATTGCACTATCCAAGGTGCTATTGATTTTATCTTTGGCCATGCCCAGGCCATTTTCCAGGGATGCTCCATATCAGTGGTTGCGGGAAATCTGCAGCCCGGTGGGATAGGATACATCACAGCACAGGGGAGAGAACAGCCAAATGAACCTGGTGCTTTTATTTTCAAGAATTGCAGGGTGCATGGTACTGGTTTAACCTATTTGGGAAGGGCATGGAGACTGTACTCGAGGGTCATTTTCTACGATTCCAACTTATCAGACATTGTAGTCCCTCAGGGTTGGGATGGTTGGCAGGCTCTTGGCCATGAGGACCAATTGACATTTGCCGAGTATGGGTGCTATGGTCCAGGAGCCGACACTTCGAAGCGTGTGAGTTGGGAAAAGAAGCTTAGCCCTAATATCGTGCAACAGTTTACTAGCTTGAATTTCATTGATTCTGATGGATGGCTCATTGACCAGCCTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YTH

Protein Analysis

342

Amino Acids

38.08

Weight (kDa)

8.39

Isoelectric Point (pI)

29.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pectinesterase PF01095 46 - 333 4.7e-69 Pectinesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 827
AccB1I GGYRCC 1 cut(s) 242
AciI CCGC 3 cut(s) 237, 536, 644
AcoI YGGCCR 5 cut(s) 88, 109, 154, 598, 862
AcsI RAATTY 1 cut(s) 985
AcuI CTGAAG 1 cut(s) 393
AcyI GRCGYC 1 cut(s) 547
AdeI CACNNNGTG 1 cut(s) 531
AfaI GTAC 4 cut(s) 107, 284, 748, 785
AfiI CCNNNNNNNGG 2 cut(s) 607, 894
AgsI TTSAA 5 cut(s) 204, 521, 542, 727, 985
AjnI CCWGG 5 cut(s) 90, 606, 618, 709, 907
AluBI AGCT 3 cut(s) 26, 949, 981
AluI AGCT 3 cut(s) 26, 949, 981
Alw26I GTCTC 1 cut(s) 772
Ama87I CYCGRG 1 cut(s) 787
AoxI GGCC 7 cut(s) 88, 109, 154, 340, 598, 609, 862
ApeKI GCWGC 2 cut(s) 464, 655
ApoI RAATTY 1 cut(s) 985
AspS9I GGNCC 3 cut(s) 341, 871, 905
AsuC2I CCSGG 1 cut(s) 660
AsuHPI GGTGA 4 cut(s) 130, 160, 271, 491
AsuII TTCGAA 1 cut(s) 923
AvaI CYCGRG 1 cut(s) 787
AvaII GGWCC 2 cut(s) 871, 905
AxyI CCTNAGG 1 cut(s) 834
BalI TGGCCA 3 cut(s) 90, 600, 864
BanI GGYRCC 1 cut(s) 242
BbvI GCAGC 2 cut(s) 476, 667
BccI CCATC 7 cut(s) 53, 80, 143, 407, 839, 995, 999
BceAI ACGGC 2 cut(s) 124, 265
BciT130I CCWGG 5 cut(s) 92, 608, 620, 711, 909
BciVI GTATCC 1 cut(s) 665
BcnI CCSGG 1 cut(s) 660
BcoDI GTCTC 1 cut(s) 772
BfaI CTAG 4 cut(s) 53, 77, 381, 978
BfmI CTRYAG 2 cut(s) 247, 653
BfuI GTATCC 1 cut(s) 665
BglII AGATCT 1 cut(s) 231
BisI GCNGC 2 cut(s) 465, 656
BlpI GCTNAGC 1 cut(s) 950
BlsI GCNGC 2 cut(s) 466, 657
Bme1390I CCNGG 6 cut(s) 92, 608, 620, 660, 711, 909
Bme18I GGWCC 2 cut(s) 871, 905
BmeT110I CYCGRG 1 cut(s) 787
BmgT120I GGNCC 3 cut(s) 341, 871, 905
BmiI GGNNCC 2 cut(s) 244, 913
BmrFI CCNGG 6 cut(s) 92, 608, 620, 660, 711, 909
BmsI GCATC 3 cut(s) 181, 234, 614
Bpu1102I GCTNAGC 1 cut(s) 950
Bpu14I TTCGAA 1 cut(s) 923
