Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0006149

Physical Location & Seq

Genomic Coordinates Forward (+)

8751998 .. 8753175

Gene Structure 1178 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g12560.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGGTGGCCCGGTTGACTTTCACAAGGATATGGACTTTTGGCAGCAAGATAAATGGAGTGGGAGCTTCCCTGTTAAGTGGCACATTATTAAAGATGTTCCAAATACCAGTTTCAGGCACATTGTATTGGAGAACAATGAAAACAAGCCGGTGACTAATAGCAGGGATACGCAAGAGATTATGTATAAGAAAGGCTTGGAGATGCTGAAAATATTCAAGAATCACACATTGAAGACATCTTTACTTGATGACTTTATGTACTATGAGGACCGTCAGAAAATCATGCAGGAAGAGAGAGGCAGGTTACTTAGAAGCTTTGAAAGTCCATTTTTAGTACCTGGGCTGGGTCCTCCCCGCAAGCTGCACAACTCTGTGGGTGAGCTGCCTCGTATTAAGGACGAAAAAGTCACCAAACTTAATGATGATGTTAACAACGCGAAAAAGACTTTGGTCTCTACTTCTGAGCGGGTTTCCTCTAACTCAAGTGTTATCAACGCCAGTATCAAGAAAGAAGATGTTGAGCGGAAGGCAATTGAAGCAAAAGATGATGCCGTGTCTACCTTAAAAATTGATTCCCTCACTATTACTCCAAAGCAGGCAGGATCAAAATCTTCAGCTGCTGCTGTTACTAACACCAGAAAGGTTGATGTTGTCACTGTAGGCTCAATGCCCGTAAGAGTTAACGGGTATTCTGAATCCTTGGGTAATTTAACAGTTGGAACAATCCCTCTGGATCCTAGAGCGTTACAGCTAGAGAAGGGCGGGTCTATTATCAAAAATGCAGCTCAACCTCAAGAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YTH

Protein Analysis

268

Amino Acids

29.91

Weight (kDa)

9.27

Isoelectric Point (pI)

