Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0006522

Physical Location & Seq

Genomic Coordinates Reverse (-)

50858392 .. 50867227

Gene Structure 8836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00430740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGAAGCTTCGAGGCCCCAACAGCACAAGGAGTCTCACAAGATTCCATTGCCGAGACACATGGAATCCACAACTGCTACTTGATTGCTGGAAGTTTCGAACACACCAATATGAGACTTGCAAAAGTAGAAGGCTATTTAAAGAGCTTGCTTATGACATTTCATTCTTGCCGTACTACTGGCGTGCAATGCAGTGTGCAAGAAGATGGTTTGATGAGTCCGATGTCAACCATTTGGCTAACAAGGGGAAGTATGTTTCAGCCATGGTGGCAGCCGGACCAGGATTACATATGCTAACCGCAGAATCATCCATGGATTATTTAACCCAAATTCCAAGAACCTATGGTCGAGAGATGAATTCATTCGAAGAACAAAAGAACCTACTATTTTTCCTTAGCCTTGAATGCGGTTCGAGAGTTGCTTGGGTGGAGATAGTTATGGGATTTCACAATATTTCATATGTCGAGTCACGATGGGTGGACTTTCTCTTGGCTTCATTAGAGCCTTTCTTTCAGAATCATGACCTCATCCCATTTGAAACTTTACCAAACCCAGTCAGGCCCTCTGGTAAGTACTACGTACTCCTTCACGTACCAAGTAATAAGCCAATTAGCCATTCCGACCATTCAATCTTCAACGCCCATTTCTCACCACAAATCACTAGCATGCGAAAGTCACGCCAAGCCATCAGACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000822 GO:0003674 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006082 GO:0006793 GO:0006797 GO:0006799 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006950 GO:0007154 GO:0007165 GO:0008144 GO:0008150 GO:0008152 GO:0008509 GO:0009058 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0012505 GO:0015075 GO:0015103 GO:0015114 GO:0015318 GO:0015698 GO:0016020 GO:0016036 GO:0019932 GO:0022857 GO:0023052 GO:0031667 GO:0031668 GO:0031669 GO:0031984 GO:0033554 GO:0034220 GO:0035435 GO:0035556 GO:0036094 GO:0042594 GO:0043167 GO:0043168 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048016 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0071496 GO:0071704 GO:0071944 GO:0098656 GO:0098660 GO:0098661 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EXS SPX

Protein Analysis

231

Amino Acids

27.19

Weight (kDa)

9.22

Isoelectric Point (pI)

