Splicing factor U2AF
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G33435 |
| fragaria_vesca | FvH4_4g04160 FvH4_4g04160 FvH4_4g04160 |
| malus_domestica | MD13G1218500.v1.1 |
| prunus_persica | Prupe.1G045200_v2.0.a1 Prupe.1G045200_v2.0.a1 |
| pyrus_communis | pycom13g19340 |
| rosa_chinensis | RchiOBHm_Chr4g0394621 RchiOBHm_Chr4g0394661 |
| rosa_laevigata | RLG00000009679 RLG00000009684 |
| rosa_multiflora | Rmu_sc0005424.1_g000012 Rmu_sc0006945.1_g000040 |
| rosa_roxburghii | Rroxscaffold_5G00339670 |
| rosa_rugosa | Rorug03G0363100.1 Rorug03G0363500.1 Rorug03G0363600.1 Rorug03G0363700.1 |
| rosa_samantha | Rh4AG053300 Rh4AG054000 Rh4BG051200 Rh4BG051700 Rh4CG058500 Rh4DG050200 |
| rosa_wichuraiana | Rw4G004300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1858 |
| AccB1I | GGYRCC | 2 cut(s) | 1499, 1533 |
| AccBSI | CCGCTC | 1 cut(s) | 490 |
| AccI | GTMKAC | 4 cut(s) | 821, 1308, 1322, 1698 |
| AciI | CCGC | 4 cut(s) | 490, 844, 1727, 1809 |
| AclWI | GGATC | 8 cut(s) | 243, 284, 297, 835, 848, 1077, 2571, 2697 |
| AcoI | YGGCCR | 1 cut(s) | 1167 |
| AcsI | RAATTY | 3 cut(s) | 205, 733, 2201 |
| AcuI | CTGAAG | 4 cut(s) | 453, 459, 2061, 2322 |
| AcyI | GRCGYC | 1 cut(s) | 1534 |
| AfaI | GTAC | 3 cut(s) | 183, 1158, 1978 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 807, 2243 |
| AflII | CTTAAG | 1 cut(s) | 1016 |
| AflIII | ACRYGT | 1 cut(s) | 1143 |
| AgeI | ACCGGT | 1 cut(s) | 2217 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 490 |
| AhlI | ACTAGT | 1 cut(s) | 2153 |
| AjiI | CACGTC | 1 cut(s) | 9 |
| AjnI | CCWGG | 6 cut(s) | 880, 1393, 1967, 2029, 2144, 2577 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2357, 2389 |
| AleI | CACNNNNGTG | 2 cut(s) | 1343, 1614 |
| Alw21I | GWGCWC | 2 cut(s) | 8, 1905 |
| Alw26I | GTCTC | 3 cut(s) | 547, 627, 762 |
| AlwI | GGATC | 8 cut(s) | 243, 284, 297, 835, 848, 1077, 2571, 2697 |
| Ama87I | CYCGRG | 1 cut(s) | 2609 |
| AoxI | GGCC | 5 cut(s) | 92, 794, 959, 1167, 1286 |
| ApeKI | GCWGC | 5 cut(s) | 80, 644, 846, 1481, 2657 |
| ApoI | RAATTY | 3 cut(s) | 205, 733, 2201 |
| AseI | ATTAAT | 1 cut(s) | 2553 |
| AsiGI | ACCGGT | 1 cut(s) | 2217 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1938 |
| AspLEI | GCGC | 1 cut(s) | 1536 |
| AspS9I | GGNCC | 4 cut(s) | 959, 1264, 1870, 2575 |
| AsuC2I | CCSGG | 2 cut(s) | 2610, 2611 |
| AsuHPI | GGTGA | 3 cut(s) | 795, 978, 2017 |
| AsuII | TTCGAA | 2 cut(s) | 1605, 2539 |
| AvaI | CYCGRG | 1 cut(s) | 2609 |
| AvaII | GGWCC | 3 cut(s) | 1264, 1870, 2575 |
| BaeGI | GKGCMC | 1 cut(s) | 814 |
| BalI | TGGCCA | 1 cut(s) | 1169 |