35.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006149)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48110 AT1G48110
fragaria_vesca	FvH4_4g21030 FvH4_4g21030
malus_domestica	MD13G1146000.v1.1 MD16G1140100.v1.1
prunus_persica	Prupe.1G109700_v2.0.a1 Prupe.1G109700_v2.0.a1 Prupe.1G109700_v2.0.a1 Prupe.1G109700_v2.0.a1 Prupe.1G109700_v2.0.a1
pyrus_communis	pycom13g12550 pycom13g12560 pycom16g12420
rosa_chinensis	RchiOBHm_Chr4g0426561
rosa_laevigata	RLG00000007290
rosa_multiflora	Rmu_sc0001821.1_g000008
rosa_roxburghii	Rroxscaffold_5G00368570
rosa_rugosa	Rorug04G0213100 Rorug04G0213200 Rorug04G0213300 Rorug04G0213400
rosa_samantha	Rh4AG268600 Rh4BG274900 Rh4CG289200 Rh4DG271700
rosa_wichuraiana	Rw4G023300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	404
Acc36I	ACCTGC	1 cut(s)	291
AccBSI	CCGCTC	2 cut(s)	466, 523
AccI	GTMKAC	1 cut(s)	557
AccII	CGCG	1 cut(s)	437
AciI	CCGC	4 cut(s)	355, 466, 523, 762
AclWI	GGATC	3 cut(s)	610, 728, 741
AcuI	CTGAAG	1 cut(s)	597
AfaI	GTAC	2 cut(s)	260, 336
AfiI	CCNNNNNNNGG	2 cut(s)	114, 344
AgsI	TTSAA	4 cut(s)	217, 232, 320, 536
AjnI	CCWGG	1 cut(s)	337
AjuI	GAANNNNNNNTTGG	2 cut(s)	431, 463
AluBI	AGCT	7 cut(s)	66, 315, 361, 382, 617, 751, 785
AluI	AGCT	7 cut(s)	66, 315, 361, 382, 617, 751, 785
Alw26I	GTCTC	1 cut(s)	457
AlwI	GGATC	3 cut(s)	610, 728, 741
AlwNI	CAGNNNCTG	1 cut(s)	620
AoxI	GGCC	1 cut(s)	7
ApeKI	GCWGC	6 cut(s)	43, 361, 382, 617, 620, 782
Asp700I	GAANNNNTTC	1 cut(s)	212
AspS9I	GGNCC	3 cut(s)	8, 268, 347
AsuC2I	CCSGG	1 cut(s)	11
AsuHPI	GGTGA	3 cut(s)	163, 389, 400
AvaII	GGWCC	2 cut(s)	268, 347
BaeI	ACNNNNGTAYC	2 cut(s)	484, 517
BamHI	GGATCC	1 cut(s)	733
BbsI	GAAGAC	1 cut(s)	239
BbvI	GCAGC	6 cut(s)	55, 348, 369, 604, 607, 794
BceAI	ACGGC	1 cut(s)	536
BciT130I	CCWGG	1 cut(s)	339
BciVI	GTATCC	1 cut(s)	160
BcnI	CCSGG	1 cut(s)	11
BcoDI	GTCTC	1 cut(s)	457
BfaI	CTAG	2 cut(s)	738, 752
BfmI	CTRYAG	1 cut(s)	657
BfuAI	ACCTGC	1 cut(s)	291
BfuI	GTATCC	1 cut(s)	160
BisI	GCNGC	6 cut(s)	44, 362, 383, 618, 621, 783
BlsI	GCNGC	6 cut(s)	45, 363, 384, 619, 622, 784
Bme1390I	CCNGG	2 cut(s)	11, 339
Bme18I	GGWCC	2 cut(s)	268, 347
BmgT120I	GGNCC	3 cut(s)	8, 268, 347
BmiI	GGNNCC	2 cut(s)	348, 735
BmrFI	CCNGG	2 cut(s)	11, 339
BmsI	GCATC	2 cut(s)	192, 538
BoxI	GACNNNNGTC	1 cut(s)	449
BpiI	GAAGAC	1 cut(s)	239
BpuEI	CTTGAG	2 cut(s)	466, 777
BpuMI	CCSGG	1 cut(s)	11
BsaBI	GATNNNNATC	1 cut(s)	607
BsaI	GGTCTC	1 cut(s)	457
BsaJI	CCNNGG	2 cut(s)	338, 699
BsaXI	ACNNNNNCTCC	2 cut(s)	571, 601
Bsc4I	CCNNNNNNNGG	2 cut(s)	114, 344
Bse118I	RCCGGY	1 cut(s)	148
Bse1I	ACTGG	2 cut(s)	108, 498
Bse8I	GATNNNNATC	1 cut(s)	607
BseBI	CCWGG	1 cut(s)	339
BseDI	CCNNGG	2 cut(s)	338, 699
BseJI	GATNNNNATC	1 cut(s)	607
BseLI	CCNNNNNNNGG	2 cut(s)	114, 344
BseMII	CTCAG	1 cut(s)	453
BseNI	ACTGG	2 cut(s)	108, 498
BseXI	GCAGC	6 cut(s)	55, 348, 369, 604, 607, 794
