pycom14g01230

Splicing factor U2af small subunit

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
Physical Location & Seq
Forward (+)
875304 .. 877971
2668 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1032 bp
ATGCAACATACAAGAATAAATTCGACATCTTCACACTTCGGAGGTTTCACAGCCATGGCGGAGCACTTGGCATCCATCTTCGGCACAGAGAAGGACCGCGTCAACTGCCCCTTCTACTTCAAGATCGAAGCTTGCCGGCACGGAGACCGCTGCTCCCGCCTCCACACCAAGCCCAGCATCAGCCCCACCCTCCTTCTCTCCAACATGTACCAGCGCCCCGATATGCTCACCAACCCGGGCGTCGACCCCCAGGGCCAAGCCCTCGACCCCCGCAAGATCCAGGACAACTTCGAGGATTTTTATGAGGATCTGTTCGAGGAGCTGAGCAAGTACGGACAGATCGAGAGCTTGAATATCTGTGACAATTTGGCTGACCACATGGTTGGTAATGTGTACGTTCAGTTCAGGGAGGAAGAACATGCTCAAGCTGCGCTTCAGAATCTCACTGGCAGGTTCTATGCAGGGCGTCCCATCATCGTCGACTTTTCCCCCGTGACGGATTTTCGTGAAGCTACCTGTAGGCAGTACGAAGAAAATGTATGCAATCGAGGTGGCTACTGCAACTTCATGCACTTGAAGAAAATTAGCAGGGAGTTGAGGAGGCGGTTATTTGGGAGAAACAAGCGAAGGCATAGTCGCAGTCGAAGCAGAAGCCGCAGTCCTCAAAGGCATCATCGTGGTGGTTATCAGGAGCGCCCGCATGGAGGTCGTGGTTTTGGTAGAAGAGGAGAAGATGACAGAGATCATCGTTTCAATGATAAGAGCAGGAGGCCTAGAAGCCGCAGTCCTGGGCGTAGAGGAAGAAGTAGAAGCCCTGTAGGTGCTGGGGGAAGGAGGAGGAGTCCTCCAGCCAGGGAAAGTAGTGCCGAAAGAAGGGCTAAGATCGAACAATGGAACAAGGAGCGGGAACAGGTGGACTCTGGAAATAAGTATGATGACAATAATAACAGCAACAATCAGGATGATCAATGGAATGGTTCTGCAGAGAACAATGATCAGTACTACGACGATCCTCATCAGCAGCAGCAGTAG

Protein Analysis

344

Amino Acids

40.0

Weight (kDa)

9.48

Isoelectric Point (pI)

