Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0006522

Physical Location & Seq

Genomic Coordinates Reverse (-)

15052290 .. 15053752

Gene Structure 1463 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g19040.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGGGGCTGGTGTGAATTTGTGCAGTGTTTTTGCCTTACTCAGCCTGCACTTGTTTATGTATGGGTGCAACCTATTCATGTGGAAGAGTACAAGAATCAATTACAACTTTATATTTGAATTCCAACCAACCACGGCCCTCAAGTATCGCGACGCCTTCCTCGTATGCACAACCTTCATGACAACTGTGGTTGCTGCCATGGTTGTGCACCTTATATTAAGGGCAAAAAACTTCTTACCTAGCCAAGTTGATGCCATTCCTGGAGTGTTCCTTCTGGTTAGTTTCATTGCTTTAATCAAGATCCCATTGCTGAGACACATGGAATCTACAGCTTGTTACTTTCTTGCTGGAAATTTCAGATCACACCAATACGAAACCTGCCGAAGTGGAAGGCTATTTAGAGAGCTGCTTTATGTTATCTCGTTCTTGCCATACTACTGGCGCGCCATGCAATGTGCAAGACGATGGTTTGATGAATGTGACGTTAACCATTTGGCTAACATGGGAAAATATGTTTCTGCCATGGTGGCAGCCGGATCAAGGATTACATATGCTAACAACCCGCACAGCCACCTATGGTTTTATATAGTAGTGATCACCTCTGTGGTGGCTACAGTCTACCAGTTGTACTGGGACTTTGTCATGGACTGGGGGCTTTTCGACCCAAAATCCAAGAACTTATGGCTAAGAGACGAACTTATTCTCAAGAACAAAAGCATCTATTATGCTTCCATTGTGAGTTTTTATTTAAATCTTTATGTGGCCTATACTTTCATTGCCTCCTTAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000822 GO:0003674 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006082 GO:0006793 GO:0006797 GO:0006799 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006950 GO:0007154 GO:0007165 GO:0008144 GO:0008150 GO:0008152 GO:0008509 GO:0009058 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0012505 GO:0015075 GO:0015103 GO:0015114 GO:0015318 GO:0015698 GO:0016020 GO:0016036 GO:0019932 GO:0022857 GO:0023052 GO:0031667 GO:0031668 GO:0031669 GO:0031984 GO:0033554 GO:0034220 GO:0035435 GO:0035556 GO:0036094 GO:0042594 GO:0043167 GO:0043168 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048016 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0071496 GO:0071704 GO:0071944 GO:0098656 GO:0098660 GO:0098661 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EXS SPX

Protein Analysis

264

Amino Acids

30.56

Weight (kDa)

9.11

Isoelectric Point (pI)