BseYI	CCCAGC	1 cut(s)	343
BsgI	GTGCAG	1 cut(s)	347
Bsh1236I	CGCG	1 cut(s)	437
BshFI	GGCC	1 cut(s)	9
BsiSI	CCGG	2 cut(s)	11, 149
BslI	CCNNNNNNNGG	2 cut(s)	114, 344
BsmAI	GTCTC	1 cut(s)	457
BsnI	GGCC	1 cut(s)	9
Bso31I	GGTCTC	1 cut(s)	457
Bsp143I	GATC	2 cut(s)	602, 733
BspACI	CCGC	4 cut(s)	355, 466, 523, 762
BspANI	GGCC	1 cut(s)	9
BspCNI	CTCAG	1 cut(s)	454
BspFNI	CGCG	1 cut(s)	437
BspLI	GGNNCC	2 cut(s)	348, 735
BspMI	ACCTGC	1 cut(s)	291
BspPI	GGATC	3 cut(s)	610, 728, 741
BspTNI	GGTCTC	1 cut(s)	457
BsrBI	CCGCTC	2 cut(s)	466, 523
BsrFI	RCCGGY	1 cut(s)	148
BsrI	ACTGG	2 cut(s)	108, 498
BssAI	RCCGGY	1 cut(s)	148
BssECI	CCNNGG	2 cut(s)	338, 699
BssMI	GATC	2 cut(s)	602, 733
BssT1I	CCWWGG	1 cut(s)	699
Bst2UI	CCWGG	1 cut(s)	339
Bst4CI	ACNGT	3 cut(s)	272, 658, 715
Bst6I	CTCTTC	1 cut(s)	285
BstC8I	GCNNGC	2 cut(s)	359, 597
BstDEI	CTNAG	2 cut(s)	308, 462
BstFNI	CGCG	1 cut(s)	437
BstKTI	GATC	2 cut(s)	605, 736
BstMAI	GTCTC	1 cut(s)	457
BstMBI	GATC	2 cut(s)	602, 733
BstMWI	GCNNNNNNNGC	1 cut(s)	536
BstNI	CCWGG	1 cut(s)	339
BstPAI	GACNNNNGTC	1 cut(s)	449
BstSCI	CCNGG	2 cut(s)	9, 337
BstSFI	CTRYAG	1 cut(s)	657
BstUI	CGCG	1 cut(s)	437
BstV1I	GCAGC	6 cut(s)	55, 348, 369, 604, 607, 794
BstV2I	GAAGAC	1 cut(s)	239
BstX2I	RGATCY	1 cut(s)	733
BstYI	RGATCY	1 cut(s)	733
BsuI	GTATCC	1 cut(s)	160
BsuRI	GGCC	1 cut(s)	9
BtsIMutI	CAGTG	1 cut(s)	654
BveI	ACCTGC	1 cut(s)	291
Cac8I	GCNNGC	2 cut(s)	359, 597
CaiI	CAGNNNCTG	1 cut(s)	620
Cfr10I	RCCGGY	1 cut(s)	148
Cfr13I	GGNCC	3 cut(s)	8, 268, 347
Csp6I	GTAC	2 cut(s)	259, 335
CviAII	CATG	1 cut(s)	283
CviQI	GTAC	2 cut(s)	259, 335
DdeI	CTNAG	2 cut(s)	308, 462
DpnI	GATC	2 cut(s)	604, 735
DpnII	GATC	2 cut(s)	602, 733
DrdI	GACNNNNNNGTC	1 cut(s)	404
DseDI	GACNNNNNNGTC	1 cut(s)	404
Eam1104I	CTCTTC	1 cut(s)	285
EarI	CTCTTC	1 cut(s)	285
Eco130I	CCWWGG	1 cut(s)	699
Eco31I	GGTCTC	1 cut(s)	457
Eco47I	GGWCC	2 cut(s)	268, 347
Eco57I	CTGAAG	1 cut(s)	597
EcoO109I	RGGNCCY	1 cut(s)	347
EcoRII	CCWGG	1 cut(s)	337
EcoT14I	CCWWGG	1 cut(s)	699
ErhI	CCWWGG	1 cut(s)	699
FaeI	CATG	1 cut(s)	286
FaiI	YATR	6 cut(s)	32, 182, 186, 257, 264, 284
FalI	AAGNNNNNCTT	2 cut(s)	179, 211
FatI	CATG	1 cut(s)	282
FauI	CCCGC	3 cut(s)	362, 459, 755
FblI	GTMKAC	1 cut(s)	557
Fnu4HI	GCNGC	6 cut(s)	44, 362, 383, 618, 621, 783
Fsp4HI	GCNGC	6 cut(s)	44, 362, 383, 618, 621, 783
FspBI	CTAG	2 cut(s)	738, 752
GluI	GCNGC	6 cut(s)	44, 362, 383, 618, 621, 783
GsaI	CCCAGC	1 cut(s)	347
HaeIII	GGCC	1 cut(s)	9
HapII	CCGG	2 cut(s)	11, 149
Hin1II	CATG	1 cut(s)	286
HincII	GTYRAC	3 cut(s)	16, 430, 682
HindII	GTYRAC	3 cut(s)	16, 430, 682
HindIII	AAGCTT	1 cut(s)	313
HinfI	GANTC	3 cut(s)	220, 572, 695
HpaI	GTTAAC	2 cut(s)	430, 682
HpaII	CCGG	2 cut(s)	11, 149
HphI	GGTGA	3 cut(s)	163, 389, 400
Hpy166II	GTNNAC	4 cut(s)	16, 430, 558, 682
Hpy188I	TCNGA	3 cut(s)	276, 463, 694
Hpy188III	TCNNGA	4 cut(s)	217, 505, 731, 794