78.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 102 - 158 1.6e-07 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 441
AccBSI CCGCTC 1 cut(s) 904
AccI GTMKAC 2 cut(s) 243, 480
AccII CGCG 1 cut(s) 99
AclWI GGATC 3 cut(s) 271, 315, 1004
AcsI RAATTY 1 cut(s) 19
AcuI CTGAAG 1 cut(s) 419
AcyI GRCGYC 2 cut(s) 240, 466
AfaI GTAC 5 cut(s) 209, 332, 395, 527, 1001
AfiI CCNNNNNNNGG 3 cut(s) 496, 704, 873
AflIII ACRYGT 1 cut(s) 204
AgsI TTSAA 4 cut(s) 121, 352, 577, 754
AjnI CCWGG 4 cut(s) 249, 279, 787, 851
AluBI AGCT 5 cut(s) 131, 322, 348, 428, 512
AluI AGCT 5 cut(s) 131, 322, 348, 428, 512
Alw21I GWGCWC 1 cut(s) 66
Alw26I GTCTC 1 cut(s) 138
AlwI GGATC 3 cut(s) 271, 315, 1004
Ama87I CYCGRG 1 cut(s) 235
AoxI GGCC 2 cut(s) 253, 770
ApeKI GCWGC 4 cut(s) 150, 428, 1021, 1024
ApoI RAATTY 1 cut(s) 19
ArsI GACNNNNNNTTYG 2 cut(s) 619, 651
Asp700I GAANNNNTTC 1 cut(s) 19
AspLEI GCGC 3 cut(s) 216, 433, 696
AspS9I GGNCC 2 cut(s) 94, 253
AsuC2I CCSGG 2 cut(s) 236, 237
AsuHPI GGTGA 1 cut(s) 220
AvaI CYCGRG 1 cut(s) 235
AvaII GGWCC 1 cut(s) 94
Bbv12I GWGCWC 1 cut(s) 66
BbvI GCAGC 2 cut(s) 137, 415
BccI CCATC 2 cut(s) 83, 479
BcgI CGANNNNNNTGC 2 cut(s) 689, 723
BciT130I CCWGG 4 cut(s) 251, 281, 789, 853
BclI TGATCA 2 cut(s) 964, 994
BcnI CCSGG 2 cut(s) 236, 237
BcoDI GTCTC 1 cut(s) 138
BfaI CTAG 1 cut(s) 774
BfmI CTRYAG 3 cut(s) 517, 816, 981
BfoI RGCGCY 2 cut(s) 217, 697
BfuAI ACCTGC 1 cut(s) 441
BisI GCNGC 6 cut(s) 151, 429, 655, 781, 1022, 1025
BlpI GCTNAGC 1 cut(s) 323
BlsI GCNGC 6 cut(s) 152, 430, 656, 782, 1023, 1026
BmcAI AGTACT 1 cut(s) 1001
Bme1390I CCNGG 6 cut(s) 236, 237, 251, 281, 789, 853
Bme18I GGWCC 1 cut(s) 94
BmeT110I CYCGRG 1 cut(s) 235
BmgT120I GGNCC 2 cut(s) 94, 253
BmrFI CCNGG 6 cut(s) 236, 237, 251, 281, 789, 853
BmsI GCATC 3 cut(s) 80, 186, 679
BplI GAGNNNNNCTC 2 cut(s) 829, 861
BpmI CTGGAG 1 cut(s) 831
Bpu1102I GCTNAGC 1 cut(s) 323
BpuEI CTTGAG 1 cut(s) 408
BpuMI CCSGG 2 cut(s) 236, 237
BsaBI GATNNNNATC 1 cut(s) 1014
BsaHI GRCGYC 2 cut(s) 240, 466
BsaI GGTCTC 1 cut(s) 138
BsaJI CCNNGG 6 cut(s) 54, 235, 249, 250, 788, 852
BsaXI ACNNNNNCTCC 4 cut(s) 137, 167, 826, 856
Bsc4I CCNNNNNNNGG 3 cut(s) 496, 704, 873
Bse118I RCCGGY 1 cut(s) 135
Bse1I ACTGG 1 cut(s) 451
Bse8I GATNNNNATC 1 cut(s) 1014
BseBI CCWGG 4 cut(s) 251, 281, 789, 853
BseDI CCNNGG 6 cut(s) 54, 235, 249, 250, 788, 852
BseGI GGATG 2 cut(s) 71, 967
BseJI GATNNNNATC 1 cut(s) 1014
BseLI CCNNNNNNNGG 3 cut(s) 496, 704, 873
BseMII CTCAG 1 cut(s) 314
BseNI ACTGG 1 cut(s) 451
BseRI GAGGAG 5 cut(s) 332, 613, 741, 850, 853
BseXI GCAGC 2 cut(s) 137, 415
BseYI CCCAGC 2 cut(s) 173, 824