| BamHI | GGATCC | 2 cut(s) | 289, 840 |
| BanI | GGYRCC | 2 cut(s) | 1499, 1533 |
| BanII | GRGCYC | 1 cut(s) | 2610 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1132, 1164 |
| BauI | CACGAG | 1 cut(s) | 559 |
| BbsI | GAAGAC | 3 cut(s) | 1140, 1365, 1476 |
| Bbv12I | GWGCWC | 2 cut(s) | 8, 1905 |
| BbvI | GCAGC | 5 cut(s) | 67, 631, 858, 1468, 2669 |
| BccI | CCATC | 5 cut(s) | 347, 951, 1033, 1159, 1490 |
| BceAI | ACGGC | 1 cut(s) | 1098 |
| BciT130I | CCWGG | 6 cut(s) | 882, 1395, 1969, 2031, 2146, 2579 |
| BciVI | GTATCC | 2 cut(s) | 772, 1674 |
| BclI | TGATCA | 1 cut(s) | 2722 |
| BcnI | CCSGG | 2 cut(s) | 2610, 2611 |
| BcoDI | GTCTC | 3 cut(s) | 547, 627, 762 |
| BcuI | ACTAGT | 1 cut(s) | 2153 |
| BfaI | CTAG | 7 cut(s) | 12, 42, 84, 680, 1197, 1614, 2154 |
| BfmI | CTRYAG | 2 cut(s) | 1767, 2238 |
| BfoI | RGCGCY | 1 cut(s) | 1537 |
| BfrI | CTTAAG | 1 cut(s) | 1016 |
| BfuAI | ACCTGC | 1 cut(s) | 1858 |
| BfuI | GTATCC | 2 cut(s) | 772, 1674 |
| BglII | AGATCT | 2 cut(s) | 578, 1674 |
| BisI | GCNGC | 5 cut(s) | 81, 645, 847, 1482, 2658 |
| BlpI | GCTNAGC | 1 cut(s) | 2083 |
| BlsI | GCNGC | 5 cut(s) | 82, 646, 848, 1483, 2659 |
| Bme1390I | CCNGG | 8 cut(s) | 882, 1395, 1969, 2031, 2146, 2579, 2610, 2611 |
| Bme18I | GGWCC | 3 cut(s) | 1264, 1870, 2575 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 490 |
| BmeT110I | CYCGRG | 1 cut(s) | 2609 |
| BmgBI | CACGTC | 1 cut(s) | 9 |
| BmgT120I | GGNCC | 4 cut(s) | 959, 1264, 1870, 2575 |
| BmiI | GGNNCC | 5 cut(s) | 291, 842, 931, 1501, 1535 |
| BmrFI | CCNGG | 8 cut(s) | 882, 1395, 1969, 2031, 2146, 2579, 2610, 2611 |
| BmsI | GCATC | 4 cut(s) | 1799, 2044, 2359, 2521 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1437 |
| BpiI | GAAGAC | 3 cut(s) | 1140, 1365, 1476 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1892, 1924 |
| BpmI | CTGGAG | 2 cut(s) | 2085, 2121 |
| Bpu10I | CCTNAGC | 1 cut(s) | 119 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2083 |
| Bpu14I | TTCGAA | 2 cut(s) | 1605, 2539 |
| BpuEI | CTTGAG | 1 cut(s) | 1919 |
| BpuMI | CCSGG | 2 cut(s) | 2610, 2611 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2586 |
| BsaHI | GRCGYC | 1 cut(s) | 1534 |
| BsaI | GGTCTC | 1 cut(s) | 762 |
| BsaWI | WCCGGW | 2 cut(s) | 1465, 2217 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1743, 1773 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 807, 2243 |
| Bse118I | RCCGGY | 1 cut(s) | 2217 |
| Bse1I | ACTGG | 3 cut(s) | 293, 962, 2104 |
| Bse3DI | GCAATG | 3 cut(s) | 1170, 1648, 2182 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2586 |