BpuMI CCSGG 1 cut(s) 660
BsaHI GRCGYC 1 cut(s) 547
BsaJI CCNNGG 5 cut(s) 17, 157, 574, 606, 619
Bsc4I CCNNNNNNNGG 2 cut(s) 607, 894
Bse118I RCCGGY 1 cut(s) 239
Bse1I ACTGG 1 cut(s) 754
Bse21I CCTNAGG 1 cut(s) 834
Bse3DI GCAATG 1 cut(s) 562
BseBI CCWGG 5 cut(s) 92, 608, 620, 711, 909
BseDI CCNNGG 5 cut(s) 17, 157, 574, 606, 619
BseGI GGATG 4 cut(s) 337, 629, 850, 1010
BseLI CCNNNNNNNGG 2 cut(s) 607, 894
BseMI GCAATG 1 cut(s) 562
BseMII CTCAG 1 cut(s) 848
BseNI ACTGG 1 cut(s) 754
BseXI GCAGC 2 cut(s) 476, 667
BshFI GGCC 7 cut(s) 90, 111, 156, 342, 600, 611, 864
BshNI GGYRCC 1 cut(s) 242
BsiHKCI CYCGRG 1 cut(s) 787
BsiSI CCGG 3 cut(s) 153, 240, 660
BslFI GGGAC 1 cut(s) 815
BslI CCNNNNNNNGG 2 cut(s) 607, 894
BsmAI GTCTC 1 cut(s) 772
BsmFI GGGAC 1 cut(s) 815
BsnI GGCC 7 cut(s) 90, 111, 156, 342, 600, 611, 864
BsoBI CYCGRG 1 cut(s) 787
Bsp119I TTCGAA 1 cut(s) 923
Bsp143I GATC 2 cut(s) 145, 231
Bsp1720I GCTNAGC 1 cut(s) 950
Bsp19I CCATGG 1 cut(s) 17
BspACI CCGC 3 cut(s) 237, 536, 644
BspANI GGCC 7 cut(s) 90, 111, 156, 342, 600, 611, 864
BspCNI CTCAG 1 cut(s) 847
BspLI GGNNCC 2 cut(s) 244, 913
BspMAI CTGCAG 1 cut(s) 657
BspT104I TTCGAA 1 cut(s) 923
BspT107I GGYRCC 1 cut(s) 242
BsrDI GCAATG 1 cut(s) 562
BsrFI RCCGGY 1 cut(s) 239
BsrI ACTGG 1 cut(s) 754
BssAI RCCGGY 1 cut(s) 239
BssECI CCNNGG 5 cut(s) 17, 157, 574, 606, 619
BssMI GATC 2 cut(s) 145, 231
BssNI GRCGYC 1 cut(s) 547
BssT1I CCWWGG 3 cut(s) 17, 157, 574
Bst2UI CCWGG 5 cut(s) 92, 608, 620, 711, 909
Bst4CI ACNGT 4 cut(s) 142, 391, 783, 972
BstACI GRCGYC 1 cut(s) 547
BstBI TTCGAA 1 cut(s) 923
BstC8I GCNNGC 2 cut(s) 241, 855
BstDEI CTNAG 2 cut(s) 834, 950
BstDSI CCRYGG 1 cut(s) 17
BstF5I GGATG 4 cut(s) 337, 629, 850, 1010
BstKTI GATC 2 cut(s) 148, 234
BstMAI GTCTC 1 cut(s) 772
BstMBI GATC 2 cut(s) 145, 231
BstMWI GCNNNNNNNGC 2 cut(s) 191, 464
BstNI CCWGG 5 cut(s) 92, 608, 620, 711, 909
BstSCI CCNGG 6 cut(s) 90, 606, 618, 658, 709, 907
BstSFI CTRYAG 2 cut(s) 247, 653
BstV1I GCAGC 2 cut(s) 476, 667
BstX2I RGATCY 1 cut(s) 231
BstXI CCANNNNNNTGG 1 cut(s) 637
BstYI RGATCY 1 cut(s) 231
Bsu36I CCTNAGG 1 cut(s) 834
BsuI GTATCC 1 cut(s) 665
BsuRI GGCC 7 cut(s) 90, 111, 156, 342, 600, 611, 864
BtgI CCRYGG 1 cut(s) 17
BtgZI GCGATG 1 cut(s) 482
BtsCI GGATG 4 cut(s) 337, 629, 850, 1010
BtsIMutI CAGTG 2 cut(s) 387, 642
Cac8I GCNNGC 2 cut(s) 241, 855
Cfr10I RCCGGY 1 cut(s) 239
Cfr13I GGNCC 3 cut(s) 341, 871, 905