Bsh1236I CGCG 1 cut(s) 99
BshFI GGCC 2 cut(s) 255, 772
BsiHKAI GWGCWC 1 cut(s) 66
BsiHKCI CYCGRG 1 cut(s) 235
BsiSI CCGG 2 cut(s) 136, 236
BslFI GGGAC 1 cut(s) 453
BslI CCNNNNNNNGG 3 cut(s) 496, 704, 873
BsmAI GTCTC 1 cut(s) 138
BsmFI GGGAC 1 cut(s) 453
BsnI GGCC 2 cut(s) 255, 772
Bso31I GGTCTC 1 cut(s) 138
BsoBI CYCGRG 1 cut(s) 235
Bsp1286I GDGCHC 1 cut(s) 66
Bsp143I GATC 9 cut(s) 123, 276, 307, 339, 742, 882, 964, 994, 1009
Bsp1720I GCTNAGC 1 cut(s) 323
Bsp19I CCATGG 1 cut(s) 54
BspANI GGCC 2 cut(s) 255, 772
BspCNI CTCAG 1 cut(s) 315
BspFNI CGCG 1 cut(s) 99
BspMAI CTGCAG 1 cut(s) 985
BspMI ACCTGC 1 cut(s) 441
BspPI GGATC 3 cut(s) 271, 315, 1004
BspTNI GGTCTC 1 cut(s) 138
BsrBI CCGCTC 1 cut(s) 904
BsrFI RCCGGY 1 cut(s) 135
BsrI ACTGG 1 cut(s) 451
BssAI RCCGGY 1 cut(s) 135
BssECI CCNNGG 6 cut(s) 54, 235, 249, 250, 788, 852
BssMI GATC 9 cut(s) 123, 276, 307, 339, 742, 882, 964, 994, 1009
BssNI GRCGYC 2 cut(s) 240, 466
BssT1I CCWWGG 1 cut(s) 54
Bst2UI CCWGG 4 cut(s) 251, 281, 789, 853
Bst6I CTCTTC 1 cut(s) 718
BstACI GRCGYC 2 cut(s) 240, 466
BstC8I GCNNGC 3 cut(s) 133, 137, 698
BstDEI CTNAG 2 cut(s) 323, 879
BstDSI CCRYGG 1 cut(s) 54
BstF5I GGATG 2 cut(s) 71, 967
BstFNI CGCG 1 cut(s) 99
BstH2I RGCGCY 2 cut(s) 217, 697
BstHHI GCGC 3 cut(s) 216, 433, 696
BstKTI GATC 9 cut(s) 126, 279, 310, 342, 745, 885, 967, 997, 1012
BstMAI GTCTC 1 cut(s) 138
BstMBI GATC 9 cut(s) 123, 276, 307, 339, 742, 882, 964, 994, 1009
BstMWI GCNNNNNNNGC 5 cut(s) 105, 156, 428, 645, 654
BstNI CCWGG 4 cut(s) 251, 281, 789, 853
BstNSI RCATGY 2 cut(s) 208, 422
BstSCI CCNGG 6 cut(s) 234, 235, 249, 279, 787, 851
BstSFI CTRYAG 3 cut(s) 517, 816, 981
BstUI CGCG 1 cut(s) 99
BstV1I GCAGC 2 cut(s) 137, 415
BstX2I RGATCY 2 cut(s) 276, 307
BstXI CCANNNNNNTGG 1 cut(s) 383
BstYI RGATCY 2 cut(s) 276, 307
BsuRI GGCC 2 cut(s) 255, 772
BtgI CCRYGG 1 cut(s) 54
BtsCI GGATG 2 cut(s) 71, 967
BtsIMutI CAGTG 1 cut(s) 444
BveI ACCTGC 1 cut(s) 441
Cac8I GCNNGC 3 cut(s) 133, 137, 698
CfoI GCGC 3 cut(s) 216, 433, 696
Cfr10I RCCGGY 1 cut(s) 135
Cfr13I GGNCC 2 cut(s) 94, 253
Cfr9I CCCGGG 1 cut(s) 235
CseI GACGC 3 cut(s) 88, 229, 455
Csp6I GTAC 5 cut(s) 208, 331, 394, 526, 1000
CspCI CAANNNNNGTGG 2 cut(s) 532, 567
CviAII CATG 6 cut(s) 55, 205, 379, 419, 568, 701
CviQI GTAC 5 cut(s) 208, 331, 394, 526, 1000
DdeI CTNAG 2 cut(s) 323, 879
DpnI GATC 9 cut(s) 125, 278, 309, 341, 744, 884, 966, 996, 1011
DpnII GATC 9 cut(s) 123, 276, 307, 339, 742, 882, 964, 994, 1009
Eam1104I CTCTTC 1 cut(s) 718
EarI CTCTTC 1 cut(s) 718
EciI GGCGGA 1 cut(s) 74
Eco130I CCWWGG 1 cut(s) 54
Eco147I AGGCCT 1 cut(s) 772
Eco31I GGTCTC 1 cut(s) 138
