Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0006522

Physical Location & Seq

Genomic Coordinates Reverse (-)

10803577 .. 10823175

Gene Structure 19599 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG051600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGCCGAAAACCAAAATTTGGAGGATAAAGCATGTTCTGGTGTGGAATTGAAGGTTTCTGAAAGTGAGATGGGTGATATTTTGAATGCGTCAAAGGTATCGAACCAGCAGGCATCAGCAAGTTATCTAAAAGCAGTGAAGAGATCACATTTCTTCAGTTCTAATAAGGTTTCCACTGCCCTCCTGATATGCCCCTTGGACATCTTCTATCGACCTACTTGTTACTGCTTCATCAGAGTAATTCGAAACATAGTCTGTTCTCCACTATATAAGATTCCATTGCTGAGACACATGGAATCCACAGCCTGCTACTTCCTTGCTCGAAGTTTCAGAACACATCAATATGAGACTTGCAAAAGTCGAAGGCTATTTAAAGAGCTCGCTTATGTCATTTCATTCTTGCAGTACTACTGGCGTGCAATGCAGTGTGCAAGAAGATGGTTTGATGAGTCTGATGTCAACCATTTGGCTAACATGGGGAAGTGTGTTTCAGCCATGGTGGCAGCAGGAGCCAGGATTACATATGCTAACCAGCAGAATCATCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000822 GO:0003674 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006082 GO:0006793 GO:0006797 GO:0006799 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006950 GO:0007154 GO:0007165 GO:0008144 GO:0008150 GO:0008152 GO:0008509 GO:0009058 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0012505 GO:0015075 GO:0015103 GO:0015114 GO:0015318 GO:0015698 GO:0016020 GO:0016036 GO:0019932 GO:0022857 GO:0023052 GO:0031667 GO:0031668 GO:0031669 GO:0031984 GO:0033554 GO:0034220 GO:0035435 GO:0035556 GO:0036094 GO:0042594 GO:0043167 GO:0043168 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048016 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0071496 GO:0071704 GO:0071944 GO:0098656 GO:0098660 GO:0098661 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EXS SPX

Protein Analysis

182

Amino Acids

20.95

Weight (kDa)

9.17

Isoelectric Point (pI)

