Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000423.1

Orthogroup ID

OG0006522

Physical Location & Seq

Genomic Coordinates Reverse (-)

29267 .. 32922

Gene Structure 3656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000423.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

atggacatggccgaaaaccaaaatttggaggataaagcatgttctggtgtggaattgaaggtttctgaaagtgagatgggtgatattttgaatgcgtcaaaggtatcgaaccagcaggctgatgcaagttatctaaaagcagtgaagagatcacatttcttcagttctaataagattccattgctgagacacatggaatccacagcctgctacttccttgctggaagtttcagaacacatcaatatgagacttgcaaaagtggaaggctatttaaagagctcgcttatgtcatttcattcttgcagtactactggcgtgcaatgcagtcacgattggtggactttctcttggcttcattagaggttatccggcgggggcattggaacttttacaggttagccaatgagcatctgaataatgttggcaagttcagggcagtcaagacagttcccctgccattccgtgatgcagattctgatggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000822 GO:0003674 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006082 GO:0006793 GO:0006797 GO:0006799 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006950 GO:0007154 GO:0007165 GO:0008144 GO:0008150 GO:0008152 GO:0008509 GO:0009058 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0012505 GO:0015075 GO:0015103 GO:0015114 GO:0015318 GO:0015698 GO:0016020 GO:0016036 GO:0019932 GO:0022857 GO:0023052 GO:0031667 GO:0031668 GO:0031669 GO:0031984 GO:0033554 GO:0034220 GO:0035435 GO:0035556 GO:0036094 GO:0042594 GO:0043167 GO:0043168 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048016 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0071496 GO:0071704 GO:0071944 GO:0098656 GO:0098660 GO:0098661 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EXS SPX

Protein Analysis

161

Amino Acids

18.51

Weight (kDa)

8.76

Isoelectric Point (pI)