Eco47I GGWCC 1 cut(s) 94
Eco57I CTGAAG 1 cut(s) 419
Eco88I CYCGRG 1 cut(s) 235
EcoRII CCWGG 4 cut(s) 249, 279, 787, 851
EcoT14I CCWWGG 1 cut(s) 54
ErhI CCWWGG 1 cut(s) 54
FaeI CATG 6 cut(s) 58, 208, 382, 422, 571, 704
FalI AAGNNNNNCTT 2 cut(s) 417, 449
FaqI GGGAC 1 cut(s) 453
FatI CATG 6 cut(s) 54, 204, 378, 418, 567, 700
FauI CCCGC 4 cut(s) 164, 278, 705, 897
FbaI TGATCA 2 cut(s) 964, 994
FblI GTMKAC 2 cut(s) 243, 480
Fnu4HI GCNGC 6 cut(s) 151, 429, 655, 781, 1022, 1025
FokI GGATG 2 cut(s) 58, 974
Fsp4HI GCNGC 6 cut(s) 151, 429, 655, 781, 1022, 1025
FspBI CTAG 1 cut(s) 774
GlaI GCGC 3 cut(s) 215, 432, 695
GluI GCNGC 6 cut(s) 151, 429, 655, 781, 1022, 1025
GsaI CCCAGC 2 cut(s) 177, 828
GsuI CTGGAG 1 cut(s) 831
HaeII RGCGCY 2 cut(s) 217, 697
HaeIII GGCC 2 cut(s) 255, 772
HapII CCGG 2 cut(s) 136, 236
HgaI GACGC 3 cut(s) 88, 229, 455
HhaI GCGC 3 cut(s) 216, 433, 696
Hin1I GRCGYC 2 cut(s) 240, 466
Hin1II CATG 6 cut(s) 58, 208, 382, 422, 571, 704
Hin6I GCGC 3 cut(s) 214, 431, 694
HinP1I GCGC 3 cut(s) 214, 431, 694
HincII GTYRAC 3 cut(s) 103, 244, 481
HindII GTYRAC 3 cut(s) 103, 244, 481
HindIII AAGCTT 1 cut(s) 129
HinfI GANTC 3 cut(s) 439, 841, 917
HpaII CCGG 2 cut(s) 136, 236
HphI GGTGA 1 cut(s) 220
Hpy166II GTNNAC 5 cut(s) 103, 244, 394, 481, 916
Hpy188I TCNGA 2 cut(s) 41, 438
Hpy188III TCNNGA 6 cut(s) 121, 343, 506, 689, 921, 959
Hpy8I GTNNAC 5 cut(s) 103, 244, 394, 481, 916
Hpy99I CGWCG 3 cut(s) 245, 482, 1010
HpyAV CCTTC 6 cut(s) 85, 121, 203, 621, 825, 867
HpyCH4IV ACGT 1 cut(s) 396
HpyCH4V TGCA 6 cut(s) 4, 461, 543, 561, 571, 983
HpyF10VI GCNNNNNNNGC 5 cut(s) 105, 156, 428, 645, 654
HpyF3I CTNAG 2 cut(s) 323, 879
HpySE526I ACGT 1 cut(s) 396
Hsp92I GRCGYC 2 cut(s) 240, 466
Hsp92II CATG 6 cut(s) 58, 208, 382, 422, 571, 704
HspAI GCGC 3 cut(s) 214, 431, 694
KroI GCCGGC 1 cut(s) 135
KroNI GCCGGC 1 cut(s) 137
Ksp22I TGATCA 2 cut(s) 964, 994
Kzo9I GATC 9 cut(s) 123, 276, 307, 339, 742, 882, 964, 994, 1009
LmnI GCTCC 5 cut(s) 61, 158, 319, 691, 901
Lsp1109I GCAGC 2 cut(s) 137, 415
LweI GCATC 3 cut(s) 80, 186, 679
MaeI CTAG 1 cut(s) 774
MaeII ACGT 1 cut(s) 396
MaeIII GTNAC 2 cut(s) 359, 493
MalI GATC 9 cut(s) 125, 278, 309, 341, 744, 884, 966, 996, 1011
MbiI CCGCTC 1 cut(s) 904
MboI GATC 9 cut(s) 123, 276, 307, 339, 742, 882, 964, 994, 1009
MboII GAAGA 8 cut(s) 21, 70, 425, 542, 589, 735, 743, 813
MflI RGATCY 2 cut(s) 276, 307
MhlI GDGCHC 1 cut(s) 66
MluCI AATT 3 cut(s) 19, 364, 582
MlyI GAGTC 2 cut(s) 850, 911
MmeI TCCRAC 1 cut(s) 225
MroNI GCCGGC 1 cut(s) 135
MroXI GAANNNNTTC 1 cut(s) 19
MslI CAYNNNNRTG 3 cut(s) 53, 675, 678
MspA1I CMGCKG 1 cut(s) 150
