Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0006522

Physical Location & Seq

Genomic Coordinates Reverse (-)

10912390 .. 10913392

Gene Structure 1003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG055500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGAATCCACAGCCTGCTACTTCCTTGCTGGAAGTTTCAGAACACATCAATATGAGACTTGCAAAAGTGGAAGGCTATTTAAAGAGCTCGCTTATGTCATTTCATTCTTGCAGTACTACTGGCGTGCAATGCAGTGTGCAAGAAGATGGTTTGATCAGTCTGATGTCAACCATTTGGCTAACATGGGGAAAGGTTATCCAGCGGGGGCATTGAACTTTTACAGGTTAGCCAATGAGCATCTGAATAATTTTGGCAAGTTCAGGGCAGTCAAGACAGTTCCCCTGCCATTCCGTGATGCAAATTCTGATGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000822 GO:0003674 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006082 GO:0006793 GO:0006797 GO:0006799 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006950 GO:0007154 GO:0007165 GO:0008144 GO:0008150 GO:0008152 GO:0008509 GO:0009058 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0012505 GO:0015075 GO:0015103 GO:0015114 GO:0015318 GO:0015698 GO:0016020 GO:0016036 GO:0019932 GO:0022857 GO:0023052 GO:0031667 GO:0031668 GO:0031669 GO:0031984 GO:0033554 GO:0034220 GO:0035435 GO:0035556 GO:0036094 GO:0042594 GO:0043167 GO:0043168 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048016 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0071496 GO:0071704 GO:0071944 GO:0098656 GO:0098660 GO:0098661 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EXS SPX

Protein Analysis

104

Amino Acids

12.08

Weight (kDa)

9.3

Isoelectric Point (pI)

