pycom14g03720

Ring finger domain

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
Physical Location & Seq
Reverse (-)
3120205 .. 3124277
4073 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1191 bp
ATGGTGATTCCAAATAAAATGGAGGCAAAGGAGGCTGAAAGTCATATGATATCAGCTGTTGCATTTGTGGAAGGGGGAATACAAGAGGATTATGGCGAGGCCTGCAGCATATGCCTTGATGAGTTTTGCGACAGTGATCCATCAGTGATTCTGTGTCTTGCTTTGCAGGTTACTTCTTGCAAGCATGAGTTTCACCTCCACTGCATCCTTGAGTGGTGCCAGCGAAGCTCTCAATGTCCCATGTGTTGGCAACCCATTAGCTTGAAGGATCCTTGCAGTCAAGAATTACTGGAGGGAGTAGAACAGGAGAGAAGATTTAGGGAGACAGCTAGAAATGCAACTATATTTCATCATCCCACCCTTGGCGATTTTCAATTTCAGCATTTACCTGTGGGTACTGCCAATGCTGAACTTGAAGAGCACATCATTCAGCACTTGGCCGCTGCTGCTTCTATGGGAAGGGCCCACCACCATGGTAGAAGAGAAAGCCATAGGAGCCGATCATCTGCTCGTGGTCATCCACACTTGTCGGTACCTTCTACACATCCTAGTGCATCTCCTCTTGGTCCTGTTCATGCCCCAGGAGGGGACAGTGAACCAGCTGAAATAACTGTAGCAAGTCCATCTACCCCACTTACTTCAGATGTGGATGAATCATCACGAAGTAGTGCACAATATCCTTCTGTTCAGACTGACGGAATTTCTTCCTTACCATCTGGGTCTTCACGCGTGCATAGAAATCGTCAAGGAAATTCCTCTAGTCATTGGAGCTCTACTAGCCATGCCTCATCTTTGGATCAGGACAGAGCAGGACCATCAGAACTTCACTCTCTTTCAGAGTCTCTGAAATCTAAGCTTAATTCCATGTCAATGAGGTACAAGGAATCGTTTTCGAGGAGTACACGAGGATTGAAGGAGAGGCTGTTCTCCCGTAGCCCTTCTATGTCGGAACTCAGTTCTGAAGTTCGTAGAGAGGTGAATGCTGGAATTGCCACCGTATCTCGAATGATGGAGCGCCTTGAGACAAGAGATAATAGTACAGACAACCAGTCTTCTGGAGTGAATCAGAATGCAGATGGTTCTGCTGCAGAGCAGAGCAACCAGAACCGTGCAGAGATCCGTGGAGAAAACCCTTTGAGTGACAACAATAGGCCTGGTACTACTTGTGCCGCAGGTTCCACTTCACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

397

Amino Acids

43.19

Weight (kDa)

5.98

Isoelectric Point (pI)