CseI GACGC 1 cut(s) 555
CsiI ACCWGGT 1 cut(s) 709
Csp6I GTAC 4 cut(s) 106, 283, 747, 784
CviAII CATG 5 cut(s) 18, 602, 743, 774, 866
CviQI GTAC 4 cut(s) 106, 283, 747, 784
DdeI CTNAG 2 cut(s) 834, 950
DpnI GATC 2 cut(s) 147, 233
DpnII GATC 2 cut(s) 145, 231
DraIII CACNNNGTG 1 cut(s) 531
DrdI GACNNNNNNGTC 1 cut(s) 827
DseDI GACNNNNNNGTC 1 cut(s) 827
EaeI YGGCCR 5 cut(s) 88, 109, 154, 598, 862
EciI GGCGGA 1 cut(s) 226
Eco130I CCWWGG 3 cut(s) 17, 157, 574
Eco47I GGWCC 2 cut(s) 871, 905
Eco57I CTGAAG 1 cut(s) 393
Eco81I CCTNAGG 1 cut(s) 834
Eco88I CYCGRG 1 cut(s) 787
EcoRII CCWGG 5 cut(s) 90, 606, 618, 709, 907
EcoT14I CCWWGG 3 cut(s) 17, 157, 574
ErhI CCWWGG 3 cut(s) 17, 157, 574
FaeI CATG 5 cut(s) 21, 605, 746, 777, 869
FalI AAGNNNNNCTT 2 cut(s) 346, 378
FaqI GGGAC 1 cut(s) 815
FatI CATG 5 cut(s) 17, 601, 742, 773, 865
FauI CCCGC 1 cut(s) 637
Fnu4HI GCNGC 2 cut(s) 465, 656
FokI GGATG 4 cut(s) 344, 636, 857, 1017
Fsp4HI GCNGC 2 cut(s) 465, 656
FspBI CTAG 4 cut(s) 53, 77, 381, 978
GluI GCNGC 2 cut(s) 465, 656
HaeIII GGCC 7 cut(s) 90, 111, 156, 342, 600, 611, 864
HapII CCGG 3 cut(s) 153, 240, 660
HgaI GACGC 1 cut(s) 555
Hin1I GRCGYC 1 cut(s) 547
Hin1II CATG 5 cut(s) 21, 605, 746, 777, 869
HincII GTYRAC 1 cut(s) 349
HindII GTYRAC 1 cut(s) 349
HindIII AAGCTT 1 cut(s) 947
HinfI GANTC 3 cut(s) 507, 806, 995
HpaII CCGG 3 cut(s) 153, 240, 660
HphI GGTGA 4 cut(s) 130, 160, 271, 491
Hpy166II GTNNAC 2 cut(s) 349, 975
Hpy188I TCNGA 4 cut(s) 294, 373, 820, 1000
Hpy188III TCNNGA 3 cut(s) 229, 521, 727
Hpy8I GTNNAC 2 cut(s) 349, 975
HpyAV CCTTC 5 cut(s) 210, 250, 502, 536, 762
HpyCH4III ACNGT 4 cut(s) 142, 391, 783, 972
HpyCH4V TGCA 6 cut(s) 225, 567, 655, 735, 742, 967
HpyF10VI GCNNNNNNNGC 2 cut(s) 191, 464
HpyF3I CTNAG 2 cut(s) 834, 950
Hsp92I GRCGYC 1 cut(s) 547
Hsp92II CATG 5 cut(s) 21, 605, 746, 777, 869
KroI GCCGGC 1 cut(s) 239
KroNI GCCGGC 1 cut(s) 241
Kzo9I GATC 2 cut(s) 145, 231
LmnI GCTCC 2 cut(s) 632, 911
Lsp1109I GCAGC 2 cut(s) 476, 667
LweI GCATC 3 cut(s) 181, 234, 614
MabI ACCWGGT 1 cut(s) 709
MaeI CTAG 4 cut(s) 53, 77, 381, 978
MaeIII GTNAC 1 cut(s) 479
MalI GATC 2 cut(s) 147, 233
MboI GATC 2 cut(s) 145, 231
MboII GAAGA 1 cut(s) 5
MfeI CAATTG 1 cut(s) 875
MflI RGATCY 1 cut(s) 231
MlsI TGGCCA 3 cut(s) 90, 600, 864
MluCI AATT 7 cut(s) 119, 321, 412, 447, 730, 875, 985
MluNI TGGCCA 3 cut(s) 90, 600, 864
MmeI TCCRAC 1 cut(s) 834
MnlI CCTC 3 cut(s) 783, 843, 862