| BseBI | CCWGG | 6 cut(s) | 882, 1395, 1969, 2031, 2146, 2579 |
| BseGI | GGATG | 4 cut(s) | 1025, 1072, 1219, 1793 |
| BseJI | GATNNNNATC | 1 cut(s) | 2586 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 807, 2243 |
| BseMI | GCAATG | 3 cut(s) | 1170, 1648, 2182 |
| BseMII | CTCAG | 3 cut(s) | 1323, 1932, 2750 |
| BseNI | ACTGG | 3 cut(s) | 293, 962, 2104 |
| BseRI | GAGGAG | 1 cut(s) | 1309 |
| BseSI | GKGCMC | 1 cut(s) | 814 |
| BseXI | GCAGC | 5 cut(s) | 67, 631, 858, 1468, 2669 |
| BshFI | GGCC | 5 cut(s) | 94, 796, 961, 1169, 1288 |
| BshNI | GGYRCC | 2 cut(s) | 1499, 1533 |
| BshTI | ACCGGT | 1 cut(s) | 2217 |
| BsiHKAI | GWGCWC | 2 cut(s) | 8, 1905 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2609 |
| BsiSI | CCGG | 3 cut(s) | 1466, 2218, 2610 |
| BslFI | GGGAC | 1 cut(s) | 2047 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 807, 2243 |
| BsmAI | GTCTC | 3 cut(s) | 547, 627, 762 |
| BsmFI | GGGAC | 1 cut(s) | 2047 |
| BsmI | GAATGC | 3 cut(s) | 526, 1252, 2384 |
| BsnI | GGCC | 5 cut(s) | 94, 796, 961, 1169, 1288 |
| Bso31I | GGTCTC | 1 cut(s) | 762 |
| BsoBI | CYCGRG | 1 cut(s) | 2609 |
| Bsp119I | TTCGAA | 2 cut(s) | 1605, 2539 |
| Bsp1286I | GDGCHC | 4 cut(s) | 8, 814, 1905, 2610 |
| Bsp1407I | TGTACA | 1 cut(s) | 1156 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2083 |
| BspACI | CCGC | 4 cut(s) | 490, 844, 1727, 1809 |
| BspANI | GGCC | 5 cut(s) | 94, 796, 961, 1169, 1288 |
| BspCNI | CTCAG | 3 cut(s) | 1324, 1931, 2749 |
| BspLI | GGNNCC | 5 cut(s) | 291, 842, 931, 1501, 1535 |
| BspMAI | CTGCAG | 2 cut(s) | 1771, 2242 |
| BspMI | ACCTGC | 1 cut(s) | 1858 |
| BspPI | GGATC | 8 cut(s) | 243, 284, 297, 835, 848, 1077, 2571, 2697 |
| BspT104I | TTCGAA | 2 cut(s) | 1605, 2539 |
| BspT107I | GGYRCC | 2 cut(s) | 1499, 1533 |
| BspTI | CTTAAG | 1 cut(s) | 1016 |
| BspTNI | GGTCTC | 1 cut(s) | 762 |
| BsrBI | CCGCTC | 1 cut(s) | 490 |
| BsrDI | GCAATG | 3 cut(s) | 1170, 1648, 2182 |
| BsrFI | RCCGGY | 1 cut(s) | 2217 |
| BsrGI | TGTACA | 1 cut(s) | 1156 |
| BsrI | ACTGG | 3 cut(s) | 293, 962, 2104 |
| BssAI | RCCGGY | 1 cut(s) | 2217 |
| BssNAI | GTATAC | 1 cut(s) | 822 |
| BssNI | GRCGYC | 1 cut(s) | 1534 |
| BssSI | CACGAG | 1 cut(s) | 559 |
| BssT1I | CCWWGG | 3 cut(s) | 185, 806, 1797 |
| Bst1107I | GTATAC | 1 cut(s) | 822 |
| Bst2BI | CACGAG | 1 cut(s) | 559 |
| Bst2UI | CCWGG | 6 cut(s) | 882, 1395, 1969, 2031, 2146, 2579 |
| Bst6I | CTCTTC | 3 cut(s) | 102, 989, 2190 |
| BstACI | GRCGYC | 1 cut(s) | 1534 |
| BstAFI | CTTAAG | 1 cut(s) | 1016 |
| BstAUI | TGTACA | 1 cut(s) | 1156 |
| BstBI | TTCGAA | 2 cut(s) | 1605, 2539 |