60.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 34 - 82 9.6e-08 Ring finger domain
zf-rbx1 PF12678 34 - 82 1.4e-06 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 157, 1163
Acc65I GGTACC 1 cut(s) 532
AccB1I GGYRCC 2 cut(s) 216, 532
AccB7I CCANNNNNTGG 1 cut(s) 246
AccII CGCG 1 cut(s) 729
AciI CCGC 2 cut(s) 441, 1170
AclWI GGATC 5 cut(s) 131, 263, 276, 804, 1111
AcoI YGGCCR 1 cut(s) 438
AcsI RAATTY 2 cut(s) 699, 751
AcuI CTGAAG 2 cut(s) 624, 981
AfaI GTAC 6 cut(s) 397, 534, 878, 901, 1039, 1159
AfiI CCNNNNNNNGG 4 cut(s) 246, 362, 585, 586
AflIII ACRYGT 1 cut(s) 727
AgsI TTSAA 4 cut(s) 265, 374, 416, 913
AhdI GACNNNNNGTC 1 cut(s) 1048
AjnI CCWGG 2 cut(s) 580, 1153
AloI GAACNNNNNNTCC 2 cut(s) 908, 940
AluBI AGCT 7 cut(s) 56, 228, 261, 329, 602, 771, 856
AluI AGCT 7 cut(s) 56, 228, 261, 329, 602, 771, 856
Alw21I GWGCWC 3 cut(s) 423, 673, 773
Alw26I GTCTC 3 cut(s) 317, 846, 1016
Alw44I GTGCAC 1 cut(s) 669
AlwI GGATC 5 cut(s) 131, 263, 276, 804, 1111
AoxI GGCC 4 cut(s) 99, 438, 462, 1151
ApaI GGGCCC 1 cut(s) 466
ApaLI GTGCAC 1 cut(s) 669
ApeKI GCWGC 4 cut(s) 105, 443, 446, 1085
ApoI RAATTY 2 cut(s) 699, 751
Asp700I GAANNNNTTC 1 cut(s) 703
Asp718I GGTACC 1 cut(s) 532
AspLEI GCGC 1 cut(s) 1017
AspS9I GGNCC 4 cut(s) 462, 463, 566, 812
AsuHPI GGTGA 3 cut(s) 16, 185, 988
AvaII GGWCC 2 cut(s) 566, 812
BaeGI GKGCMC 2 cut(s) 466, 673
BamHI GGATCC 1 cut(s) 268
BanI GGYRCC 2 cut(s) 216, 532
BanII GRGCYC 2 cut(s) 466, 773
BarI GAAGNNNNNNTAC 2 cut(s) 63, 95
BauI CACGAG 2 cut(s) 510, 903
BbsI GAAGAC 2 cut(s) 714, 1044
Bbv12I GWGCWC 3 cut(s) 423, 673, 773
BbvI GCAGC 4 cut(s) 117, 430, 433, 1072
BccI CCATC 6 cut(s) 148, 631, 721, 823, 1003, 1070
BcgI CGANNNNNNTGC 2 cut(s) 722, 756
BciT130I CCWGG 2 cut(s) 582, 1155
BcoDI GTCTC 3 cut(s) 317, 846, 1016
BfaI CTAG 4 cut(s) 330, 549, 759, 777
BfmI CTRYAG 3 cut(s) 103, 612, 1086
BfoI RGCGCY 1 cut(s) 1018
BfuAI ACCTGC 2 cut(s) 157, 1163
BisI GCNGC 6 cut(s) 106, 441, 444, 447, 1086, 1170
BlsI GCNGC 6 cut(s) 107, 442, 445, 448, 1087, 1171
Bme1390I CCNGG 2 cut(s) 582, 1155
Bme18I GGWCC 2 cut(s) 566, 812
BmeRI GACNNNNNGTC 1 cut(s) 1048
BmgT120I GGNCC 4 cut(s) 462, 463, 566, 812
BmiI GGNNCC 6 cut(s) 218, 270, 464, 497, 534, 1177
BmrFI CCNGG 2 cut(s) 582, 1155
BmsI GCATC 2 cut(s) 213, 563
BpiI GAAGAC 2 cut(s) 714, 1044
BpmI CTGGAG 2 cut(s) 311, 1077
BpuEI CTTGAG 2 cut(s) 230, 1040
BsaJI CCNNGG 4 cut(s) 361, 472, 580, 1120
BsaXI ACNNNNNCTCC 2 cut(s) 908, 938
Bsc4I CCNNNNNNNGG 4 cut(s) 246, 362, 585, 586