33.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23430
fragaria_vesca	FvH4_4g04040
malus_domestica	MD13G1216800.v1.1 MD16G1222100.v1.1
prunus_persica	Prupe.1G042500_v2.0.a1 Prupe.1G042500_v2.0.a1
pyrus_communis	pycom13g19040 pycom16g18640
rosa_chinensis	RchiOBHm_Chr4g0394311 RchiOBHm_Chr4g0394321
rosa_laevigata	RLG00000009703 RLG00000009704
rosa_multiflora	Rmu_ssc0000423.1_g000005 Rmu_ssc0000423.1_g000013
rosa_roxburghii	Rroxscaffold_5G00339380 Rroxscaffold_6G00430740
rosa_rugosa	Rorug03G0367000.1
rosa_samantha	Rh4AG051600 Rh4AG051900 Rh4BG048800 Rh4BG049300 Rh4CG055500 Rh4CG055900 Rh4DG049100
rosa_wichuraiana	Rw4G004130 Rw7G008900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	386
AccI	GTMKAC	1 cut(s)	618
AccII	CGCG	2 cut(s)	150, 444
AciI	CCGC	1 cut(s)	563
AclWI	GGATC	2 cut(s)	295, 544
AcsI	RAATTY	3 cut(s)	16, 119, 352
AcyI	GRCGYC	1 cut(s)	153
AfaI	GTAC	2 cut(s)	91, 629
AfiI	CCNNNNNNNGG	1 cut(s)	540
AgsI	TTSAA	1 cut(s)	119
AjnI	CCWGG	1 cut(s)	259
AleI	CACNNNNGTG	1 cut(s)	602
AluBI	AGCT	2 cut(s)	332, 406
AluI	AGCT	2 cut(s)	332, 406
Alw21I	GWGCWC	1 cut(s)	210
Alw26I	GTCTC	2 cut(s)	307, 684
Alw44I	GTGCAC	1 cut(s)	206
AlwI	GGATC	2 cut(s)	295, 544
AoxI	GGCC	2 cut(s)	135, 762
ApaLI	GTGCAC	1 cut(s)	206
ApeKI	GCWGC	3 cut(s)	194, 406, 530
ApoI	RAATTY	3 cut(s)	16, 119, 352
AscI	GGCGCGCC	1 cut(s)	442
Asp700I	GAANNNNTTC	1 cut(s)	699
AspLEI	GCGC	2 cut(s)	444, 446
AspS9I	GGNCC	1 cut(s)	136
AsuHPI	GGTGA	1 cut(s)	589
BaeGI	GKGCMC	1 cut(s)	210
Bbv12I	GWGCWC	1 cut(s)	210
BbvI	GCAGC	3 cut(s)	181, 393, 542
BccI	CCATC	1 cut(s)	459
BceAI	ACGGC	1 cut(s)	150
BciT130I	CCWGG	1 cut(s)	261
BclI	TGATCA	1 cut(s)	594
BcoDI	GTCTC	2 cut(s)	307, 684
BfaI	CTAG	1 cut(s)	240
BfmI	CTRYAG	2 cut(s)	327, 612
BfuAI	ACCTGC	1 cut(s)	386
BglI	GCCNNNNNGGC	1 cut(s)	527
BisI	GCNGC	3 cut(s)	195, 407, 531
BlsI	GCNGC	3 cut(s)	196, 408, 532
Bme1390I	CCNGG	1 cut(s)	261
BmgT120I	GGNCC	1 cut(s)	136
BmrFI	CCNGG	1 cut(s)	261
BmrI	ACTGGG	2 cut(s)	640, 658
BmsI	GCATC	2 cut(s)	241, 726
BmuI	ACTGGG	2 cut(s)	640, 658
BpmI	CTGGAG	1 cut(s)	282
Bpu10I	CCTNAGC	1 cut(s)	784
BpuEI	CTTGAG	2 cut(s)	125, 689
BsaHI	GRCGYC	1 cut(s)	153
BsaJI	CCNNGG	3 cut(s)	132, 198, 522
Bsc4I	CCNNNNNNNGG	1 cut(s)	540
Bse1I	ACTGG	4 cut(s)	443, 622, 635, 653
Bse3DI	GCAATG	4 cut(s)	285, 305, 458, 774