| BstC8I | GCNNGC | 3 cut(s) | 279, 1572, 2238 |
| BstDEI | CTNAG | 7 cut(s) | 119, 1239, 1332, 1880, 1918, 2083, 2736 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 805 |
| BstF5I | GGATG | 4 cut(s) | 1025, 1072, 1219, 1793 |
| BstH2I | RGCGCY | 1 cut(s) | 1537 |
| BstHHI | GCGC | 1 cut(s) | 1536 |
| BstMAI | GTCTC | 3 cut(s) | 547, 627, 762 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 936, 945, 1481, 1775, 2430 |
| BstNI | CCWGG | 6 cut(s) | 882, 1395, 1969, 2031, 2146, 2579 |
| BstNSI | RCATGY | 3 cut(s) | 1147, 1574, 1725 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1437 |
| BstSCI | CCNGG | 8 cut(s) | 880, 1393, 1967, 2029, 2144, 2577, 2608, 2609 |
| BstSFI | CTRYAG | 2 cut(s) | 1767, 2238 |
| BstSLI | GKGCMC | 1 cut(s) | 814 |
| BstV1I | GCAGC | 5 cut(s) | 67, 631, 858, 1468, 2669 |
| BstV2I | GAAGAC | 3 cut(s) | 1140, 1365, 1476 |
| BstX2I | RGATCY | 4 cut(s) | 289, 578, 840, 1674 |
| BstYI | RGATCY | 4 cut(s) | 289, 578, 840, 1674 |
| BstZ17I | GTATAC | 1 cut(s) | 822 |
| BsuI | GTATCC | 2 cut(s) | 772, 1674 |
| BsuRI | GGCC | 5 cut(s) | 94, 796, 961, 1169, 1288 |
| BtgZI | GCGATG | 2 cut(s) | 929, 1848 |
| BtrI | CACGTC | 1 cut(s) | 9 |
| BtsCI | GGATG | 4 cut(s) | 1025, 1072, 1219, 1793 |
| BtsI | GCAGTG | 2 cut(s) | 1910, 2518 |
| BtsIMutI | CAGTG | 4 cut(s) | 300, 969, 1910, 2518 |
| BveI | ACCTGC | 1 cut(s) | 1858 |
| Cac8I | GCNNGC | 3 cut(s) | 279, 1572, 2238 |
| CfoI | GCGC | 1 cut(s) | 1536 |
| Cfr10I | RCCGGY | 1 cut(s) | 2217 |
| Cfr13I | GGNCC | 4 cut(s) | 959, 1264, 1870, 2575 |
| Cfr9I | CCCGGG | 1 cut(s) | 2609 |
| CseI | GACGC | 3 cut(s) | 1481, 2076, 2123 |
| Csp6I | GTAC | 3 cut(s) | 182, 1157, 1977 |
| CspAI | ACCGGT | 1 cut(s) | 2217 |
| CviQI | GTAC | 3 cut(s) | 182, 1157, 1977 |
| DdeI | CTNAG | 7 cut(s) | 119, 1239, 1332, 1880, 1918, 2083, 2736 |
| DinI | GGCGCC | 1 cut(s) | 1535 |
| DraI | TTTAAA | 1 cut(s) | 2652 |
| DriI | GACNNNNNGTC | 1 cut(s) | 490 |
| EaeI | YGGCCR | 1 cut(s) | 1167 |
| Eam1104I | CTCTTC | 3 cut(s) | 102, 989, 2190 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 490 |
| EarI | CTCTTC | 3 cut(s) | 102, 989, 2190 |
| Eco130I | CCWWGG | 3 cut(s) | 185, 806, 1797 |
| Eco147I | AGGCCT | 2 cut(s) | 94, 796 |
| Eco24I | GRGCYC | 1 cut(s) | 2610 |
| Eco31I | GGTCTC | 1 cut(s) | 762 |
| Eco32I | GATATC | 1 cut(s) | 855 |
| Eco47I | GGWCC | 3 cut(s) | 1264, 1870, 2575 |
| Eco57I | CTGAAG | 4 cut(s) | 453, 459, 2061, 2322 |
| Eco88I | CYCGRG | 1 cut(s) | 2609 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 805 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1870 |