Bse1I ACTGG 2 cut(s) 294, 1048
BseBI CCWGG 2 cut(s) 582, 1155
BseDI CCNNGG 4 cut(s) 361, 472, 580, 1120
BseGI GGATG 5 cut(s) 204, 352, 517, 544, 655
BseLI CCNNNNNNNGG 4 cut(s) 246, 362, 585, 586
BseMII CTCAG 1 cut(s) 967
BseNI ACTGG 2 cut(s) 294, 1048
BseRI GAGGAG 2 cut(s) 549, 910
BseSI GKGCMC 2 cut(s) 466, 673
BseXI GCAGC 4 cut(s) 117, 430, 433, 1072
BsgI GTGCAG 1 cut(s) 1131
Bsh1236I CGCG 1 cut(s) 729
BshFI GGCC 4 cut(s) 101, 440, 464, 1153
BshNI GGYRCC 2 cut(s) 216, 532
BsiHKAI GWGCWC 3 cut(s) 423, 673, 773
BslFI GGGAC 2 cut(s) 222, 602
BslI CCNNNNNNNGG 4 cut(s) 246, 362, 585, 586
BsmAI GTCTC 3 cut(s) 317, 846, 1016
BsmFI GGGAC 2 cut(s) 222, 602
BsmI GAATGC 2 cut(s) 985, 1075
BsnI GGCC 4 cut(s) 101, 440, 464, 1153
Bsp120I GGGCCC 1 cut(s) 462
Bsp1286I GDGCHC 4 cut(s) 423, 466, 673, 773
Bsp143I GATC 5 cut(s) 136, 268, 500, 796, 1116
Bsp19I CCATGG 1 cut(s) 472
BspACI CCGC 2 cut(s) 441, 1170
BspANI GGCC 4 cut(s) 101, 440, 464, 1153
BspCNI CTCAG 1 cut(s) 966
BspFNI CGCG 1 cut(s) 729
BspLI GGNNCC 6 cut(s) 218, 270, 464, 497, 534, 1177
BspMAI CTGCAG 2 cut(s) 107, 1090
BspMI ACCTGC 2 cut(s) 157, 1163
BspPI GGATC 5 cut(s) 131, 263, 276, 804, 1111
BspQI GCTCTTC 1 cut(s) 411
BspT107I GGYRCC 2 cut(s) 216, 532
BsrI ACTGG 2 cut(s) 294, 1048
BssECI CCNNGG 4 cut(s) 361, 472, 580, 1120
BssMI GATC 5 cut(s) 136, 268, 500, 796, 1116
BssSI CACGAG 2 cut(s) 510, 903
BssT1I CCWWGG 2 cut(s) 361, 472
Bst2BI CACGAG 2 cut(s) 510, 903
Bst2UI CCWGG 2 cut(s) 582, 1155
Bst4CI ACNGT 5 cut(s) 134, 593, 613, 997, 1109
Bst6I CTCTTC 2 cut(s) 411, 475
BstAPI GCANNNNNTGC 1 cut(s) 111
BstC8I GCNNGC 4 cut(s) 103, 182, 221, 731
BstDEI CTNAG 2 cut(s) 852, 953
BstDSI CCRYGG 2 cut(s) 472, 1120
BstF5I GGATG 5 cut(s) 204, 352, 517, 544, 655
BstFNI CGCG 1 cut(s) 729
BstH2I RGCGCY 1 cut(s) 1018
BstHHI GCGC 1 cut(s) 1017
BstKTI GATC 5 cut(s) 139, 271, 503, 799, 1119
BstMAI GTCTC 3 cut(s) 317, 846, 1016
BstMBI GATC 5 cut(s) 136, 268, 500, 796, 1116
BstMWI GCNNNNNNNGC 9 cut(s) 32, 102, 111, 225, 335, 446, 495, 777, 989
BstNI CCWGG 2 cut(s) 582, 1155
BstSCI CCNGG 2 cut(s) 580, 1153
BstSFI CTRYAG 3 cut(s) 103, 612, 1086
BstSLI GKGCMC 2 cut(s) 466, 673
BstUI CGCG 1 cut(s) 729
BstV1I GCAGC 4 cut(s) 117, 430, 433, 1072
BstV2I GAAGAC 2 cut(s) 714, 1044
BstX2I RGATCY 2 cut(s) 268, 1116
BstXI CCANNNNNNTGG 2 cut(s) 473, 1055
BstYI RGATCY 2 cut(s) 268, 1116
BsuRI GGCC 4 cut(s) 101, 440, 464, 1153
BtgI CCRYGG 2 cut(s) 472, 1120
BtsCI GGATG 5 cut(s) 204, 352, 517, 544, 655