MspI CCGG 2 cut(s) 136, 236
MspR9I CCNGG 6 cut(s) 236, 237, 251, 281, 789, 853
MvaI CCWGG 4 cut(s) 251, 281, 789, 853
MvnI CGCG 1 cut(s) 99
MwoI GCNNNNNNNGC 5 cut(s) 105, 156, 428, 645, 654
NaeI GCCGGC 1 cut(s) 137
NciI CCSGG 2 cut(s) 236, 237
NcoI CCATGG 1 cut(s) 54
NdeII GATC 9 cut(s) 123, 276, 307, 339, 742, 882, 964, 994, 1009
NgoMIV GCCGGC 1 cut(s) 135
NlaIII CATG 6 cut(s) 58, 208, 382, 422, 571, 704
NmuCI GTSAC 2 cut(s) 359, 493
NspI RCATGY 2 cut(s) 208, 422
PasI CCCWGGG 1 cut(s) 250
PceI AGGCCT 1 cut(s) 772
PciI ACATGT 1 cut(s) 204
PcsI WCGNNNNNNNCGW 1 cut(s) 339
PdiI GCCGGC 1 cut(s) 137
PdmI GAANNNNTTC 1 cut(s) 19
PfeI GAWTC 1 cut(s) 439
PflFI GACNNNGTC 1 cut(s) 98
PfoI TCCNGGA 1 cut(s) 279
PkrI GCNGC 6 cut(s) 152, 430, 656, 782, 1023, 1026
PleI GAGTC 2 cut(s) 849, 911
PpsI GAGTC 2 cut(s) 849, 911
PscI ACATGT 1 cut(s) 204
Psp6I CCWGG 4 cut(s) 249, 279, 787, 851
PspFI CCCAGC 2 cut(s) 173, 824
PspGI CCWGG 4 cut(s) 249, 279, 787, 851
PspPI GGNCC 2 cut(s) 94, 253
PsrI GAACNNNNNNTAC 2 cut(s) 386, 418
PstI CTGCAG 1 cut(s) 985
PsuI RGATCY 2 cut(s) 276, 307
PsyI GACNNNGTC 1 cut(s) 98
RsaI GTAC 5 cut(s) 209, 332, 395, 527, 1001
RsaNI GTAC 5 cut(s) 208, 331, 394, 526, 1000
RseI CAYNNNNRTG 3 cut(s) 53, 675, 678
SalI GTCGAC 2 cut(s) 242, 479
SatI GCNGC 6 cut(s) 151, 429, 655, 781, 1022, 1025
Sau3AI GATC 9 cut(s) 123, 276, 307, 339, 742, 882, 964, 994, 1009
Sau96I GGNCC 2 cut(s) 94, 253
ScaI AGTACT 1 cut(s) 1001
SchI GAGTC 2 cut(s) 850, 911
ScrFI CCNGG 6 cut(s) 236, 237, 251, 281, 789, 853
SduI GDGCHC 1 cut(s) 66
SfaNI GCATC 3 cut(s) 80, 186, 679
SfcI CTRYAG 3 cut(s) 517, 816, 981
SinI GGWCC 1 cut(s) 94
SmaI CCCGGG 1 cut(s) 237
SmiMI CAYNNNNRTG 3 cut(s) 53, 675, 678
SmlI CTYRAG 1 cut(s) 423
SmoI CTYRAG 1 cut(s) 423
Sse9I AATT 3 cut(s) 19, 364, 582
SseBI AGGCCT 1 cut(s) 772
SspMI CTAG 1 cut(s) 774
StuI AGGCCT 1 cut(s) 772
StyD4I CCNGG 6 cut(s) 234, 235, 249, 279, 787, 851
StyI CCWWGG 1 cut(s) 54
TaiI ACGT 1 cut(s) 399
TasI AATT 3 cut(s) 19, 364, 582
TatI WGTACW 1 cut(s) 999
TauI GCSGC 2 cut(s) 657, 783
TfiI GAWTC 1 cut(s) 439
TscAI CASTG 1 cut(s) 451
TseFI GTSAC 2 cut(s) 359, 493
TseI GCWGC 4 cut(s) 150, 428, 1021, 1024
Tsp45I GTSAC 2 cut(s) 359, 493
TspDTI ATGAA 1 cut(s) 556
TspGWI ACGGA 3 cut(s) 156, 348, 512
TspMI CCCGGG 1 cut(s) 235
TspRI CASTG 1 cut(s) 451
Tth111I GACNNNGTC 1 cut(s) 98
VpaK11BI GGWCC 1 cut(s) 94
XapI RAATTY 1 cut(s) 19
XceI RCATGY 2 cut(s) 208, 422
XmaI CCCGGG 1 cut(s) 235
XmiI GTMKAC 2 cut(s) 243, 480
XmnI GAANNNNTTC 1 cut(s) 19
XspI CTAG 1 cut(s) 774
ZrmI AGTACT 1 cut(s) 1001
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.