| EcoRI | GAATTC | 1 cut(s) | 2201 |
| EcoRII | CCWGG | 6 cut(s) | 880, 1393, 1967, 2029, 2144, 2577 |
| EcoRV | GATATC | 1 cut(s) | 855 |
| EcoT14I | CCWWGG | 3 cut(s) | 185, 806, 1797 |
| EcoT22I | ATGCAT | 1 cut(s) | 1412 |
| EcoT38I | GRGCYC | 1 cut(s) | 2610 |
| EgeI | GGCGCC | 1 cut(s) | 1535 |
| EheI | GGCGCC | 1 cut(s) | 1535 |
| ErhI | CCWWGG | 3 cut(s) | 185, 806, 1797 |
| FaqI | GGGAC | 1 cut(s) | 2047 |
| FauI | CCCGC | 1 cut(s) | 1720 |
| FauNDI | CATATG | 1 cut(s) | 1822 |
| FbaI | TGATCA | 1 cut(s) | 2722 |
| FblI | GTMKAC | 4 cut(s) | 821, 1308, 1322, 1698 |
| Fnu4HI | GCNGC | 5 cut(s) | 81, 645, 847, 1482, 2658 |
| FokI | GGATG | 4 cut(s) | 1012, 1059, 1206, 1780 |
| FriOI | GRGCYC | 1 cut(s) | 2610 |
| Fsp4HI | GCNGC | 5 cut(s) | 81, 645, 847, 1482, 2658 |
| FspBI | CTAG | 7 cut(s) | 12, 42, 84, 680, 1197, 1614, 2154 |
| GlaI | GCGC | 1 cut(s) | 1535 |
| GluI | GCNGC | 5 cut(s) | 81, 645, 847, 1482, 2658 |
| GsuI | CTGGAG | 2 cut(s) | 2085, 2121 |
| HaeII | RGCGCY | 1 cut(s) | 1537 |
| HaeIII | GGCC | 5 cut(s) | 94, 796, 961, 1169, 1288 |
| HapII | CCGG | 3 cut(s) | 1466, 2218, 2610 |
| HgaI | GACGC | 3 cut(s) | 1481, 2076, 2123 |
| HhaI | GCGC | 1 cut(s) | 1536 |
| Hin1I | GRCGYC | 1 cut(s) | 1534 |
| Hin6I | GCGC | 1 cut(s) | 1534 |
| HinP1I | GCGC | 1 cut(s) | 1534 |
| HincII | GTYRAC | 1 cut(s) | 1258 |
| HindII | GTYRAC | 1 cut(s) | 1258 |
| HindIII | AAGCTT | 3 cut(s) | 397, 1877, 2422 |
| HpaII | CCGG | 3 cut(s) | 1466, 2218, 2610 |
| HphI | GGTGA | 3 cut(s) | 795, 978, 2017 |
| Hpy166II | GTNNAC | 6 cut(s) | 822, 1258, 1309, 1323, 1699, 2669 |
| Hpy188III | TCNNGA | 5 cut(s) | 309, 1678, 1898, 1943, 2064 |
| Hpy8I | GTNNAC | 6 cut(s) | 822, 1258, 1309, 1323, 1699, 2669 |
| HpyAV | CCTTC | 7 cut(s) | 292, 397, 434, 2071, 2204, 2297, 2566 |
| HpyCH4IV | ACGT | 2 cut(s) | 8, 2418 |
| HpyCH4V | TGCA | 9 cut(s) | 647, 1410, 1769, 1790, 1841, 1991, 2135, 2240, 2594 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 936, 945, 1481, 1775, 2430 |
| HpyF3I | CTNAG | 7 cut(s) | 119, 1239, 1332, 1880, 1918, 2083, 2736 |
| HpySE526I | ACGT | 2 cut(s) | 8, 2418 |
| Hsp92I | GRCGYC | 1 cut(s) | 1534 |
| HspAI | GCGC | 1 cut(s) | 1534 |
| KasI | GGCGCC | 1 cut(s) | 1533 |
| Ksp22I | TGATCA | 1 cut(s) | 2722 |
| LmnI | GCTCC | 3 cut(s) | 909, 935, 2102 |
| Lsp1109I | GCAGC | 5 cut(s) | 67, 631, 858, 1468, 2669 |
| LweI | GCATC | 4 cut(s) | 1799, 2044, 2359, 2521 |
| MaeI | CTAG | 7 cut(s) | 12, 42, 84, 680, 1197, 1614, 2154 |
| MaeII | ACGT | 2 cut(s) | 8, 2418 |
| MaeIII | GTNAC | 4 cut(s) | 1139, 1708, 2395, 2698 |
| MbiI | CCGCTC | 1 cut(s) | 490 |
