Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006522

Physical Location & Seq

Genomic Coordinates Reverse (-)

9890902 .. 9894765

Gene Structure 3864 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36681

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1407 bp

ATGGATTTGCAGCCATCTTCAGGAGCACAGGTGTCTAAAGCTGATGCTAAAGTGGGTGATGTTTCTCAGGATTGTGAGACATTGCCAAAGTCTGAAAACATGGATTTGCAGCCATCTTCAACTGTACAGGAGTCTGAAGCTGAAGCTAACATTTCTGAGTCTTTTGGGAGAGAAGGTAGTGTTTCCCTCCGGTGTACCTGTATCACTAAGACTCCGGTGAACATGGCCGAAAACCAAAATTTGGAGGATAAAGCATGTTCTCGTGTGGAATTGAAGGTTTCTGAAACTGAGATGGGTGATATTTTGAATGCGTCAAAGGTATCGAACCAGCAGGCATCAGCAAGTTATCTAAAAGCAGTGAAGAGATCATATTTCATCAGTTCTAATAAGCACTTTGCTAACAATGACAAGAAAAAGGCAACGAAGCTTCTGAGGCCCCAACAGCACAAGGAGTCTCACATGGTCACCTTCTTTGTTGGTTTGTTCACAGGTTGCTTTGTATCGTTGTTTAATTGCAACTTGTTCATGTACGGGTGCAACCTGTGCATGTGGAAAAGTACTAGAATCAATTGCAACTTCATATTTGAATTCCAACTGAGCACTGCCTTAAAGTACCGTGATGCCTTCCTCATATGCACAACTTTTATGACGGCTGTGGTTGGTGCCATGGTTGTACATCTTATATTAAGGGCTAATAACTTCTTACCAAGCCAAGTTGATGCCATTCCTGAATTTATCCTTCTGTTTTCCATTGCCCTGCTGATATGCCCCTTGGACATCTTCTATCGACCTACTTGTTACTGCTTCATCAGAGTAATTCGAAACATAGTCTGTTCTCCACTTTATAAGATTCCATTGCTGAGACACATGGAATCCACAGCCTGCTACTTCATTGCTGGAAGTTTCAGAACACACCAATATAAGACTTGCAAAAGTAGAAGGCTATTTAAAGAGCTCGCTTATGTCATTTCATTCTTGCCGTACTACGGGCGTGCAATGCAGGTAACACTACCAAAGTTCCTATGCAGATTAATCCATGGTGGCAGCCGGACCAGGATTACATATGCTAACCAGCAGAATCATCTGTGGTTTTCTATAGTAGTGGTCCCTTCTGTGGTGGCTACAGTTTATCAGTTATACTGGGATTTTGTCAAGGATTGGGGGCTTTTCAACCCAAATTCCAAGAACCTATGGCTGAGAGATGAACTCATTCTGAAGAACAAAAGAACCTACTATTTTTCCTTGGCCTTGAATGCCGTTCTGAGAGTTGCTTGGGTGGAGACAGTTATGGGATTTCACAATATTTCATATGTCGAGTTAGAGAATGAGCATCTGAATAATGTTGGCAAGTTCAGGGCAGTCAAGACGGTTCCCCTACCATTCCGTGATGCGGATTCTGATGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000822 GO:0003674 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006082 GO:0006793 GO:0006797 GO:0006799 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006950 GO:0007154 GO:0007165 GO:0008144 GO:0008150 GO:0008152 GO:0008509 GO:0009058 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0012505 GO:0015075 GO:0015103 GO:0015114 GO:0015318 GO:0015698 GO:0016020 GO:0016036 GO:0019932 GO:0022857 GO:0023052 GO:0031667 GO:0031668 GO:0031669 GO:0031984 GO:0033554 GO:0034220 GO:0035435 GO:0035556 GO:0036094 GO:0042594 GO:0043167 GO:0043168 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048016 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0071496 GO:0071704 GO:0071944 GO:0098656 GO:0098660 GO:0098661 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EXS SPX

