Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0006522

Physical Location & Seq

Genomic Coordinates Forward (+)

8258019 .. 8259535

Gene Structure 1517 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G008900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGTTGTACATCTTATATTAAGGGCTAATAACTTCTTACCAAGCCAAGTTGATGCCATTCCTGGAATTTTCCTTCTGCTTTCCATTGCCCTGCTGATATGCCCCTTGGACATCTTCTATCGACCTACTCGTTACTGCTTCATCAGAGTAATTCGTAATATAGTCTGTTCTCCACTTTATAAGGTTTTGATGGTAGACTTTTTCATGGCTGATCAGCTAACTAGCAAGATCCCATTGCTGAGACACATGGAATCCACAGCCTGCTACTTCCTTGCTGGAAGTTTCAGAACACACCAATATGAGACTTGCAAAACTGGAAGGCTATTTAAAGAGCTCGCTTATGTCATTTCATTCTTGCCATACTACTGGCGTGCAATGCAGGACCCAGAACTGGTGGCTGCATCTAGTGATCCAGAAGTTATGGCTGCTCTTCAAGATGGTACCTTCTATTCTGATATTTCTCAAATTGGCCTTGTCTCCCTCCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000822 GO:0003674 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006082 GO:0006793 GO:0006797 GO:0006799 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006950 GO:0007154 GO:0007165 GO:0008144 GO:0008150 GO:0008152 GO:0008509 GO:0009058 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0012505 GO:0015075 GO:0015103 GO:0015114 GO:0015318 GO:0015698 GO:0016020 GO:0016036 GO:0019932 GO:0022857 GO:0023052 GO:0031667 GO:0031668 GO:0031669 GO:0031984 GO:0033554 GO:0034220 GO:0035435 GO:0035556 GO:0036094 GO:0042594 GO:0043167 GO:0043168 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048016 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0071496 GO:0071704 GO:0071944 GO:0098656 GO:0098660 GO:0098661 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EXS SPX

Protein Analysis

162

Amino Acids

18.53

Weight (kDa)

6.8

Isoelectric Point (pI)