BtsI GCAGTG 1 cut(s) 199
BtsIMutI CAGTG 4 cut(s) 139, 150, 199, 598
BveI ACCTGC 2 cut(s) 157, 1163
Cac8I GCNNGC 4 cut(s) 103, 182, 221, 731
CfoI GCGC 1 cut(s) 1017
Cfr13I GGNCC 4 cut(s) 462, 463, 566, 812
Csp6I GTAC 6 cut(s) 396, 533, 877, 900, 1038, 1158
CviAII CATG 6 cut(s) 185, 241, 473, 575, 782, 865
CviQI GTAC 6 cut(s) 396, 533, 877, 900, 1038, 1158
DdeI CTNAG 2 cut(s) 852, 953
DpnI GATC 5 cut(s) 138, 270, 502, 798, 1118
DpnII GATC 5 cut(s) 136, 268, 500, 796, 1116
DriI GACNNNNNGTC 1 cut(s) 1048
EaeI YGGCCR 1 cut(s) 438
Eam1104I CTCTTC 2 cut(s) 411, 475
Eam1105I GACNNNNNGTC 1 cut(s) 1048
EarI CTCTTC 2 cut(s) 411, 475
Ecl136II GAGCTC 1 cut(s) 771
Eco130I CCWWGG 2 cut(s) 361, 472
Eco147I AGGCCT 2 cut(s) 101, 1153
Eco24I GRGCYC 2 cut(s) 466, 773
Eco32I GATATC 1 cut(s) 51
Eco47I GGWCC 2 cut(s) 566, 812
Eco53kI GAGCTC 1 cut(s) 771
Eco57I CTGAAG 2 cut(s) 624, 981
EcoICRI GAGCTC 1 cut(s) 771
EcoO109I RGGNCCY 1 cut(s) 462
EcoRII CCWGG 2 cut(s) 580, 1153
EcoRV GATATC 1 cut(s) 51
EcoT14I CCWWGG 2 cut(s) 361, 472
EcoT38I GRGCYC 2 cut(s) 466, 773
ErhI CCWWGG 2 cut(s) 361, 472
FaeI CATG 6 cut(s) 188, 244, 476, 578, 785, 868
FaqI GGGAC 2 cut(s) 222, 602
FatI CATG 6 cut(s) 184, 240, 472, 574, 781, 864
FauNDI CATATG 2 cut(s) 45, 110
Fnu4HI GCNGC 6 cut(s) 106, 441, 444, 447, 1086, 1170
FokI GGATG 5 cut(s) 191, 339, 504, 531, 662
FriOI GRGCYC 2 cut(s) 466, 773
Fsp4HI GCNGC 6 cut(s) 106, 441, 444, 447, 1086, 1170
FspBI CTAG 4 cut(s) 330, 549, 759, 777
GlaI GCGC 1 cut(s) 1016
GluI GCNGC 6 cut(s) 106, 441, 444, 447, 1086, 1170
GsuI CTGGAG 2 cut(s) 311, 1077
HaeII RGCGCY 1 cut(s) 1018
HaeIII GGCC 4 cut(s) 101, 440, 464, 1153
HhaI GCGC 1 cut(s) 1017
Hin1II CATG 6 cut(s) 188, 244, 476, 578, 785, 868
Hin6I GCGC 1 cut(s) 1015
HinP1I GCGC 1 cut(s) 1015
HindIII AAGCTT 1 cut(s) 854
HinfI GANTC 6 cut(s) 7, 148, 653, 839, 884, 1063
HphI GGTGA 3 cut(s) 16, 185, 988
Hpy166II GTNNAC 3 cut(s) 596, 671, 902
Hpy188I TCNGA 8 cut(s) 643, 690, 820, 838, 846, 949, 961, 1068
Hpy188III TCNNGA 5 cut(s) 281, 660, 800, 1002, 1056
Hpy8I GTNNAC 3 cut(s) 596, 671, 902
HpyAV CCTTC 7 cut(s) 65, 259, 453, 546, 690, 907, 948
HpyCH4III ACNGT 5 cut(s) 134, 593, 613, 997, 1109
HpyF10VI GCNNNNNNNGC 9 cut(s) 32, 102, 111, 225, 335, 446, 495, 777, 989
HpyF3I CTNAG 2 cut(s) 852, 953
Hsp92II CATG 6 cut(s) 188, 244, 476, 578, 785, 868
HspAI GCGC 1 cut(s) 1015
KpnI GGTACC 1 cut(s) 536
Kzo9I GATC 5 cut(s) 136, 268, 500, 796, 1116
LguI GCTCTTC 1 cut(s) 411
LmnI GCTCC 3 cut(s) 495, 768, 1012