48.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXS	PF03124	58 - 181	3e-16	EXS family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23430
fragaria_vesca	FvH4_4g04040
malus_domestica	MD13G1216800.v1.1 MD16G1222100.v1.1
prunus_persica	Prupe.1G042500_v2.0.a1 Prupe.1G042500_v2.0.a1
pyrus_communis	pycom13g19040 pycom16g18640
rosa_chinensis	RchiOBHm_Chr4g0394311 RchiOBHm_Chr4g0394321
rosa_laevigata	RLG00000009703 RLG00000009704
rosa_multiflora	Rmu_ssc0000423.1_g000005 Rmu_ssc0000423.1_g000013
rosa_roxburghii	Rroxscaffold_5G00339380 Rroxscaffold_6G00430740
rosa_rugosa	Rorug03G0367000.1
rosa_samantha	Rh4AG051600 Rh4AG051900 Rh4BG048800 Rh4BG049300 Rh4CG055500 Rh4CG055900 Rh4DG049100
rosa_wichuraiana	Rw4G004130 Rw7G008900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	19
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	16
AcuI	CTGAAG	1 cut(s)	139
AfaI	GTAC	1 cut(s)	407
AfiI	CCNNNNNNNGG	1 cut(s)	19
AgsI	TTSAA	2 cut(s)	52, 85
AjnI	CCWGG	1 cut(s)	512
AluBI	AGCT	1 cut(s)	379
AluI	AGCT	1 cut(s)	379
Alw21I	GWGCWC	1 cut(s)	381
Alw26I	GTCTC	2 cut(s)	280, 341
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	503
ApoI	RAATTY	1 cut(s)	16
AsuHPI	GGTGA	1 cut(s)	86
AsuII	TTCGAA	1 cut(s)	244
BanII	GRGCYC	1 cut(s)	381
Bbv12I	GWGCWC	1 cut(s)	381
BbvI	GCAGC	1 cut(s)	515
BccI	CCATC	2 cut(s)	64, 432
BciT130I	CCWGG	1 cut(s)	514
BcoDI	GTCTC	2 cut(s)	280, 341
BglI	GCCNNNNNGGC	1 cut(s)	500
BisI	GCNGC	1 cut(s)	504
BlsI	GCNGC	1 cut(s)	505
BmcAI	AGTACT	1 cut(s)	407
Bme1390I	CCNGG	1 cut(s)	514
BmiI	GGNNCC	1 cut(s)	511
BmrFI	CCNGG	1 cut(s)	514
BmsI	GCATC	1 cut(s)	122
Bpu14I	TTCGAA	1 cut(s)	244
BsaJI	CCNNGG	2 cut(s)	195, 495
Bsc4I	CCNNNNNNNGG	1 cut(s)	19
Bse1I	ACTGG	1 cut(s)	416
Bse3DI	GCAATG	2 cut(s)	278, 426
BseBI	CCWGG	1 cut(s)	514
BseDI	CCNNGG	2 cut(s)	195, 495
BseLI	CCNNNNNNNGG	1 cut(s)	19
BseMI	GCAATG	2 cut(s)	278, 426
BseMII	CTCAG	1 cut(s)	275
BseNI	ACTGG	1 cut(s)	416
BseXI	GCAGC	1 cut(s)	515
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	381
BslI	CCNNNNNNNGG	1 cut(s)	19
BsmAI	GTCTC	2 cut(s)	280, 341
BsmI	GAATGC	1 cut(s)	91
BsnI	GGCC	1 cut(s)	5
Bsp119I	TTCGAA	1 cut(s)	244
Bsp1286I	GDGCHC	1 cut(s)	381
Bsp143I	GATC	1 cut(s)	143
Bsp19I	CCATGG	1 cut(s)	495
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	276
BspLI	GGNNCC	1 cut(s)	511
BspT104I	TTCGAA	1 cut(s)	244
BsrDI	GCAATG	2 cut(s)	278, 426
BsrI	ACTGG	1 cut(s)	416
BssECI	CCNNGG	2 cut(s)	195, 495
BssMI	GATC	1 cut(s)	143
BssT1I	CCWWGG	2 cut(s)	195, 495
Bst2UI	CCWGG	1 cut(s)	514
Bst6I	CTCTTC	1 cut(s)	134
BstBI	TTCGAA	1 cut(s)	244
BstC8I	GCNNGC	4 cut(s)	111, 307, 381, 417
BstDEI	CTNAG	1 cut(s)	284
BstDSI	CCRYGG	1 cut(s)	495
BstKTI	GATC	1 cut(s)	146
BstMAI	GTCTC	2 cut(s)	280, 341
BstMBI	GATC	1 cut(s)	143
BstMWI	GCNNNNNNNGC	3 cut(s)	421, 500, 509
BstNI	CCWGG	1 cut(s)	514
BstNSI	RCATGY	1 cut(s)	36
BstSCI	CCNGG	1 cut(s)	512
BstV1I	GCAGC	1 cut(s)	515
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	495
BtsI	GCAGTG	3 cut(s)	141, 174, 431
BtsIMutI	CAGTG	3 cut(s)	141, 174, 431
Cac8I	GCNNGC	4 cut(s)	111, 307, 381, 417
CseI	GACGC	1 cut(s)	78
Csp6I	GTAC	1 cut(s)	406
CviAII	CATG	4 cut(s)	33, 292, 475, 496
CviJI	RGCY	7 cut(s)	5, 305, 367, 379, 470, 494, 512