Hpy8I	GTNNAC	4 cut(s)	16, 430, 558, 682
HpyAV	CCTTC	2 cut(s)	520, 751
HpyCH4III	ACNGT	3 cut(s)	272, 658, 715
HpyCH4V	TGCA	3 cut(s)	286, 364, 782
HpyF10VI	GCNNNNNNNGC	1 cut(s)	536
HpyF3I	CTNAG	2 cut(s)	308, 462
Hsp92II	CATG	1 cut(s)	286
KspAI	GTTAAC	2 cut(s)	430, 682
Kzo9I	GATC	2 cut(s)	602, 733
LmnI	GCTCC	1 cut(s)	63
Lsp1109I	GCAGC	6 cut(s)	55, 348, 369, 604, 607, 794
LweI	GCATC	2 cut(s)	192, 538
MaeI	CTAG	2 cut(s)	738, 752
MaeIII	GTNAC	6 cut(s)	151, 303, 406, 625, 652, 744
MalI	GATC	2 cut(s)	604, 735
MbiI	CCGCTC	2 cut(s)	466, 523
MboI	GATC	2 cut(s)	602, 733
MboII	GAAGA	4 cut(s)	244, 302, 524, 603
MfeI	CAATTG	1 cut(s)	531
MflI	RGATCY	1 cut(s)	733
MluCI	AATT	3 cut(s)	531, 567, 706
MmeI	TCCRAC	1 cut(s)	697
MnlI	CCTC	8 cut(s)	259, 290, 360, 396, 484, 587, 738, 801
MroXI	GAANNNNTTC	1 cut(s)	212
MseI	TTAA	8 cut(s)	75, 90, 393, 417, 429, 563, 681, 710
MspA1I	CMGCKG	1 cut(s)	617
MspI	CCGG	2 cut(s)	11, 149
MspR9I	CCNGG	2 cut(s)	11, 339
MunI	CAATTG	1 cut(s)	531
MvaI	CCWGG	1 cut(s)	339
MvnI	CGCG	1 cut(s)	437
MwoI	GCNNNNNNNGC	1 cut(s)	536
NciI	CCSGG	1 cut(s)	11
NdeII	GATC	2 cut(s)	602, 733
NlaIII	CATG	1 cut(s)	286
NlaIV	GGNNCC	2 cut(s)	348, 735
NmuCI	GTSAC	3 cut(s)	151, 406, 652
PdmI	GAANNNNTTC	1 cut(s)	212
PfeI	GAWTC	3 cut(s)	220, 572, 695
PkrI	GCNGC	6 cut(s)	45, 363, 384, 619, 622, 784
PpuMI	RGGWCCY	1 cut(s)	347
PshAI	GACNNNNGTC	1 cut(s)	449
Psp5II	RGGWCCY	1 cut(s)	347
Psp6I	CCWGG	1 cut(s)	337
PspFI	CCCAGC	1 cut(s)	343
PspGI	CCWGG	1 cut(s)	337
PspN4I	GGNNCC	2 cut(s)	348, 735
PspPI	GGNCC	3 cut(s)	8, 268, 347
PspPPI	RGGWCCY	1 cut(s)	347
PstNI	CAGNNNCTG	1 cut(s)	620
PsuI	RGATCY	1 cut(s)	733
PvuII	CAGCTG	1 cut(s)	617
RsaI	GTAC	2 cut(s)	260, 336
RsaNI	GTAC	2 cut(s)	259, 335
SaqAI	TTAA	8 cut(s)	75, 90, 393, 417, 429, 563, 681, 710
SatI	GCNGC	6 cut(s)	44, 362, 383, 618, 621, 783
Sau3AI	GATC	2 cut(s)	602, 733
Sau96I	GGNCC	3 cut(s)	8, 268, 347
ScrFI	CCNGG	2 cut(s)	11, 339
SfaNI	GCATC	2 cut(s)	192, 538
SfcI	CTRYAG	1 cut(s)	657
SinI	GGWCC	2 cut(s)	268, 347
SmlI	CTYRAG	2 cut(s)	481, 792
SmoI	CTYRAG	2 cut(s)	481, 792
Sse9I	AATT	3 cut(s)	531, 567, 706
SsiI	CCGC	4 cut(s)	355, 466, 523, 762
SspI	AATATT	1 cut(s)	213
SspMI	CTAG	2 cut(s)	738, 752
StyD4I	CCNGG	2 cut(s)	9, 337
StyI	CCWWGG	1 cut(s)	699
TaaI	ACNGT	3 cut(s)	272, 658, 715
TasI	AATT	3 cut(s)	531, 567, 706
TatI	WGTACW	1 cut(s)	258
TfiI	GAWTC	3 cut(s)	220, 572, 695
Tru1I	TTAA	8 cut(s)	75, 90, 393, 417, 429, 563, 681, 710
Tru9I	TTAA	8 cut(s)	75, 90, 393, 417, 429, 563, 681, 710
TscAI	CASTG	1 cut(s)	661
TseFI	GTSAC	3 cut(s)	151, 406, 652
TseI	GCWGC	6 cut(s)	43, 361, 382, 617, 620, 782
Tsp45I	GTSAC	3 cut(s)	151, 406, 652
TspDTI	ATGAA	1 cut(s)	153
TspRI	CASTG	1 cut(s)	661
VpaK11BI	GGWCC	2 cut(s)	268, 347
XmiI	GTMKAC	1 cut(s)	557
XmnI	GAANNNNTTC	1 cut(s)	212
XspI	CTAG	2 cut(s)	738, 752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.