Protein Analysis

468

Amino Acids

53.41

Weight (kDa)

8.96

Isoelectric Point (pI)

42.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXS	PF03124	168 - 335	9.1e-19	EXS family
EXS	PF03124	355 - 434	4.3e-20	EXS family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23430
fragaria_vesca	FvH4_4g04040
malus_domestica	MD13G1216800.v1.1 MD16G1222100.v1.1
prunus_persica	Prupe.1G042500_v2.0.a1 Prupe.1G042500_v2.0.a1
pyrus_communis	pycom13g19040 pycom16g18640
rosa_chinensis	RchiOBHm_Chr4g0394311 RchiOBHm_Chr4g0394321
rosa_laevigata	RLG00000009703 RLG00000009704
rosa_multiflora	Rmu_ssc0000423.1_g000005 Rmu_ssc0000423.1_g000013
rosa_roxburghii	Rroxscaffold_5G00339380 Rroxscaffold_6G00430740
rosa_rugosa	Rorug03G0367000.1
rosa_samantha	Rh4AG051600 Rh4AG051900 Rh4BG048800 Rh4BG049300 Rh4CG055500 Rh4CG055900 Rh4DG049100
rosa_wichuraiana	Rw4G004130 Rw7G008900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	846
Acc36I	ACCTGC	1 cut(s)	991
AccB1I	GGYRCC	1 cut(s)	662
AccB7I	CCANNNNNTGG	1 cut(s)	241
AciI	CCGC	1 cut(s)	1391
AcoI	YGGCCR	1 cut(s)	225
AcsI	RAATTY	4 cut(s)	238, 587, 731, 1177
AcuI	CTGAAG	3 cut(s)	156, 162, 1235
AfaI	GTAC	7 cut(s)	126, 196, 530, 559, 614, 675, 983
AfiI	CCNNNNNNNGG	5 cut(s)	20, 241, 986, 1114, 1390
AgsI	TTSAA	6 cut(s)	120, 274, 307, 587, 1171, 1252
AjnI	CCWGG	1 cut(s)	1052
AluBI	AGCT	5 cut(s)	41, 140, 146, 427, 955
AluI	AGCT	5 cut(s)	41, 140, 146, 427, 955
Alw21I	GWGCWC	3 cut(s)	28, 602, 957
Alw26I	GTCTC	4 cut(s)	71, 459, 856, 1274
AoxI	GGCC	3 cut(s)	225, 434, 1245
ApeKI	GCWGC	3 cut(s)	10, 109, 1044
ApoI	RAATTY	4 cut(s)	238, 587, 731, 1177
AseI	ATTAAT	1 cut(s)	1031
Asp700I	GAANNNNTTC	1 cut(s)	1209
AspS9I	GGNCC	3 cut(s)	435, 1050, 1105
AsuHPI	GGTGA	4 cut(s)	68, 229, 308, 457
AsuII	TTCGAA	1 cut(s)	820
AvaII	GGWCC	2 cut(s)	1050, 1105
BanI	GGYRCC	1 cut(s)	662
BanII	GRGCYC	1 cut(s)	957
BauI	CACGAG	1 cut(s)	261
Bbv12I	GWGCWC	3 cut(s)	28, 602, 957
BbvI	GCAGC	3 cut(s)	22, 121, 1056
BccI	CCATC	4 cut(s)	22, 121, 286, 1394
BceAI	ACGGC	3 cut(s)	666, 964, 1241
BciT130I	CCWGG	1 cut(s)	1054