CviKI_1	RGCY	7 cut(s)	5, 305, 367, 379, 470, 494, 512
CviQI	GTAC	1 cut(s)	406
DdeI	CTNAG	1 cut(s)	284
DpnI	GATC	1 cut(s)	145
DpnII	GATC	1 cut(s)	143
DraI	TTTAAA	1 cut(s)	373
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	134
EarI	CTCTTC	1 cut(s)	134
Ecl136II	GAGCTC	1 cut(s)	379
Eco130I	CCWWGG	2 cut(s)	195, 495
Eco24I	GRGCYC	1 cut(s)	381
Eco53kI	GAGCTC	1 cut(s)	379
Eco57I	CTGAAG	1 cut(s)	139
EcoICRI	GAGCTC	1 cut(s)	379
EcoRII	CCWGG	1 cut(s)	512
EcoT14I	CCWWGG	2 cut(s)	195, 495
EcoT38I	GRGCYC	1 cut(s)	381
ErhI	CCWWGG	2 cut(s)	195, 495
FaeI	CATG	4 cut(s)	36, 295, 478, 499
FatI	CATG	4 cut(s)	32, 291, 474, 495
FauNDI	CATATG	1 cut(s)	523
Fnu4HI	GCNGC	1 cut(s)	504
FriOI	GRGCYC	1 cut(s)	381
Fsp4HI	GCNGC	1 cut(s)	504
GluI	GCNGC	1 cut(s)	504
HaeIII	GGCC	1 cut(s)	5
HgaI	GACGC	1 cut(s)	78
Hin1II	CATG	4 cut(s)	36, 295, 478, 499
HincII	GTYRAC	1 cut(s)	460
HindII	GTYRAC	1 cut(s)	460
HinfI	GANTC	4 cut(s)	274, 296, 449, 538
HphI	GGTGA	1 cut(s)	86
Hpy166II	GTNNAC	1 cut(s)	460
Hpy188I	TCNGA	4 cut(s)	61, 236, 332, 454
Hpy188III	TCNNGA	1 cut(s)	184
Hpy8I	GTNNAC	1 cut(s)	460
HpyAV	CCTTC	2 cut(s)	46, 357
HpyCH4V	TGCA	5 cut(s)	354, 403, 419, 424, 431
HpyF10VI	GCNNNNNNNGC	3 cut(s)	421, 500, 509
HpyF3I	CTNAG	1 cut(s)	284
Hsp92II	CATG	4 cut(s)	36, 295, 478, 499
Kzo9I	GATC	1 cut(s)	143
LmnI	GCTCC	1 cut(s)	509
Lsp1109I	GCAGC	1 cut(s)	515
LweI	GCATC	1 cut(s)	122
MaeIII	GTNAC	1 cut(s)	221
MalI	GATC	1 cut(s)	145
MboI	GATC	1 cut(s)	143
MboII	GAAGA	4 cut(s)	145, 151, 196, 447
MhlI	GDGCHC	1 cut(s)	381
MluCI	AATT	3 cut(s)	16, 47, 240
MlyI	GAGTC	1 cut(s)	458
MnlI	CCTC	2 cut(s)	16, 191
MseI	TTAA	1 cut(s)	372
MslI	CAYNNNNRTG	1 cut(s)	342
MspR9I	CCNGG	1 cut(s)	514
Mva1269I	GAATGC	1 cut(s)	91
MvaI	CCWGG	1 cut(s)	514
MwoI	GCNNNNNNNGC	3 cut(s)	421, 500, 509
NcoI	CCATGG	1 cut(s)	495
NdeI	CATATG	1 cut(s)	523
NdeII	GATC	1 cut(s)	143
NlaIII	CATG	4 cut(s)	36, 295, 478, 499
NlaIV	GGNNCC	1 cut(s)	511
NspI	RCATGY	1 cut(s)	36
NspV	TTCGAA	1 cut(s)	244
PctI	GAATGC	1 cut(s)	91
PfeI	GAWTC	3 cut(s)	274, 296, 538
PflMI	CCANNNNNTGG	1 cut(s)	19
PkrI	GCNGC	1 cut(s)	505
PleI	GAGTC	1 cut(s)	457
PpsI	GAGTC	1 cut(s)	457
Psp124BI	GAGCTC	1 cut(s)	381
Psp6I	CCWGG	1 cut(s)	512
PspGI	CCWGG	1 cut(s)	512
PspN4I	GGNNCC	1 cut(s)	511
RsaI	GTAC	1 cut(s)	407
RsaNI	GTAC	1 cut(s)	406
RseI	CAYNNNNRTG	1 cut(s)	342
SacI	GAGCTC	1 cut(s)	381
SaqAI	TTAA	1 cut(s)	372
SatI	GCNGC	1 cut(s)	504
Sau3AI	GATC	1 cut(s)	143
ScaI	AGTACT	1 cut(s)	407
SchI	GAGTC	1 cut(s)	458
ScrFI	CCNGG	1 cut(s)	514
SduI	GDGCHC	1 cut(s)	381
SetI	ASST	5 cut(s)	57, 99, 171, 217, 381
SfaNI	GCATC	1 cut(s)	122
SfuI	TTCGAA	1 cut(s)	244
SmiMI	CAYNNNNRTG	1 cut(s)	342
Sse9I	AATT	3 cut(s)	16, 47, 240
SstI	GAGCTC	1 cut(s)	381
StyD4I	CCNGG	1 cut(s)	512
StyI	CCWWGG	2 cut(s)	195, 495
TaqI	TCGA	5 cut(s)	101, 211, 244, 322, 361
TasI	AATT	3 cut(s)	16, 47, 240
TatI	WGTACW	1 cut(s)	405
TfiI	GAWTC	3 cut(s)	274, 296, 538
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TscAI	CASTG	3 cut(s)	141, 181, 431
TseI	GCWGC	1 cut(s)	503
TspDTI	ATGAA	2 cut(s)	220, 384
TspRI	CASTG	3 cut(s)	141, 181, 431
Van91I	CCANNNNNTGG	1 cut(s)	19
XapI	RAATTY	1 cut(s)	16
XceI	RCATGY	1 cut(s)	36
ZrmI	AGTACT	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.