| MflI | RGATCY | 4 cut(s) | 289, 578, 840, 1674 |
| MhlI | GDGCHC | 4 cut(s) | 8, 814, 1905, 2610 |
| MlsI | TGGCCA | 1 cut(s) | 1169 |
| MluNI | TGGCCA | 1 cut(s) | 1169 |
| Mly113I | GGCGCC | 1 cut(s) | 1534 |
| MlyI | GAGTC | 5 cut(s) | 233, 1015, 1016, 1253, 2150 |
| MmeI | TCCRAC | 3 cut(s) | 1291, 1879, 2497 |
| Mox20I | TGGCCA | 1 cut(s) | 1169 |
| Mph1103I | ATGCAT | 1 cut(s) | 1412 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1938 |
| MscI | TGGCCA | 1 cut(s) | 1169 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1343, 1405, 1614 |
| Msp20I | TGGCCA | 1 cut(s) | 1169 |
| MspA1I | CMGCKG | 1 cut(s) | 2353 |
| MspCI | CTTAAG | 1 cut(s) | 1016 |
| MspI | CCGG | 3 cut(s) | 1466, 2218, 2610 |
| MspR9I | CCNGG | 8 cut(s) | 882, 1395, 1969, 2031, 2146, 2579, 2610, 2611 |
| Mva1269I | GAATGC | 3 cut(s) | 526, 1252, 2384 |
| MvaI | CCWGG | 6 cut(s) | 882, 1395, 1969, 2031, 2146, 2579 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 936, 945, 1481, 1775, 2430 |
| NarI | GGCGCC | 1 cut(s) | 1534 |
| NciI | CCSGG | 2 cut(s) | 2610, 2611 |
| NdeI | CATATG | 1 cut(s) | 1822 |
| NlaIV | GGNNCC | 5 cut(s) | 291, 842, 931, 1501, 1535 |
| NmeAIII | GCCGAG | 1 cut(s) | 1264 |
| NmuCI | GTSAC | 1 cut(s) | 2698 |
| NsiI | ATGCAT | 1 cut(s) | 1412 |
| NspI | RCATGY | 3 cut(s) | 1147, 1574, 1725 |
| NspV | TTCGAA | 2 cut(s) | 1605, 2539 |
| OliI | CACNNNNGTG | 2 cut(s) | 1343, 1614 |
| PaeI | GCATGC | 1 cut(s) | 1574 |
| PasI | CCCWGGG | 1 cut(s) | 2030 |
| PceI | AGGCCT | 2 cut(s) | 94, 796 |
| PciI | ACATGT | 1 cut(s) | 1143 |
| PctI | GAATGC | 3 cut(s) | 526, 1252, 2384 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1938 |
| PflFI | GACNNNGTC | 1 cut(s) | 1262 |
| PinAI | ACCGGT | 1 cut(s) | 2217 |
| PkrI | GCNGC | 5 cut(s) | 82, 646, 848, 1483, 2659 |
| PleI | GAGTC | 5 cut(s) | 232, 1015, 1015, 1253, 2149 |
| PluTI | GGCGCC | 1 cut(s) | 1537 |
| PpsI | GAGTC | 5 cut(s) | 232, 1015, 1015, 1253, 2149 |
| PpuMI | RGGWCCY | 1 cut(s) | 1870 |
| PscI | ACATGT | 1 cut(s) | 1143 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1437 |
| PshBI | ATTAAT | 1 cut(s) | 2553 |
| Psp5II | RGGWCCY | 1 cut(s) | 1870 |
| Psp6I | CCWGG | 6 cut(s) | 880, 1393, 1967, 2029, 2144, 2577 |
| PspGI | CCWGG | 6 cut(s) | 880, 1393, 1967, 2029, 2144, 2577 |
| PspN4I | GGNNCC | 5 cut(s) | 291, 842, 931, 1501, 1535 |
| PspPI | GGNCC | 4 cut(s) | 959, 1264, 1870, 2575 |
| PspPPI | RGGWCCY | 1 cut(s) | 1870 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1299, 1331 |
| PstI | CTGCAG | 2 cut(s) | 1771, 2242 |
| PsuI | RGATCY | 4 cut(s) | 289, 578, 840, 1674 |