35.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXS	PF03124	6 - 127	3.8e-27	EXS family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23430
fragaria_vesca	FvH4_4g04040
malus_domestica	MD13G1216800.v1.1 MD16G1222100.v1.1
prunus_persica	Prupe.1G042500_v2.0.a1 Prupe.1G042500_v2.0.a1
pyrus_communis	pycom13g19040 pycom16g18640
rosa_chinensis	RchiOBHm_Chr4g0394311 RchiOBHm_Chr4g0394321
rosa_laevigata	RLG00000009703 RLG00000009704
rosa_multiflora	Rmu_ssc0000423.1_g000005 Rmu_ssc0000423.1_g000013
rosa_roxburghii	Rroxscaffold_5G00339380 Rroxscaffold_6G00430740
rosa_rugosa	Rorug03G0367000.1
rosa_samantha	Rh4AG051600 Rh4AG051900 Rh4BG048800 Rh4BG049300 Rh4CG055500 Rh4CG055900 Rh4DG049100
rosa_wichuraiana	Rw4G004130 Rw7G008900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	180
Acc65I	GGTACC	1 cut(s)	440
AccB1I	GGYRCC	1 cut(s)	440
AccI	GTMKAC	1 cut(s)	195
AclWI	GGATC	2 cut(s)	223, 404
AcsI	RAATTY	1 cut(s)	66
AfaI	GTAC	2 cut(s)	9, 442
AfiI	CCNNNNNNNGG	1 cut(s)	391
AgsI	TTSAA	1 cut(s)	434
AjnI	CCWGG	1 cut(s)	61
AluBI	AGCT	2 cut(s)	217, 334
AluI	AGCT	2 cut(s)	217, 334
Alw21I	GWGCWC	1 cut(s)	336
Alw26I	GTCTC	3 cut(s)	235, 296, 481
AlwI	GGATC	2 cut(s)	223, 404
AoxI	GGCC	1 cut(s)	469
ApeKI	GCWGC	2 cut(s)	398, 425
ApoI	RAATTY	1 cut(s)	66
Asp718I	GGTACC	1 cut(s)	440
AspS9I	GGNCC	1 cut(s)	382
AvaII	GGWCC	1 cut(s)	382
BanI	GGYRCC	1 cut(s)	440
BanII	GRGCYC	1 cut(s)	336
Bbv12I	GWGCWC	1 cut(s)	336
BbvI	GCAGC	2 cut(s)	385, 412
BccI	CCATC	2 cut(s)	184, 431
BciT130I	CCWGG	1 cut(s)	63
BclI	TGATCA	1 cut(s)	211
BcoDI	GTCTC	3 cut(s)	235, 296, 481
BfaI	CTAG	2 cut(s)	222, 405
BisI	GCNGC	2 cut(s)	399, 426
BlsI	GCNGC	2 cut(s)	400, 427
Bme1390I	CCNGG	1 cut(s)	63
Bme18I	GGWCC	1 cut(s)	382
BmgT120I	GGNCC	1 cut(s)	382
BmiI	GGNNCC	2 cut(s)	384, 442
BmrFI	CCNGG	1 cut(s)	63
BmsI	GCATC	2 cut(s)	43, 410
BsaJI	CCNNGG	1 cut(s)	105
Bsc4I	CCNNNNNNNGG	1 cut(s)	391
Bse1I	ACTGG	3 cut(s)	319, 371, 396
Bse3DI	GCAATG	3 cut(s)	84, 233, 381
BseBI	CCWGG	1 cut(s)	63
BseDI	CCNNGG	1 cut(s)	105
BseLI	CCNNNNNNNGG	1 cut(s)	391
BseMI	GCAATG	3 cut(s)	84, 233, 381
BseMII	CTCAG	1 cut(s)	230
BseNI	ACTGG	3 cut(s)	319, 371, 396
BseXI	GCAGC	2 cut(s)	385, 412
BshFI	GGCC	1 cut(s)	471
BshNI	GGYRCC	1 cut(s)	440
BsiHKAI	GWGCWC	1 cut(s)	336
BslI	CCNNNNNNNGG	1 cut(s)	391
BsmAI	GTCTC	3 cut(s)	235, 296, 481
BsnI	GGCC	1 cut(s)	471
Bsp1286I	GDGCHC	1 cut(s)	336
Bsp1407I	TGTACA	1 cut(s)	7
Bsp143I	GATC	3 cut(s)	211, 228, 409
BspANI	GGCC	1 cut(s)	471
BspCNI	CTCAG	1 cut(s)	231
BspLI	GGNNCC	2 cut(s)	384, 442
BspPI	GGATC	2 cut(s)	223, 404
BspQI	GCTCTTC	1 cut(s)	435
BspT107I	GGYRCC	1 cut(s)	440
BsrDI	GCAATG	3 cut(s)	84, 233, 381
BsrGI	TGTACA	1 cut(s)	7
BsrI	ACTGG	3 cut(s)	319, 371, 396
BssECI	CCNNGG	1 cut(s)	105
BssMI	GATC	3 cut(s)	211, 228, 409
BssT1I	CCWWGG	1 cut(s)	105
Bst2UI	CCWGG	1 cut(s)	63
Bst6I	CTCTTC	1 cut(s)	435
BstAUI	TGTACA	1 cut(s)	7
BstC8I	GCNNGC	3 cut(s)	262, 336, 372
BstDEI	CTNAG	1 cut(s)	239
BstKTI	GATC	3 cut(s)	214, 231, 412
BstMAI	GTCTC	3 cut(s)	235, 296, 481
BstMBI	GATC	3 cut(s)	211, 228, 409
BstMWI	GCNNNNNNNGC	1 cut(s)	376
BstNI	CCWGG	1 cut(s)	63
BstSCI	CCNGG	1 cut(s)	61
BstV1I	GCAGC	2 cut(s)	385, 412
BstX2I	RGATCY	1 cut(s)	228
BstXI	CCANNNNNNTGG	1 cut(s)	366
BstYI	RGATCY	1 cut(s)	228
BsuRI	GGCC	1 cut(s)	471
Cac8I	GCNNGC	3 cut(s)	262, 336, 372