BseBI	CCWGG	1 cut(s)	261
BseDI	CCNNGG	3 cut(s)	132, 198, 522
BseLI	CCNNNNNNNGG	1 cut(s)	540
BseMI	GCAATG	4 cut(s)	285, 305, 458, 774
BseMII	CTCAG	2 cut(s)	55, 302
BseNI	ACTGG	4 cut(s)	443, 622, 635, 653
BsePI	GCGCGC	1 cut(s)	442
BseSI	GKGCMC	1 cut(s)	210
BseXI	GCAGC	3 cut(s)	181, 393, 542
BsgI	GTGCAG	2 cut(s)	32, 43
Bsh1236I	CGCG	2 cut(s)	150, 444
BshFI	GGCC	2 cut(s)	137, 764
BsiHKAI	GWGCWC	1 cut(s)	210
BsiSI	CCGG	1 cut(s)	534
BslFI	GGGAC	1 cut(s)	647
BslI	CCNNNNNNNGG	1 cut(s)	540
BsmAI	GTCTC	2 cut(s)	307, 684
BsmBI	CGTCTC	1 cut(s)	684
BsmFI	GGGAC	1 cut(s)	647
BsnI	GGCC	2 cut(s)	137, 764
Bsp1286I	GDGCHC	1 cut(s)	210
Bsp143I	GATC	4 cut(s)	300, 359, 536, 594
Bsp19I	CCATGG	2 cut(s)	198, 522
Bsp68I	TCGCGA	1 cut(s)	150
BspACI	CCGC	1 cut(s)	563
BspANI	GGCC	2 cut(s)	137, 764
BspCNI	CTCAG	2 cut(s)	54, 303
BspFNI	CGCG	2 cut(s)	150, 444
BspHI	TCATGA	1 cut(s)	177
BspMI	ACCTGC	1 cut(s)	386
BspPI	GGATC	2 cut(s)	295, 544
BsrDI	GCAATG	4 cut(s)	285, 305, 458, 774
BsrI	ACTGG	4 cut(s)	443, 622, 635, 653
BssECI	CCNNGG	3 cut(s)	132, 198, 522
BssHII	GCGCGC	1 cut(s)	442
BssMI	GATC	4 cut(s)	300, 359, 536, 594
BssNI	GRCGYC	1 cut(s)	153
BssT1I	CCWWGG	2 cut(s)	198, 522
Bst2UI	CCWGG	1 cut(s)	261
Bst4CI	ACNGT	2 cut(s)	187, 616
Bst6I	CTCTTC	1 cut(s)	80
BstACI	GRCGYC	1 cut(s)	153
BstC8I	GCNNGC	2 cut(s)	47, 444
BstDEI	CTNAG	4 cut(s)	41, 311, 686, 784
BstDSI	CCRYGG	3 cut(s)	132, 198, 522
BstFNI	CGCG	2 cut(s)	150, 444
BstHHI	GCGC	2 cut(s)	444, 446
BstKTI	GATC	4 cut(s)	303, 362, 539, 597
BstMAI	GTCTC	2 cut(s)	307, 684
BstMBI	GATC	4 cut(s)	300, 359, 536, 594
BstMWI	GCNNNNNNNGC	3 cut(s)	448, 527, 785
BstNI	CCWGG	1 cut(s)	261
BstSCI	CCNGG	1 cut(s)	259
BstSFI	CTRYAG	2 cut(s)	327, 612
BstSLI	GKGCMC	1 cut(s)	210
BstUI	CGCG	2 cut(s)	150, 444
BstV1I	GCAGC	3 cut(s)	181, 393, 542
BstX2I	RGATCY	1 cut(s)	300
BstXI	CCANNNNNNTGG	1 cut(s)	438
BstYI	RGATCY	1 cut(s)	300
BsuRI	GGCC	2 cut(s)	137, 764
BtgI	CCRYGG	3 cut(s)	132, 198, 522
BtsI	GCAGTG	1 cut(s)	31
BtsIMutI	CAGTG	1 cut(s)	31
BtuMI	TCGCGA	1 cut(s)	150
BveI	ACCTGC	1 cut(s)	386
Cac8I	GCNNGC	2 cut(s)	47, 444
CciI	TCATGA	1 cut(s)	177
CfoI	GCGC	2 cut(s)	444, 446
Cfr13I	GGNCC	1 cut(s)	136
CseI	GACGC	1 cut(s)	161
Csp6I	GTAC	2 cut(s)	90, 628
CviAII	CATG	8 cut(s)	79, 178, 199, 319, 448, 502, 523, 643