| PsyI | GACNNNGTC | 1 cut(s) | 1262 |
| PvuII | CAGCTG | 1 cut(s) | 2353 |
| RsaI | GTAC | 3 cut(s) | 183, 1158, 1978 |
| RsaNI | GTAC | 3 cut(s) | 182, 1157, 1977 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1343, 1405, 1614 |
| SatI | GCNGC | 5 cut(s) | 81, 645, 847, 1482, 2658 |
| Sau96I | GGNCC | 4 cut(s) | 959, 1264, 1870, 2575 |
| SchI | GAGTC | 5 cut(s) | 233, 1015, 1016, 1253, 2150 |
| ScrFI | CCNGG | 8 cut(s) | 882, 1395, 1969, 2031, 2146, 2579, 2610, 2611 |
| SduI | GDGCHC | 4 cut(s) | 8, 814, 1905, 2610 |
| SfaNI | GCATC | 4 cut(s) | 1799, 2044, 2359, 2521 |
| SfcI | CTRYAG | 2 cut(s) | 1767, 2238 |
| SfoI | GGCGCC | 1 cut(s) | 1535 |
| SfuI | TTCGAA | 2 cut(s) | 1605, 2539 |
| SinI | GGWCC | 3 cut(s) | 1264, 1870, 2575 |
| SmaI | CCCGGG | 1 cut(s) | 2611 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1343, 1405, 1614 |
| SmlI | CTYRAG | 2 cut(s) | 1016, 1898 |
| SmoI | CTYRAG | 2 cut(s) | 1016, 1898 |
| SpeI | ACTAGT | 1 cut(s) | 2153 |
| SphI | GCATGC | 1 cut(s) | 1574 |
| SseBI | AGGCCT | 2 cut(s) | 94, 796 |
| SsiI | CCGC | 4 cut(s) | 490, 844, 1727, 1809 |
| SspDI | GGCGCC | 1 cut(s) | 1533 |
| SspI | AATATT | 1 cut(s) | 2601 |
| SspMI | CTAG | 7 cut(s) | 12, 42, 84, 680, 1197, 1614, 2154 |
| StuI | AGGCCT | 2 cut(s) | 94, 796 |
| StyD4I | CCNGG | 8 cut(s) | 880, 1393, 1967, 2029, 2144, 2577, 2608, 2609 |
| StyI | CCWWGG | 3 cut(s) | 185, 806, 1797 |
| TaiI | ACGT | 2 cut(s) | 11, 2421 |
| TaqI | TCGA | 4 cut(s) | 539, 1109, 1605, 2539 |
| TaqII | GACCGA | 1 cut(s) | 1252 |
| TatI | WGTACW | 1 cut(s) | 1156 |
| TscAI | CASTG | 4 cut(s) | 300, 969, 1917, 2518 |
| TseFI | GTSAC | 1 cut(s) | 2698 |
| TseI | GCWGC | 5 cut(s) | 80, 644, 846, 1481, 2657 |
| Tsp45I | GTSAC | 1 cut(s) | 2698 |
| TspDTI | ATGAA | 8 cut(s) | 84, 636, 1119, 1208, 1757, 2309, 2378, 2571 |
| TspGWI | ACGGA | 1 cut(s) | 1308 |
| TspMI | CCCGGG | 1 cut(s) | 2609 |
| TspRI | CASTG | 4 cut(s) | 300, 969, 1917, 2518 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1262 |
| Vha464I | CTTAAG | 1 cut(s) | 1016 |
| VpaK11BI | GGWCC | 3 cut(s) | 1264, 1870, 2575 |
| VspI | ATTAAT | 1 cut(s) | 2553 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 805 |
| XapI | RAATTY | 3 cut(s) | 205, 733, 2201 |
| XceI | RCATGY | 3 cut(s) | 1147, 1574, 1725 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 950 |
| XmaI | CCCGGG | 1 cut(s) | 2609 |
| XmiI | GTMKAC | 4 cut(s) | 821, 1308, 1322, 1698 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1938 |
| XspI | CTAG | 7 cut(s) | 12, 42, 84, 680, 1197, 1614, 2154 |
| Zsp2I | ATGCAT | 1 cut(s) | 1412 |