BcoDI	GTCTC	4 cut(s)	71, 459, 856, 1274
BfaI	CTAG	1 cut(s)	561
BfmI	CTRYAG	2 cut(s)	1095, 1122
BfuAI	ACCTGC	1 cut(s)	991
BisI	GCNGC	3 cut(s)	11, 110, 1045
BlsI	GCNGC	3 cut(s)	12, 111, 1046
BmcAI	AGTACT	1 cut(s)	559
Bme1390I	CCNGG	1 cut(s)	1054
Bme18I	GGWCC	2 cut(s)	1050, 1105
BmgT120I	GGNCC	3 cut(s)	435, 1050, 1105
BmiI	GGNNCC	4 cut(s)	437, 664, 1107, 1371
BmrFI	CCNGG	1 cut(s)	1054
BmrI	ACTGGG	1 cut(s)	1150
BmsI	GCATC	6 cut(s)	34, 344, 610, 709, 1339, 1378
BmuI	ACTGGG	1 cut(s)	1150
BplI	GAGNNNNNCTC	2 cut(s)	1191, 1223
Bpu14I	TTCGAA	1 cut(s)	820
BsaJI	CCNNGG	4 cut(s)	666, 771, 1036, 1242
BsaWI	WCCGGW	2 cut(s)	189, 214
BsaXI	ACNNNNNCTCC	6 cut(s)	15, 45, 160, 190, 196, 226
Bsc4I	CCNNNNNNNGG	5 cut(s)	20, 241, 986, 1114, 1390
Bse1I	ACTGG	1 cut(s)	1145
Bse3DI	GCAATG	5 cut(s)	80, 750, 854, 891, 1002
BseBI	CCWGG	1 cut(s)	1054
BseDI	CCNNGG	4 cut(s)	666, 771, 1036, 1242
BseLI	CCNNNNNNNGG	5 cut(s)	20, 241, 986, 1114, 1390
BseMI	GCAATG	5 cut(s)	80, 750, 854, 891, 1002
BseMII	CTCAG	8 cut(s)	80, 147, 279, 422, 587, 851, 1187, 1253
BseNI	ACTGG	1 cut(s)	1145
BseXI	GCAGC	3 cut(s)	22, 121, 1056
BshFI	GGCC	3 cut(s)	227, 436, 1247
BshNI	GGYRCC	1 cut(s)	662
BsiHKAI	GWGCWC	3 cut(s)	28, 602, 957
BsiSI	CCGG	3 cut(s)	190, 215, 1048
BslFI	GGGAC	1 cut(s)	1091
BslI	CCNNNNNNNGG	5 cut(s)	20, 241, 986, 1114, 1390
BsmAI	GTCTC	4 cut(s)	71, 459, 856, 1274
BsmFI	GGGAC	1 cut(s)	1091
BsmI	GAATGC	2 cut(s)	313, 1258
BsnI	GGCC	3 cut(s)	227, 436, 1247
Bsp119I	TTCGAA	1 cut(s)	820
Bsp1286I	GDGCHC	3 cut(s)	28, 602, 957
Bsp1407I	TGTACA	2 cut(s)	124, 673
Bsp143I	GATC	1 cut(s)	365
Bsp19I	CCATGG	2 cut(s)	666, 1036
BspACI	CCGC	1 cut(s)	1391
BspANI	GGCC	3 cut(s)	227, 436, 1247
BspCNI	CTCAG	8 cut(s)	79, 148, 280, 423, 588, 852, 1188, 1254
BspLI	GGNNCC	4 cut(s)	437, 664, 1107, 1371
BspMI	ACCTGC	1 cut(s)	991
BspT104I	TTCGAA	1 cut(s)	820
BspT107I	GGYRCC	1 cut(s)	662
BsrDI	GCAATG	5 cut(s)	80, 750, 854, 891, 1002
BsrGI	TGTACA	2 cut(s)	124, 673
BsrI	ACTGG	1 cut(s)	1145
BssECI	CCNNGG	4 cut(s)	666, 771, 1036, 1242
BssMI	GATC	1 cut(s)	365
BssSI	CACGAG	1 cut(s)	261