32.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXS	PF03124	2 - 68	1.8e-10	EXS family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23430
fragaria_vesca	FvH4_4g04040
malus_domestica	MD13G1216800.v1.1 MD16G1222100.v1.1
prunus_persica	Prupe.1G042500_v2.0.a1 Prupe.1G042500_v2.0.a1
pyrus_communis	pycom13g19040 pycom16g18640
rosa_chinensis	RchiOBHm_Chr4g0394311 RchiOBHm_Chr4g0394321
rosa_laevigata	RLG00000009703 RLG00000009704
rosa_multiflora	Rmu_ssc0000423.1_g000005 Rmu_ssc0000423.1_g000013
rosa_roxburghii	Rroxscaffold_5G00339380 Rroxscaffold_6G00430740
rosa_rugosa	Rorug03G0367000.1
rosa_samantha	Rh4AG051600 Rh4AG051900 Rh4BG048800 Rh4BG049300 Rh4CG055500 Rh4CG055900 Rh4DG049100
rosa_wichuraiana	Rw4G004130 Rw7G008900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	203
AcsI	RAATTY	1 cut(s)	301
AfaI	GTAC	1 cut(s)	116
AgsI	TTSAA	1 cut(s)	214
AluBI	AGCT	1 cut(s)	88
AluI	AGCT	1 cut(s)	88
Alw21I	GWGCWC	1 cut(s)	90
Alw26I	GTCTC	1 cut(s)	50
ApoI	RAATTY	1 cut(s)	301
BanII	GRGCYC	1 cut(s)	90
Bbv12I	GWGCWC	1 cut(s)	90
BccI	CCATC	2 cut(s)	141, 302
BclI	TGATCA	1 cut(s)	154
BcoDI	GTCTC	1 cut(s)	50
BmcAI	AGTACT	1 cut(s)	116
BmsI	GCATC	2 cut(s)	247, 286
Bse1I	ACTGG	1 cut(s)	125
Bse3DI	GCAATG	1 cut(s)	135
BseMI	GCAATG	1 cut(s)	135
BseNI	ACTGG	1 cut(s)	125
BsiHKAI	GWGCWC	1 cut(s)	90
BsmAI	GTCTC	1 cut(s)	50
Bsp1286I	GDGCHC	1 cut(s)	90
Bsp143I	GATC	1 cut(s)	154
BspACI	CCGC	1 cut(s)	203
BsrDI	GCAATG	1 cut(s)	135
BsrI	ACTGG	1 cut(s)	125
BssMI	GATC	1 cut(s)	154
Bst4CI	ACNGT	1 cut(s)	277
BstC8I	GCNNGC	3 cut(s)	16, 90, 126
BstKTI	GATC	1 cut(s)	157
BstMAI	GTCTC	1 cut(s)	50
BstMBI	GATC	1 cut(s)	154
BstMWI	GCNNNNNNNGC	1 cut(s)	130
BtsI	GCAGTG	1 cut(s)	140
BtsIMutI	CAGTG	1 cut(s)	140
Cac8I	GCNNGC	3 cut(s)	16, 90, 126
Csp6I	GTAC	1 cut(s)	115
CviAII	CATG	1 cut(s)	184
CviJI	RGCY	6 cut(s)	14, 76, 88, 179, 230, 312
CviKI_1	RGCY	6 cut(s)	14, 76, 88, 179, 230, 312
CviQI	GTAC	1 cut(s)	115
DpnI	GATC	1 cut(s)	156
DpnII	GATC	1 cut(s)	154
DraI	TTTAAA	1 cut(s)	82
Ecl136II	GAGCTC	1 cut(s)	88
Eco24I	GRGCYC	1 cut(s)	90
Eco53kI	GAGCTC	1 cut(s)	88
EcoICRI	GAGCTC	1 cut(s)	88
EcoT38I	GRGCYC	1 cut(s)	90
FaeI	CATG	1 cut(s)	187
FaiI	YATR	3 cut(s)	54, 96, 185
FatI	CATG	1 cut(s)	183
FauI	CCCGC	1 cut(s)	196
FbaI	TGATCA	1 cut(s)	154
FriOI	GRGCYC	1 cut(s)	90
Hin1II	CATG	1 cut(s)	187
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HinfI	GANTC	1 cut(s)	5
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	4 cut(s)	41, 163, 243, 307
Hpy188III	TCNNGA	1 cut(s)	271
Hpy8I	GTNNAC	1 cut(s)	169
HpyAV	CCTTC	1 cut(s)	66
HpyCH4III	ACNGT	1 cut(s)	277
HpyCH4V	TGCA	6 cut(s)	63, 112, 128, 133, 140, 299
HpyF10VI	GCNNNNNNNGC	1 cut(s)	130
Hsp92II	CATG	1 cut(s)	187
Ksp22I	TGATCA	1 cut(s)	154
Kzo9I	GATC	1 cut(s)	154
LpnPI	CCDG	7 cut(s)	15, 28, 106, 208, 213, 247, 296
LweI	GCATC	2 cut(s)	247, 286
MalI	GATC	1 cut(s)	156
MboI	GATC	1 cut(s)	154
MboII	GAAGA	1 cut(s)	156
MhlI	GDGCHC	1 cut(s)	90
MluCI	AATT	2 cut(s)	247, 301
MseI	TTAA	1 cut(s)	81
MslI	CAYNNNNRTG	1 cut(s)	51
MspA1I	CMGCKG	1 cut(s)	203
MwoI	GCNNNNNNNGC	1 cut(s)	130
NdeII	GATC	1 cut(s)	154
NlaIII	CATG	1 cut(s)	187
PfeI	GAWTC	1 cut(s)	5
Psp124BI	GAGCTC	1 cut(s)	90
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
RseI	CAYNNNNRTG	1 cut(s)	51
SacI	GAGCTC	1 cut(s)	90
SaqAI	TTAA	1 cut(s)	81
Sau3AI	GATC	1 cut(s)	154
ScaI	AGTACT	1 cut(s)	116
SduI	GDGCHC	1 cut(s)	90
SetI	ASST	3 cut(s)	90, 196, 227
SfaNI	GCATC	2 cut(s)	247, 286
SmiMI	CAYNNNNRTG	1 cut(s)	51
Sse9I	AATT	2 cut(s)	247, 301
SsiI	CCGC	1 cut(s)	203
SstI	GAGCTC	1 cut(s)	90
TaaI	ACNGT	1 cut(s)	277
TasI	AATT	2 cut(s)	247, 301
TatI	WGTACW	1 cut(s)	114
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TscAI	CASTG	1 cut(s)	140
TspDTI	ATGAA	1 cut(s)	93
TspGWI	ACGGA	1 cut(s)	281
TspRI	CASTG	1 cut(s)	140
XapI	RAATTY	1 cut(s)	301
ZrmI	AGTACT	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.