Mox20I TGGCCA 3 cut(s) 90, 600, 864
MroNI GCCGGC 1 cut(s) 239
MscI TGGCCA 3 cut(s) 90, 600, 864
MseI TTAA 2 cut(s) 432, 755
MslI CAYNNNNRTG 1 cut(s) 635
Msp20I TGGCCA 3 cut(s) 90, 600, 864
MspI CCGG 3 cut(s) 153, 240, 660
MspR9I CCNGG 6 cut(s) 92, 608, 620, 660, 711, 909
MunI CAATTG 1 cut(s) 875
MvaI CCWGG 5 cut(s) 92, 608, 620, 711, 909
MwoI GCNNNNNNNGC 2 cut(s) 191, 464
NaeI GCCGGC 1 cut(s) 241
NciI CCSGG 1 cut(s) 660
NcoI CCATGG 1 cut(s) 17
NdeII GATC 2 cut(s) 145, 231
NgoMIV GCCGGC 1 cut(s) 239
NlaIII CATG 5 cut(s) 21, 605, 746, 777, 869
NlaIV GGNNCC 2 cut(s) 244, 913
NmeAIII GCCGAG 1 cut(s) 913
NmuCI GTSAC 1 cut(s) 479
NspV TTCGAA 1 cut(s) 923
PaeR7I CTCGAG 1 cut(s) 787
PdiI GCCGGC 1 cut(s) 241
PfeI GAWTC 3 cut(s) 507, 806, 995
PfoI TCCNGGA 1 cut(s) 907
PkrI GCNGC 2 cut(s) 466, 657
Psp6I CCWGG 5 cut(s) 90, 606, 618, 709, 907
PspGI CCWGG 5 cut(s) 90, 606, 618, 709, 907
PspN4I GGNNCC 2 cut(s) 244, 913
PspPI GGNCC 3 cut(s) 341, 871, 905
PspXI VCTCGAGB 1 cut(s) 787
PstI CTGCAG 1 cut(s) 657
PsuI RGATCY 1 cut(s) 231
RsaI GTAC 4 cut(s) 107, 284, 748, 785
RsaNI GTAC 4 cut(s) 106, 283, 747, 784
RseI CAYNNNNRTG 1 cut(s) 635
SaqAI TTAA 2 cut(s) 432, 755
SatI GCNGC 2 cut(s) 465, 656
Sau3AI GATC 2 cut(s) 145, 231
Sau96I GGNCC 3 cut(s) 341, 871, 905
ScrFI CCNGG 6 cut(s) 92, 608, 620, 660, 711, 909
SexAI ACCWGGT 1 cut(s) 709
SfaNI GCATC 3 cut(s) 181, 234, 614
SfcI CTRYAG 2 cut(s) 247, 653
Sfr274I CTCGAG 1 cut(s) 787
SfuI TTCGAA 1 cut(s) 923
SinI GGWCC 2 cut(s) 871, 905
SlaI CTCGAG 1 cut(s) 787
SmiMI CAYNNNNRTG 1 cut(s) 635
SmlI CTYRAG 1 cut(s) 787
SmoI CTYRAG 1 cut(s) 787
Sse9I AATT 7 cut(s) 119, 321, 412, 447, 730, 875, 985
SsiI CCGC 3 cut(s) 237, 536, 644
SspMI CTAG 4 cut(s) 53, 77, 381, 978
StyD4I CCNGG 6 cut(s) 90, 606, 618, 658, 709, 907
StyI CCWWGG 3 cut(s) 17, 157, 574
TaaI ACNGT 4 cut(s) 142, 391, 783, 972
TaqI TCGA 2 cut(s) 788, 923
TasI AATT 7 cut(s) 119, 321, 412, 447, 730, 875, 985
TatI WGTACW 1 cut(s) 783
TfiI GAWTC 3 cut(s) 507, 806, 995
Tru1I TTAA 2 cut(s) 432, 755
Tru9I TTAA 2 cut(s) 432, 755
TscAI CASTG 2 cut(s) 394, 642
TseFI GTSAC 1 cut(s) 479
TseI GCWGC 2 cut(s) 464, 655
Tsp45I GTSAC 1 cut(s) 479
TspDTI ATGAA 4 cut(s) 24, 405, 720, 979
TspRI CASTG 2 cut(s) 394, 642
VpaK11BI GGWCC 2 cut(s) 871, 905
XapI RAATTY 1 cut(s) 985
XhoI CTCGAG 1 cut(s) 787
XspI CTAG 4 cut(s) 53, 77, 381, 978
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.