BssT1I	CCWWGG	4 cut(s)	666, 771, 1036, 1242
Bst2BI	CACGAG	1 cut(s)	261
Bst2UI	CCWGG	1 cut(s)	1054
Bst4CI	ACNGT	5 cut(s)	124, 617, 1126, 1285, 1369
Bst6I	CTCTTC	1 cut(s)	356
BstAPI	GCANNNNNTGC	1 cut(s)	543
BstAUI	TGTACA	2 cut(s)	124, 673
BstBI	TTCGAA	1 cut(s)	820
BstC8I	GCNNGC	4 cut(s)	333, 883, 957, 993
BstDEI	CTNAG	9 cut(s)	66, 156, 207, 288, 431, 596, 860, 1196, 1262
BstDSI	CCRYGG	2 cut(s)	666, 1036
BstEII	GGTNACC	1 cut(s)	463
BstKTI	GATC	1 cut(s)	368
BstMAI	GTCTC	4 cut(s)	71, 459, 856, 1274
BstMBI	GATC	1 cut(s)	365
BstMWI	GCNNNNNNNGC	5 cut(s)	433, 442, 543, 997, 1253
BstNI	CCWGG	1 cut(s)	1054
BstNSI	RCATGY	2 cut(s)	258, 550
BstPI	GGTNACC	1 cut(s)	463
BstSCI	CCNGG	1 cut(s)	1052
BstSFI	CTRYAG	2 cut(s)	1095, 1122
BstV1I	GCAGC	3 cut(s)	22, 121, 1056
BsuRI	GGCC	3 cut(s)	227, 436, 1247
BtgI	CCRYGG	2 cut(s)	666, 1036
BtsI	GCAGTG	2 cut(s)	363, 600
BtsIMutI	CAGTG	2 cut(s)	363, 600
BveI	ACCTGC	1 cut(s)	991
Cac8I	GCNNGC	4 cut(s)	333, 883, 957, 993
Cfr13I	GGNCC	3 cut(s)	435, 1050, 1105
CseI	GACGC	1 cut(s)	300
Csp6I	GTAC	7 cut(s)	125, 195, 529, 558, 613, 674, 982
CviAII	CATG	9 cut(s)	100, 223, 255, 460, 526, 547, 667, 868, 1037
CviQI	GTAC	7 cut(s)	125, 195, 529, 558, 613, 674, 982
DdeI	CTNAG	9 cut(s)	66, 156, 207, 288, 431, 596, 860, 1196, 1262
DpnI	GATC	1 cut(s)	367
DpnII	GATC	1 cut(s)	365
DraI	TTTAAA	1 cut(s)	949
EaeI	YGGCCR	1 cut(s)	225
Eam1104I	CTCTTC	1 cut(s)	356
EarI	CTCTTC	1 cut(s)	356
Ecl136II	GAGCTC	1 cut(s)	955
Eco130I	CCWWGG	4 cut(s)	666, 771, 1036, 1242
Eco24I	GRGCYC	1 cut(s)	957
Eco47I	GGWCC	2 cut(s)	1050, 1105
Eco53kI	GAGCTC	1 cut(s)	955
Eco57I	CTGAAG	3 cut(s)	156, 162, 1235
Eco91I	GGTNACC	1 cut(s)	463
EcoICRI	GAGCTC	1 cut(s)	955
EcoO109I	RGGNCCY	1 cut(s)	435
EcoO65I	GGTNACC	1 cut(s)	463
EcoRI	GAATTC	1 cut(s)	587
EcoRII	CCWGG	1 cut(s)	1052
EcoT14I	CCWWGG	4 cut(s)	666, 771, 1036, 1242
EcoT38I	GRGCYC	1 cut(s)	957
ErhI	CCWWGG	4 cut(s)	666, 771, 1036, 1242
FaeI	CATG	9 cut(s)	103, 226, 258, 463, 529, 550, 670, 871, 1040
FaqI	GGGAC	1 cut(s)	1091
FatI	CATG	9 cut(s)	99, 222, 254, 459, 525, 546, 666, 867, 1036