Cfr13I	GGNCC	1 cut(s)	382
Csp6I	GTAC	2 cut(s)	8, 441
CviAII	CATG	2 cut(s)	205, 247
CviQI	GTAC	2 cut(s)	8, 441
DdeI	CTNAG	1 cut(s)	239
DpnI	GATC	3 cut(s)	213, 230, 411
DpnII	GATC	3 cut(s)	211, 228, 409
DraI	TTTAAA	1 cut(s)	328
Eam1104I	CTCTTC	1 cut(s)	435
EarI	CTCTTC	1 cut(s)	435
Ecl136II	GAGCTC	1 cut(s)	334
Eco130I	CCWWGG	1 cut(s)	105
Eco24I	GRGCYC	1 cut(s)	336
Eco47I	GGWCC	1 cut(s)	382
Eco53kI	GAGCTC	1 cut(s)	334
EcoICRI	GAGCTC	1 cut(s)	334
EcoO109I	RGGNCCY	1 cut(s)	382
EcoRII	CCWGG	1 cut(s)	61
EcoT14I	CCWWGG	1 cut(s)	105
EcoT38I	GRGCYC	1 cut(s)	336
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	2 cut(s)	208, 250
FatI	CATG	2 cut(s)	204, 246
FbaI	TGATCA	1 cut(s)	211
FblI	GTMKAC	1 cut(s)	195
Fnu4HI	GCNGC	2 cut(s)	399, 426
FriOI	GRGCYC	1 cut(s)	336
Fsp4HI	GCNGC	2 cut(s)	399, 426
FspBI	CTAG	2 cut(s)	222, 405
GluI	GCNGC	2 cut(s)	399, 426
HaeIII	GGCC	1 cut(s)	471
Hin1II	CATG	2 cut(s)	208, 250
HinfI	GANTC	1 cut(s)	251
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188I	TCNGA	3 cut(s)	146, 287, 454
Hpy188III	TCNNGA	2 cut(s)	413, 434
Hpy8I	GTNNAC	1 cut(s)	196
HpyAV	CCTTC	3 cut(s)	83, 312, 454
HpyCH4V	TGCA	4 cut(s)	309, 374, 379, 401
HpyF10VI	GCNNNNNNNGC	1 cut(s)	376
HpyF3I	CTNAG	1 cut(s)	239
Hsp92II	CATG	2 cut(s)	208, 250
KpnI	GGTACC	1 cut(s)	444
Ksp22I	TGATCA	1 cut(s)	211
Kzo9I	GATC	3 cut(s)	211, 228, 409
LguI	GCTCTTC	1 cut(s)	435
Lsp1109I	GCAGC	2 cut(s)	385, 412
LweI	GCATC	2 cut(s)	43, 410
MaeI	CTAG	2 cut(s)	222, 405
MaeIII	GTNAC	1 cut(s)	131
MalI	GATC	3 cut(s)	213, 230, 411
MboI	GATC	3 cut(s)	211, 228, 409
MboII	GAAGA	2 cut(s)	106, 422
MflI	RGATCY	1 cut(s)	228
MhlI	GDGCHC	1 cut(s)	336
MluCI	AATT	3 cut(s)	66, 150, 465
MseI	TTAA	3 cut(s)	20, 327, 487
MslI	CAYNNNNRTG	1 cut(s)	297
MspR9I	CCNGG	1 cut(s)	63
MvaI	CCWGG	1 cut(s)	63
MwoI	GCNNNNNNNGC	1 cut(s)	376
NdeII	GATC	3 cut(s)	211, 228, 409
NlaIII	CATG	2 cut(s)	208, 250
NlaIV	GGNNCC	2 cut(s)	384, 442
PciSI	GCTCTTC	1 cut(s)	435
PcsI	WCGNNNNNNNCGW	1 cut(s)	127
PfeI	GAWTC	1 cut(s)	251
PfoI	TCCNGGA	1 cut(s)	61
PkrI	GCNGC	2 cut(s)	400, 427
PpuMI	RGGWCCY	1 cut(s)	382
PsiI	TTATAA	1 cut(s)	180
Psp124BI	GAGCTC	1 cut(s)	336
Psp5II	RGGWCCY	1 cut(s)	382
Psp6I	CCWGG	1 cut(s)	61
PspGI	CCWGG	1 cut(s)	61
PspN4I	GGNNCC	2 cut(s)	384, 442
PspPI	GGNCC	1 cut(s)	382
PspPPI	RGGWCCY	1 cut(s)	382
PsuI	RGATCY	1 cut(s)	228
RsaI	GTAC	2 cut(s)	9, 442
RsaNI	GTAC	2 cut(s)	8, 441
RseI	CAYNNNNRTG	1 cut(s)	297
SacI	GAGCTC	1 cut(s)	336
SapI	GCTCTTC	1 cut(s)	435
SaqAI	TTAA	3 cut(s)	20, 327, 487
SatI	GCNGC	2 cut(s)	399, 426
Sau3AI	GATC	3 cut(s)	211, 228, 409
Sau96I	GGNCC	1 cut(s)	382
ScrFI	CCNGG	1 cut(s)	63
SduI	GDGCHC	1 cut(s)	336
SetI	ASST	5 cut(s)	127, 186, 219, 336, 446
SfaNI	GCATC	2 cut(s)	43, 410
SinI	GGWCC	1 cut(s)	382
SmiMI	CAYNNNNRTG	1 cut(s)	297
Sse9I	AATT	3 cut(s)	66, 150, 465
SspMI	CTAG	2 cut(s)	222, 405
SstI	GAGCTC	1 cut(s)	336
StyD4I	CCNGG	1 cut(s)	61
StyI	CCWWGG	1 cut(s)	105
TaqI	TCGA	1 cut(s)	121
TasI	AATT	3 cut(s)	66, 150, 465
TatI	WGTACW	1 cut(s)	7
TfiI	GAWTC	1 cut(s)	251
Tru1I	TTAA	3 cut(s)	20, 327, 487
Tru9I	TTAA	3 cut(s)	20, 327, 487
TseI	GCWGC	2 cut(s)	398, 425
TspDTI	ATGAA	3 cut(s)	130, 193, 339
VpaK11BI	GGWCC	1 cut(s)	382
XapI	RAATTY	1 cut(s)	66
XmiI	GTMKAC	1 cut(s)	195
XspI	CTAG	2 cut(s)	222, 405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.