45.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXS	PF03124	34 - 91	1.5e-11	EXS family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23430
fragaria_vesca	FvH4_4g04040
malus_domestica	MD13G1216800.v1.1 MD16G1222100.v1.1
prunus_persica	Prupe.1G042500_v2.0.a1 Prupe.1G042500_v2.0.a1
pyrus_communis	pycom13g19040 pycom16g18640
rosa_chinensis	RchiOBHm_Chr4g0394311 RchiOBHm_Chr4g0394321
rosa_laevigata	RLG00000009703 RLG00000009704
rosa_multiflora	Rmu_ssc0000423.1_g000005 Rmu_ssc0000423.1_g000013
rosa_roxburghii	Rroxscaffold_5G00339380 Rroxscaffold_6G00430740
rosa_rugosa	Rorug03G0367000.1
rosa_samantha	Rh4AG051600 Rh4AG051900 Rh4BG048800 Rh4BG049300 Rh4CG055500 Rh4CG055900 Rh4DG049100
rosa_wichuraiana	Rw4G004130 Rw7G008900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	297, 405
AcsI	RAATTY	2 cut(s)	327, 355
AfaI	GTAC	4 cut(s)	173, 572, 579, 591
AgsI	TTSAA	4 cut(s)	401, 536, 627, 634
AjnI	CCWGG	1 cut(s)	277
AjuI	GAANNNNNNNTTGG	2 cut(s)	598, 630
AluBI	AGCT	2 cut(s)	7, 145
AluI	AGCT	2 cut(s)	7, 145
Alw26I	GTCTC	3 cut(s)	38, 48, 107
AoxI	GGCC	2 cut(s)	13, 557
ApeKI	GCWGC	1 cut(s)	269
ApoI	RAATTY	2 cut(s)	327, 355
Asp700I	GAANNNNTTC	1 cut(s)	359
AspS9I	GGNCC	3 cut(s)	14, 275, 558
AsuHPI	GGTGA	1 cut(s)	639
AsuII	TTCGAA	2 cut(s)	97, 363
AvaII	GGWCC	1 cut(s)	275
BbvI	GCAGC	1 cut(s)	281
BccI	CCATC	3 cut(s)	198, 465, 692
BceAI	ACGGC	1 cut(s)	154
BciT130I	CCWGG	1 cut(s)	279
BcoDI	GTCTC	3 cut(s)	38, 48, 107
BfaI	CTAG	1 cut(s)	660
BglI	GCCNNNNNGGC	1 cut(s)	266
BisI	GCNGC	1 cut(s)	270
BlsI	GCNGC	1 cut(s)	271
BmcAI	AGTACT	1 cut(s)	572
Bme1390I	CCNGG	1 cut(s)	279
Bme18I	GGWCC	1 cut(s)	275
BmgT120I	GGNCC	3 cut(s)	14, 275, 558
BmiI	GGNNCC	1 cut(s)	16
BmrFI	CCNGG	1 cut(s)	279
BmrI	ACTGGG	1 cut(s)	545
BmuI	ACTGGG	1 cut(s)	545
Bpu10I	CCTNAGC	1 cut(s)	392
Bpu14I	TTCGAA	2 cut(s)	97, 363
BsaAI	YACGTR	2 cut(s)	577, 589
BsaJI	CCNNGG	2 cut(s)	261, 309
Bse1I	ACTGG	2 cut(s)	182, 551
Bse3DI	GCAATG	2 cut(s)	46, 192
BseBI	CCWGG	1 cut(s)	279
BseDI	CCNNGG	2 cut(s)	261, 309
BseGI	GGATG	2 cut(s)	305, 525
BseMI	GCAATG	2 cut(s)	46, 192
BseNI	ACTGG	2 cut(s)	182, 551
BseXI	GCAGC	1 cut(s)	281
BshFI	GGCC	2 cut(s)	15, 559
BsiSI	CCGG	1 cut(s)	273
BsmAI	GTCTC	3 cut(s)	38, 48, 107
BsmI	GAATGC	1 cut(s)	407
BsnI	GGCC	2 cut(s)	15, 559
Bsp119I	TTCGAA	2 cut(s)	97, 363
Bsp19I	CCATGG	2 cut(s)	261, 309
BspACI	CCGC	2 cut(s)	297, 405