FauNDI	CATATG	3 cut(s)	632, 1063, 1309
Fnu4HI	GCNGC	3 cut(s)	11, 110, 1045
FriOI	GRGCYC	1 cut(s)	957
Fsp4HI	GCNGC	3 cut(s)	11, 110, 1045
FspBI	CTAG	1 cut(s)	561
GluI	GCNGC	3 cut(s)	11, 110, 1045
HaeIII	GGCC	3 cut(s)	227, 436, 1247
HapII	CCGG	3 cut(s)	190, 215, 1048
HgaI	GACGC	1 cut(s)	300
Hin1II	CATG	9 cut(s)	103, 226, 258, 463, 529, 550, 670, 871, 1040
HindIII	AAGCTT	1 cut(s)	425
HinfI	GANTC	9 cut(s)	131, 158, 211, 452, 564, 850, 872, 1078, 1394
HpaII	CCGG	3 cut(s)	190, 215, 1048
HphI	GGTGA	4 cut(s)	68, 229, 308, 457
Hpy166II	GTNNAC	3 cut(s)	195, 220, 486
Hpy188III	TCNNGA	4 cut(s)	21, 68, 728, 1363
Hpy8I	GTNNAC	3 cut(s)	195, 220, 486
HpyAV	CCTTC	7 cut(s)	167, 268, 478, 634, 749, 933, 1119
HpyCH4III	ACNGT	5 cut(s)	124, 617, 1126, 1285, 1369
HpyF10VI	GCNNNNNNNGC	5 cut(s)	433, 442, 543, 997, 1253
HpyF3I	CTNAG	9 cut(s)	66, 156, 207, 288, 431, 596, 860, 1196, 1262
Hsp92II	CATG	9 cut(s)	103, 226, 258, 463, 529, 550, 670, 871, 1040
Kzo9I	GATC	1 cut(s)	365
LmnI	GCTCC	1 cut(s)	23
Lsp1109I	GCAGC	3 cut(s)	22, 121, 1056
LweI	GCATC	6 cut(s)	34, 344, 610, 709, 1339, 1378
MaeI	CTAG	1 cut(s)	561
MaeIII	GTNAC	3 cut(s)	463, 797, 1003
MalI	GATC	1 cut(s)	367
MboI	GATC	1 cut(s)	365
MboII	GAAGA	5 cut(s)	9, 108, 373, 772, 1228
MfeI	CAATTG	1 cut(s)	568
MhlI	GDGCHC	3 cut(s)	28, 602, 957
MluCI	AATT	8 cut(s)	238, 269, 511, 568, 587, 731, 816, 1177
MlyI	GAGTC	4 cut(s)	140, 167, 205, 461
MmeI	TCCRAC	1 cut(s)	616
MnlI	CCTC	4 cut(s)	197, 238, 426, 638
MroXI	GAANNNNTTC	1 cut(s)	1209
MseI	TTAA	5 cut(s)	510, 608, 686, 948, 1031
MspI	CCGG	3 cut(s)	190, 215, 1048
MspR9I	CCNGG	1 cut(s)	1054
MunI	CAATTG	1 cut(s)	568
Mva1269I	GAATGC	2 cut(s)	313, 1258
MvaI	CCWGG	1 cut(s)	1054
MwoI	GCNNNNNNNGC	5 cut(s)	433, 442, 543, 997, 1253
NcoI	CCATGG	2 cut(s)	666, 1036
NdeI	CATATG	3 cut(s)	632, 1063, 1309
NdeII	GATC	1 cut(s)	365
NlaIII	CATG	9 cut(s)	103, 226, 258, 463, 529, 550, 670, 871, 1040
NlaIV	GGNNCC	4 cut(s)	437, 664, 1107, 1371
NmuCI	GTSAC	1 cut(s)	463
NspI	RCATGY	2 cut(s)	258, 550
NspV	TTCGAA	1 cut(s)	820
PctI	GAATGC	2 cut(s)	313, 1258
PdmI	GAANNNNTTC	1 cut(s)	1209