CviQI	GTAC	2 cut(s)	90, 628
DdeI	CTNAG	4 cut(s)	41, 311, 686, 784
DpnI	GATC	4 cut(s)	302, 361, 538, 596
DpnII	GATC	4 cut(s)	300, 359, 536, 594
DraI	TTTAAA	1 cut(s)	750
Eam1104I	CTCTTC	1 cut(s)	80
EarI	CTCTTC	1 cut(s)	80
Eco130I	CCWWGG	2 cut(s)	198, 522
EcoRI	GAATTC	1 cut(s)	119
EcoRII	CCWGG	1 cut(s)	259
EcoT14I	CCWWGG	2 cut(s)	198, 522
ErhI	CCWWGG	2 cut(s)	198, 522
Esp3I	CGTCTC	1 cut(s)	684
FaeI	CATG	8 cut(s)	82, 181, 202, 322, 451, 505, 526, 646
FaqI	GGGAC	1 cut(s)	647
FatI	CATG	8 cut(s)	78, 177, 198, 318, 447, 501, 522, 642
FauI	CCCGC	1 cut(s)	570
FauNDI	CATATG	1 cut(s)	550
FbaI	TGATCA	1 cut(s)	594
FblI	GTMKAC	1 cut(s)	618
Fnu4HI	GCNGC	3 cut(s)	195, 407, 531
Fsp4HI	GCNGC	3 cut(s)	195, 407, 531
FspBI	CTAG	1 cut(s)	240
GlaI	GCGC	2 cut(s)	443, 445
GluI	GCNGC	3 cut(s)	195, 407, 531
GsuI	CTGGAG	1 cut(s)	282
HaeIII	GGCC	2 cut(s)	137, 764
HapII	CCGG	1 cut(s)	534
HgaI	GACGC	1 cut(s)	161
HhaI	GCGC	2 cut(s)	444, 446
Hin1I	GRCGYC	1 cut(s)	153
Hin1II	CATG	8 cut(s)	82, 181, 202, 322, 451, 505, 526, 646
Hin6I	GCGC	2 cut(s)	442, 444
HinP1I	GCGC	2 cut(s)	442, 444
HincII	GTYRAC	1 cut(s)	487
HindII	GTYRAC	1 cut(s)	487
HinfI	GANTC	2 cut(s)	96, 323
HpaI	GTTAAC	1 cut(s)	487
HpaII	CCGG	1 cut(s)	534
HphI	GGTGA	1 cut(s)	589
Hpy166II	GTNNAC	3 cut(s)	208, 487, 619
Hpy188I	TCNGA	1 cut(s)	359
Hpy188III	TCNNGA	4 cut(s)	149, 178, 298, 706
Hpy8I	GTNNAC	3 cut(s)	208, 487, 619
Hpy99I	CGWCG	1 cut(s)	155
HpyAV	CCTTC	4 cut(s)	166, 184, 281, 384
HpyCH4III	ACNGT	2 cut(s)	187, 616
HpyCH4IV	ACGT	1 cut(s)	483
HpyCH4V	TGCA	7 cut(s)	24, 49, 69, 168, 208, 451, 458
HpyF10VI	GCNNNNNNNGC	3 cut(s)	448, 527, 785
HpyF3I	CTNAG	4 cut(s)	41, 311, 686, 784
HpySE526I	ACGT	1 cut(s)	483
Hsp92I	GRCGYC	1 cut(s)	153
Hsp92II	CATG	8 cut(s)	82, 181, 202, 322, 451, 505, 526, 646
HspAI	GCGC	2 cut(s)	442, 444
Ksp22I	TGATCA	1 cut(s)	594
KspAI	GTTAAC	1 cut(s)	487
Kzo9I	GATC	4 cut(s)	300, 359, 536, 594
Lsp1109I	GCAGC	3 cut(s)	181, 393, 542
LweI	GCATC	2 cut(s)	241, 726
MaeI	CTAG	1 cut(s)	240
MaeII	ACGT	1 cut(s)	483
MaeIII	GTNAC	2 cut(s)	335, 479
MalI	GATC	4 cut(s)	302, 361, 538, 596
MboI	GATC	4 cut(s)	300, 359, 536, 594
MboII	GAAGA	1 cut(s)	97
MflI	RGATCY	1 cut(s)	300
MhlI	GDGCHC	1 cut(s)	210
MluCI	AATT	4 cut(s)	16, 100, 119, 352
MmeI	TCCRAC	1 cut(s)	148