BspANI	GGCC	2 cut(s)	15, 559
BspHI	TCATGA	1 cut(s)	517
BspLI	GGNNCC	1 cut(s)	16
BspT104I	TTCGAA	2 cut(s)	97, 363
BsrDI	GCAATG	2 cut(s)	46, 192
BsrI	ACTGG	2 cut(s)	182, 551
BssECI	CCNNGG	2 cut(s)	261, 309
BssT1I	CCWWGG	2 cut(s)	261, 309
Bst2UI	CCWGG	1 cut(s)	279
BstBAI	YACGTR	2 cut(s)	577, 589
BstBI	TTCGAA	2 cut(s)	97, 363
BstC8I	GCNNGC	3 cut(s)	147, 183, 665
BstDEI	CTNAG	1 cut(s)	392
BstDSI	CCRYGG	2 cut(s)	261, 309
BstF5I	GGATG	2 cut(s)	305, 525
BstMAI	GTCTC	3 cut(s)	38, 48, 107
BstMWI	GCNNNNNNNGC	4 cut(s)	21, 187, 266, 402
BstNI	CCWGG	1 cut(s)	279
BstNSI	RCATGY	1 cut(s)	667
BstSCI	CCNGG	1 cut(s)	277
BstSNI	TACGTA	1 cut(s)	577
BstV1I	GCAGC	1 cut(s)	281
BsuRI	GGCC	2 cut(s)	15, 559
BtgI	CCRYGG	2 cut(s)	261, 309
BtsCI	GGATG	2 cut(s)	305, 525
BtsI	GCAGTG	1 cut(s)	197
BtsIMutI	CAGTG	1 cut(s)	197
Cac8I	GCNNGC	3 cut(s)	147, 183, 665
CciI	TCATGA	1 cut(s)	517
Cfr13I	GGNCC	3 cut(s)	14, 275, 558
Csp6I	GTAC	4 cut(s)	172, 571, 578, 590
CviAII	CATG	5 cut(s)	60, 262, 310, 518, 664
CviQI	GTAC	4 cut(s)	172, 571, 578, 590
DdeI	CTNAG	1 cut(s)	392
DraI	TTTAAA	1 cut(s)	139
Eco105I	TACGTA	1 cut(s)	577
Eco130I	CCWWGG	2 cut(s)	261, 309
Eco47I	GGWCC	1 cut(s)	275
EcoO109I	RGGNCCY	2 cut(s)	14, 558
EcoRI	GAATTC	1 cut(s)	355
EcoRII	CCWGG	1 cut(s)	277
EcoT14I	CCWWGG	2 cut(s)	261, 309
ErhI	CCWWGG	2 cut(s)	261, 309
FaeI	CATG	5 cut(s)	63, 265, 313, 521, 667
FatI	CATG	5 cut(s)	59, 261, 309, 517, 663
FauNDI	CATATG	2 cut(s)	288, 457
Fnu4HI	GCNGC	1 cut(s)	270
FokI	GGATG	2 cut(s)	292, 512
Fsp4HI	GCNGC	1 cut(s)	270
FspBI	CTAG	1 cut(s)	660
GluI	GCNGC	1 cut(s)	270
HaeIII	GGCC	2 cut(s)	15, 559
HapII	CCGG	1 cut(s)	273
Hin1II	CATG	5 cut(s)	63, 265, 313, 521, 667
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HindIII	AAGCTT	1 cut(s)	5
HinfI	GANTC	7 cut(s)	31, 42, 64, 215, 302, 464, 514
HpaII	CCGG	1 cut(s)	273
HphI	GGTGA	1 cut(s)	639
Hpy166II	GTNNAC	2 cut(s)	226, 478
Hpy188I	TCNGA	4 cut(s)	220, 513, 619, 689
Hpy188III	TCNNGA	4 cut(s)	347, 411, 468, 518
Hpy8I	GTNNAC	2 cut(s)	226, 478
HpyAV	CCTTC	2 cut(s)	123, 593
HpyCH4IV	ACGT	2 cut(s)	576, 588
HpyCH4V	TGCA	4 cut(s)	120, 185, 190, 197
HpyF10VI	GCNNNNNNNGC	4 cut(s)	21, 187, 266, 402
HpyF3I	CTNAG	1 cut(s)	392
HpySE526I	ACGT	2 cut(s)	576, 588
Hsp92II	CATG	5 cut(s)	63, 265, 313, 521, 667
LpnPI	CCDG	8 cut(s)	73, 163, 264, 286, 291, 541, 549, 564
Lsp1109I	GCAGC	1 cut(s)	281
MaeI	CTAG	1 cut(s)	660