PfeI	GAWTC	5 cut(s)	564, 850, 872, 1078, 1394
PflMI	CCANNNNNTGG	1 cut(s)	241
PkrI	GCNGC	3 cut(s)	12, 111, 1046
PleI	GAGTC	4 cut(s)	139, 166, 205, 460
PpsI	GAGTC	4 cut(s)	139, 166, 205, 460
PshBI	ATTAAT	1 cut(s)	1031
PsiI	TTATAA	1 cut(s)	846
Psp124BI	GAGCTC	1 cut(s)	957
Psp6I	CCWGG	1 cut(s)	1052
PspEI	GGTNACC	1 cut(s)	463
PspGI	CCWGG	1 cut(s)	1052
PspN4I	GGNNCC	4 cut(s)	437, 664, 1107, 1371
PspPI	GGNCC	3 cut(s)	435, 1050, 1105
RsaI	GTAC	7 cut(s)	126, 196, 530, 559, 614, 675, 983
RsaNI	GTAC	7 cut(s)	125, 195, 529, 558, 613, 674, 982
SacI	GAGCTC	1 cut(s)	957
SaqAI	TTAA	5 cut(s)	510, 608, 686, 948, 1031
SatI	GCNGC	3 cut(s)	11, 110, 1045
Sau3AI	GATC	1 cut(s)	365
Sau96I	GGNCC	3 cut(s)	435, 1050, 1105
ScaI	AGTACT	1 cut(s)	559
SchI	GAGTC	4 cut(s)	140, 167, 205, 461
ScrFI	CCNGG	1 cut(s)	1054
SduI	GDGCHC	3 cut(s)	28, 602, 957
SfaNI	GCATC	6 cut(s)	34, 344, 610, 709, 1339, 1378
SfcI	CTRYAG	2 cut(s)	1095, 1122
SfuI	TTCGAA	1 cut(s)	820
SinI	GGWCC	2 cut(s)	1050, 1105
Sse9I	AATT	8 cut(s)	238, 269, 511, 568, 587, 731, 816, 1177
SsiI	CCGC	1 cut(s)	1391
SspI	AATATT	1 cut(s)	1303
SspMI	CTAG	1 cut(s)	561
SstI	GAGCTC	1 cut(s)	957
StyD4I	CCNGG	1 cut(s)	1052
StyI	CCWWGG	4 cut(s)	666, 771, 1036, 1242
TaaI	ACNGT	5 cut(s)	124, 617, 1126, 1285, 1369
TaqI	TCGA	4 cut(s)	323, 787, 820, 1314
TasI	AATT	8 cut(s)	238, 269, 511, 568, 587, 731, 816, 1177
TatI	WGTACW	3 cut(s)	124, 557, 673
TfiI	GAWTC	5 cut(s)	564, 850, 872, 1078, 1394
Tru1I	TTAA	5 cut(s)	510, 608, 686, 948, 1031
Tru9I	TTAA	5 cut(s)	510, 608, 686, 948, 1031
TscAI	CASTG	2 cut(s)	363, 607
TseFI	GTSAC	1 cut(s)	463
TseI	GCWGC	3 cut(s)	10, 109, 1044
Tsp45I	GTSAC	1 cut(s)	463
TspDTI	ATGAA	8 cut(s)	364, 514, 568, 796, 880, 960, 1218, 1296
TspGWI	ACGGA	1 cut(s)	1373
TspRI	CASTG	2 cut(s)	363, 607
Van91I	CCANNNNNTGG	1 cut(s)	241
VpaK11BI	GGWCC	2 cut(s)	1050, 1105
VspI	ATTAAT	1 cut(s)	1031
XapI	RAATTY	4 cut(s)	238, 587, 731, 1177
XceI	RCATGY	2 cut(s)	258, 550
XmnI	GAANNNNTTC	1 cut(s)	1209
XspI	CTAG	1 cut(s)	561
ZrmI	AGTACT	1 cut(s)	559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.