MnlI	CCTC	4 cut(s)	149, 170, 610, 790
MroXI	GAANNNNTTC	1 cut(s)	699
MseI	TTAA	4 cut(s)	218, 293, 486, 749
MslI	CAYNNNNRTG	2 cut(s)	203, 602
MspI	CCGG	1 cut(s)	534
MspR9I	CCNGG	1 cut(s)	261
MvaI	CCWGG	1 cut(s)	261
MvnI	CGCG	2 cut(s)	150, 444
MwoI	GCNNNNNNNGC	3 cut(s)	448, 527, 785
NcoI	CCATGG	2 cut(s)	198, 522
NdeI	CATATG	1 cut(s)	550
NdeII	GATC	4 cut(s)	300, 359, 536, 594
NlaIII	CATG	8 cut(s)	82, 181, 202, 322, 451, 505, 526, 646
NmuCI	GTSAC	1 cut(s)	479
NruI	TCGCGA	1 cut(s)	150
OliI	CACNNNNGTG	1 cut(s)	602
PagI	TCATGA	1 cut(s)	177
PalAI	GGCGCGCC	1 cut(s)	442
PauI	GCGCGC	1 cut(s)	442
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PdmI	GAANNNNTTC	1 cut(s)	699
PfeI	GAWTC	2 cut(s)	96, 323
PflFI	GACNNNGTC	1 cut(s)	638
PfoI	TCCNGGA	1 cut(s)	259
PkrI	GCNGC	3 cut(s)	196, 408, 532
Psp6I	CCWGG	1 cut(s)	259
PspGI	CCWGG	1 cut(s)	259
PspPI	GGNCC	1 cut(s)	136
PsuI	RGATCY	1 cut(s)	300
PsyI	GACNNNGTC	1 cut(s)	638
PteI	GCGCGC	1 cut(s)	442
RruI	TCGCGA	1 cut(s)	150
RsaI	GTAC	2 cut(s)	91, 629
RsaNI	GTAC	2 cut(s)	90, 628
RseI	CAYNNNNRTG	2 cut(s)	203, 602
SaqAI	TTAA	4 cut(s)	218, 293, 486, 749
SatI	GCNGC	3 cut(s)	195, 407, 531
Sau3AI	GATC	4 cut(s)	300, 359, 536, 594
Sau96I	GGNCC	1 cut(s)	136
ScrFI	CCNGG	1 cut(s)	261
SduI	GDGCHC	1 cut(s)	210
SfaNI	GCATC	2 cut(s)	241, 726
SfcI	CTRYAG	2 cut(s)	327, 612
SgsI	GGCGCGCC	1 cut(s)	442
SmiI	ATTTAAAT	1 cut(s)	750
SmiMI	CAYNNNNRTG	2 cut(s)	203, 602
SmlI	CTYRAG	2 cut(s)	140, 704
SmoI	CTYRAG	2 cut(s)	140, 704
Sse9I	AATT	4 cut(s)	16, 100, 119, 352
SsiI	CCGC	1 cut(s)	563
SspMI	CTAG	1 cut(s)	240
StyD4I	CCNGG	1 cut(s)	259
StyI	CCWWGG	2 cut(s)	198, 522
SwaI	ATTTAAAT	1 cut(s)	750
TaaI	ACNGT	2 cut(s)	187, 616
TaiI	ACGT	1 cut(s)	486
TaqI	TCGA	1 cut(s)	660
TasI	AATT	4 cut(s)	16, 100, 119, 352
TatI	WGTACW	2 cut(s)	89, 627
TfiI	GAWTC	2 cut(s)	96, 323
Tru1I	TTAA	4 cut(s)	218, 293, 486, 749
Tru9I	TTAA	4 cut(s)	218, 293, 486, 749
TscAI	CASTG	1 cut(s)	31
TseFI	GTSAC	1 cut(s)	479
TseI	GCWGC	3 cut(s)	194, 406, 530
Tsp45I	GTSAC	1 cut(s)	479
TspDTI	ATGAA	5 cut(s)	67, 166, 274, 489, 763
TspRI	CASTG	1 cut(s)	31
Tth111I	GACNNNGTC	1 cut(s)	638
VneI	GTGCAC	1 cut(s)	206
XapI	RAATTY	3 cut(s)	16, 119, 352
XmiI	GTMKAC	1 cut(s)	618
XmnI	GAANNNNTTC	1 cut(s)	699
XspI	CTAG	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.