MaeII	ACGT	2 cut(s)	576, 588
MaeIII	GTNAC	2 cut(s)	465, 672
MboII	GAAGA	3 cut(s)	213, 377, 622
MluCI	AATT	3 cut(s)	327, 355, 606
MlyI	GAGTC	3 cut(s)	40, 224, 473
MmeI	TCCRAC	1 cut(s)	642
MnlI	CCTC	3 cut(s)	5, 533, 571
MroXI	GAANNNNTTC	1 cut(s)	359
MseI	TTAA	2 cut(s)	138, 320
MslI	CAYNNNNRTG	2 cut(s)	108, 662
MspI	CCGG	1 cut(s)	273
MspR9I	CCNGG	1 cut(s)	279
Mva1269I	GAATGC	1 cut(s)	407
MvaI	CCWGG	1 cut(s)	279
MwoI	GCNNNNNNNGC	4 cut(s)	21, 187, 266, 402
NcoI	CCATGG	2 cut(s)	261, 309
NdeI	CATATG	2 cut(s)	288, 457
NlaIII	CATG	5 cut(s)	63, 265, 313, 521, 667
NlaIV	GGNNCC	1 cut(s)	16
NmeAIII	GCCGAG	1 cut(s)	77
NmuCI	GTSAC	2 cut(s)	465, 672
NspI	RCATGY	1 cut(s)	667
NspV	TTCGAA	2 cut(s)	97, 363
PaeI	GCATGC	1 cut(s)	667
PagI	TCATGA	1 cut(s)	517
PctI	GAATGC	1 cut(s)	407
PdmI	GAANNNNTTC	1 cut(s)	359
PfeI	GAWTC	4 cut(s)	42, 64, 302, 514
PkrI	GCNGC	1 cut(s)	271
PleI	GAGTC	3 cut(s)	39, 223, 472
PpsI	GAGTC	3 cut(s)	39, 223, 472
Ppu21I	YACGTR	2 cut(s)	577, 589
Psp6I	CCWGG	1 cut(s)	277
PspGI	CCWGG	1 cut(s)	277
PspN4I	GGNNCC	1 cut(s)	16
PspPI	GGNCC	3 cut(s)	14, 275, 558
RsaI	GTAC	4 cut(s)	173, 572, 579, 591
RsaNI	GTAC	4 cut(s)	172, 571, 578, 590
RseI	CAYNNNNRTG	2 cut(s)	108, 662
SaqAI	TTAA	2 cut(s)	138, 320
SatI	GCNGC	1 cut(s)	270
Sau96I	GGNCC	3 cut(s)	14, 275, 558
ScaI	AGTACT	1 cut(s)	572
SchI	GAGTC	3 cut(s)	40, 224, 473
ScrFI	CCNGG	1 cut(s)	279
SetI	ASST	7 cut(s)	9, 147, 341, 381, 525, 579, 591
SfuI	TTCGAA	2 cut(s)	97, 363
SinI	GGWCC	1 cut(s)	275
SmiMI	CAYNNNNRTG	2 cut(s)	108, 662
SnaBI	TACGTA	1 cut(s)	577
SphI	GCATGC	1 cut(s)	667
Sse9I	AATT	3 cut(s)	327, 355, 606
SsiI	CCGC	2 cut(s)	297, 405
SspI	AATATT	1 cut(s)	451
SspMI	CTAG	1 cut(s)	660
StyD4I	CCNGG	1 cut(s)	277
StyI	CCWWGG	2 cut(s)	261, 309
TaiI	ACGT	2 cut(s)	579, 591
TaqI	TCGA	6 cut(s)	10, 97, 346, 363, 410, 462
TasI	AATT	3 cut(s)	327, 355, 606
TatI	WGTACW	1 cut(s)	570
TfiI	GAWTC	4 cut(s)	42, 64, 302, 514
Tru1I	TTAA	2 cut(s)	138, 320
Tru9I	TTAA	2 cut(s)	138, 320
TscAI	CASTG	1 cut(s)	197
TseFI	GTSAC	2 cut(s)	465, 672
TseI	GCWGC	1 cut(s)	269
Tsp45I	GTSAC	2 cut(s)	465, 672
TspDTI	ATGAA	6 cut(s)	17, 150, 348, 368, 444, 483
TspRI	CASTG	1 cut(s)	197
VpaK11BI	GGWCC	1 cut(s)	275
XapI	RAATTY	2 cut(s)	327, 355
XceI	RCATGY	1 cut(s)	667
XmnI	GAANNNNTTC	1 cut(s)	359
XspI	CTAG	1 cut(s)	660
ZrmI	AGTACT	1 cut(s)	572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.