36.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23430
fragaria_vesca	FvH4_4g04040
malus_domestica	MD13G1216800.v1.1 MD16G1222100.v1.1
prunus_persica	Prupe.1G042500_v2.0.a1 Prupe.1G042500_v2.0.a1
pyrus_communis	pycom13g19040 pycom16g18640
rosa_chinensis	RchiOBHm_Chr4g0394311 RchiOBHm_Chr4g0394321
rosa_laevigata	RLG00000009703 RLG00000009704
rosa_multiflora	Rmu_ssc0000423.1_g000005 Rmu_ssc0000423.1_g000013
rosa_roxburghii	Rroxscaffold_5G00339380 Rroxscaffold_6G00430740
rosa_rugosa	Rorug03G0367000.1
rosa_samantha	Rh4AG051600 Rh4AG051900 Rh4BG048800 Rh4BG049300 Rh4CG055500 Rh4CG055900 Rh4DG049100
rosa_wichuraiana	Rw4G004130 Rw7G008900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	25
AciI	CCGC	1 cut(s)	373
AcoI	YGGCCR	1 cut(s)	9
AcsI	RAATTY	1 cut(s)	22
AcuI	CTGAAG	1 cut(s)	145
AfaI	GTAC	1 cut(s)	308
AfiI	CCNNNNNNNGG	1 cut(s)	25
AgsI	TTSAA	2 cut(s)	58, 91
AluBI	AGCT	1 cut(s)	280
AluI	AGCT	1 cut(s)	280
Alw21I	GWGCWC	1 cut(s)	282
Alw26I	GTCTC	2 cut(s)	181, 242
AlwNI	CAGNNNCTG	1 cut(s)	476
AoxI	GGCC	1 cut(s)	9
ApoI	RAATTY	1 cut(s)	22
AsuHPI	GGTGA	1 cut(s)	92
BanII	GRGCYC	1 cut(s)	282
Bbv12I	GWGCWC	1 cut(s)	282
BccI	CCATC	2 cut(s)	70, 473
BcoDI	GTCTC	2 cut(s)	181, 242
BmcAI	AGTACT	1 cut(s)	308
BmsI	GCATC	3 cut(s)	112, 418, 457
Bsc4I	CCNNNNNNNGG	1 cut(s)	25
Bse1I	ACTGG	1 cut(s)	317
Bse3DI	GCAATG	2 cut(s)	179, 327
BseLI	CCNNNNNNNGG	1 cut(s)	25
BseMI	GCAATG	2 cut(s)	179, 327
BseMII	CTCAG	1 cut(s)	176
BseNI	ACTGG	1 cut(s)	317
BshFI	GGCC	1 cut(s)	11
BsiHKAI	GWGCWC	1 cut(s)	282
BsiSI	CCGG	1 cut(s)	370
BslI	CCNNNNNNNGG	1 cut(s)	25
BsmAI	GTCTC	2 cut(s)	181, 242
BsmI	GAATGC	1 cut(s)	97
BsnI	GGCC	1 cut(s)	11
Bsp1286I	GDGCHC	1 cut(s)	282
Bsp143I	GATC	1 cut(s)	149
BspACI	CCGC	1 cut(s)	373
BspANI	GGCC	1 cut(s)	11
BspCNI	CTCAG	1 cut(s)	177
BsrDI	GCAATG	2 cut(s)	179, 327
BsrI	ACTGG	1 cut(s)	317
BssMI	GATC	1 cut(s)	149
Bst4CI	ACNGT	1 cut(s)	448
Bst6I	CTCTTC	1 cut(s)	140
BstC8I	GCNNGC	4 cut(s)	117, 208, 282, 318
BstDEI	CTNAG	1 cut(s)	185
BstKTI	GATC	1 cut(s)	152
BstMAI	GTCTC	2 cut(s)	181, 242
BstMBI	GATC	1 cut(s)	149
BstMWI	GCNNNNNNNGC	1 cut(s)	322
BstNSI	RCATGY	1 cut(s)	42
BsuRI	GGCC	1 cut(s)	11
BtsI	GCAGTG	1 cut(s)	147
BtsIMutI	CAGTG	1 cut(s)	147
Cac8I	GCNNGC	4 cut(s)	117, 208, 282, 318
CaiI	CAGNNNCTG	1 cut(s)	476
CseI	GACGC	1 cut(s)	84
Csp6I	GTAC	1 cut(s)	307
CviAII	CATG	3 cut(s)	7, 39, 193
CviJI	RGCY	8 cut(s)	11, 119, 206, 268, 280, 353, 401, 483
CviKI_1	RGCY	8 cut(s)	11, 119, 206, 268, 280, 353, 401, 483
CviQI	GTAC	1 cut(s)	307
DdeI	CTNAG	1 cut(s)	185
DpnI	GATC	1 cut(s)	151
DpnII	GATC	1 cut(s)	149
DraI	TTTAAA	1 cut(s)	274
EaeI	YGGCCR	1 cut(s)	9
Eam1104I	CTCTTC	1 cut(s)	140
EarI	CTCTTC	1 cut(s)	140
Ecl136II	GAGCTC	1 cut(s)	280
Eco24I	GRGCYC	1 cut(s)	282
Eco53kI	GAGCTC	1 cut(s)	280
Eco57I	CTGAAG	1 cut(s)	145
EcoICRI	GAGCTC	1 cut(s)	280
EcoT38I	GRGCYC	1 cut(s)	282
FaeI	CATG	3 cut(s)	10, 42, 196
FaiI	YATR	5 cut(s)	8, 40, 194, 246, 288
FatI	CATG	3 cut(s)	6, 38, 192
FauI	CCCGC	1 cut(s)	366
FriOI	GRGCYC	1 cut(s)	282
HaeIII	GGCC	1 cut(s)	11
HapII	CCGG	1 cut(s)	370
HgaI	GACGC	1 cut(s)	84
Hin1II	CATG	3 cut(s)	10, 42, 196
HinfI	GANTC	3 cut(s)	175, 197, 473
HpaII	CCGG	1 cut(s)	370
HphI	GGTGA	1 cut(s)	92
Hpy166II	GTNNAC	1 cut(s)	340
Hpy188I	TCNGA	4 cut(s)	67, 233, 414, 478
Hpy188III	TCNNGA	2 cut(s)	330, 442
Hpy8I	GTNNAC	1 cut(s)	340
HpyAV	CCTTC	2 cut(s)	52, 258
HpyCH4III	ACNGT	1 cut(s)	448
HpyCH4V	TGCA	6 cut(s)	125, 255, 304, 320, 325, 470
HpyF10VI	GCNNNNNNNGC	1 cut(s)	322
HpyF3I	CTNAG	1 cut(s)	185
Hsp92II	CATG	3 cut(s)	10, 42, 196
Kzo9I	GATC	1 cut(s)	149
LweI	GCATC	3 cut(s)	112, 418, 457
MaeIII	GTNAC	1 cut(s)	327
MalI	GATC	1 cut(s)	151
MboI	GATC	1 cut(s)	149
MboII	GAAGA	2 cut(s)	151, 157
MhlI	GDGCHC	1 cut(s)	282
MluCI	AATT	2 cut(s)	22, 53
MnlI	CCTC	2 cut(s)	22, 355
MseI	TTAA	1 cut(s)	273
MslI	CAYNNNNRTG	1 cut(s)	243
MspI	CCGG	1 cut(s)	370
Mva1269I	GAATGC	1 cut(s)	97
MwoI	GCNNNNNNNGC	1 cut(s)	322
NdeII	GATC	1 cut(s)	149
NlaIII	CATG	3 cut(s)	10, 42, 196
NmuCI	GTSAC	1 cut(s)	327
NspI	RCATGY	1 cut(s)	42
PctI	GAATGC	1 cut(s)	97
PfeI	GAWTC	3 cut(s)	175, 197, 473
PflMI	CCANNNNNTGG	1 cut(s)	25
Psp124BI	GAGCTC	1 cut(s)	282
PstNI	CAGNNNCTG	1 cut(s)	476
RsaI	GTAC	1 cut(s)	308
RsaNI	GTAC	1 cut(s)	307
RseI	CAYNNNNRTG	1 cut(s)	243
SacI	GAGCTC	1 cut(s)	282
SaqAI	TTAA	1 cut(s)	273
Sau3AI	GATC	1 cut(s)	149
ScaI	AGTACT	1 cut(s)	308
SduI	GDGCHC	1 cut(s)	282
SetI	ASST	5 cut(s)	63, 105, 282, 366, 398
SfaNI	GCATC	3 cut(s)	112, 418, 457
SmiMI	CAYNNNNRTG	1 cut(s)	243
Sse9I	AATT	2 cut(s)	22, 53
SsiI	CCGC	1 cut(s)	373
SstI	GAGCTC	1 cut(s)	282
TaaI	ACNGT	1 cut(s)	448
TaqI	TCGA	1 cut(s)	107
TasI	AATT	2 cut(s)	22, 53
TatI	WGTACW	1 cut(s)	306
TfiI	GAWTC	3 cut(s)	175, 197, 473
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TscAI	CASTG	1 cut(s)	147
TseFI	GTSAC	1 cut(s)	327
Tsp45I	GTSAC	1 cut(s)	327
TspDTI	ATGAA	2 cut(s)	285, 345
TspGWI	ACGGA	1 cut(s)	452
TspRI	CASTG	1 cut(s)	147
Van91I	CCANNNNNTGG	1 cut(s)	25
XapI	RAATTY	1 cut(s)	22
XceI	RCATGY	1 cut(s)	42
ZrmI	AGTACT	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.