Lsp1109I GCAGC 4 cut(s) 117, 430, 433, 1072
LweI GCATC 2 cut(s) 213, 563
MaeI CTAG 4 cut(s) 330, 549, 759, 777
MaeIII GTNAC 2 cut(s) 169, 1139
MalI GATC 5 cut(s) 138, 270, 502, 798, 1118
MboI GATC 5 cut(s) 136, 268, 500, 796, 1116
MboII GAAGA 6 cut(s) 324, 428, 492, 696, 714, 1044
MflI RGATCY 2 cut(s) 268, 1116
MhlI GDGCHC 4 cut(s) 423, 466, 673, 773
MluCI AATT 6 cut(s) 284, 374, 699, 751, 859, 987
MluI ACGCGT 1 cut(s) 727
MlyI GAGTC 1 cut(s) 848
MmeI TCCRAC 1 cut(s) 927
MroXI GAANNNNTTC 1 cut(s) 703
MseI TTAA 1 cut(s) 858
MslI CAYNNNNRTG 3 cut(s) 471, 549, 869
MspA1I CMGCKG 3 cut(s) 56, 443, 602
MspR9I CCNGG 2 cut(s) 582, 1155
Mva1269I GAATGC 2 cut(s) 985, 1075
MvaI CCWGG 2 cut(s) 582, 1155
MvnI CGCG 1 cut(s) 729
MwoI GCNNNNNNNGC 9 cut(s) 32, 102, 111, 225, 335, 446, 495, 777, 989
NcoI CCATGG 1 cut(s) 472
NdeI CATATG 2 cut(s) 45, 110
NdeII GATC 5 cut(s) 136, 268, 500, 796, 1116
NlaIII CATG 6 cut(s) 188, 244, 476, 578, 785, 868
NlaIV GGNNCC 6 cut(s) 218, 270, 464, 497, 534, 1177
NmuCI GTSAC 1 cut(s) 1139
PceI AGGCCT 2 cut(s) 101, 1153
PciSI GCTCTTC 1 cut(s) 411
PctI GAATGC 2 cut(s) 985, 1075
PdmI GAANNNNTTC 1 cut(s) 703
PfeI GAWTC 5 cut(s) 7, 148, 653, 884, 1063
PflMI CCANNNNNTGG 1 cut(s) 246
PkrI GCNGC 6 cut(s) 107, 442, 445, 448, 1087, 1171
PleI GAGTC 1 cut(s) 847
PpsI GAGTC 1 cut(s) 847
Psp124BI GAGCTC 1 cut(s) 773
Psp6I CCWGG 2 cut(s) 580, 1153
PspGI CCWGG 2 cut(s) 580, 1153
PspN4I GGNNCC 6 cut(s) 218, 270, 464, 497, 534, 1177
PspOMI GGGCCC 1 cut(s) 462
PspPI GGNCC 4 cut(s) 462, 463, 566, 812
PstI CTGCAG 2 cut(s) 107, 1090
PsuI RGATCY 2 cut(s) 268, 1116
PvuII CAGCTG 2 cut(s) 56, 602
RsaI GTAC 6 cut(s) 397, 534, 878, 901, 1039, 1159
RsaNI GTAC 6 cut(s) 396, 533, 877, 900, 1038, 1158
RseI CAYNNNNRTG 3 cut(s) 471, 549, 869
SacI GAGCTC 1 cut(s) 773
SapI GCTCTTC 1 cut(s) 411
SaqAI TTAA 1 cut(s) 858
SatI GCNGC 6 cut(s) 106, 441, 444, 447, 1086, 1170
Sau3AI GATC 5 cut(s) 136, 268, 500, 796, 1116
Sau96I GGNCC 4 cut(s) 462, 463, 566, 812
SchI GAGTC 1 cut(s) 848
ScrFI CCNGG 2 cut(s) 582, 1155
SduI GDGCHC 4 cut(s) 423, 466, 673, 773
SfaNI GCATC 2 cut(s) 213, 563
SfcI CTRYAG 3 cut(s) 103, 612, 1086
SinI GGWCC 2 cut(s) 566, 812
SmiMI CAYNNNNRTG 3 cut(s) 471, 549, 869
SmlI CTYRAG 2 cut(s) 209, 1019
SmoI CTYRAG 2 cut(s) 209, 1019
Sse9I AATT 6 cut(s) 284, 374, 699, 751, 859, 987
SseBI AGGCCT 2 cut(s) 101, 1153
SsiI CCGC 2 cut(s) 441, 1170
SspMI CTAG 4 cut(s) 330, 549, 759, 777
SstI GAGCTC 1 cut(s) 773
StuI AGGCCT 2 cut(s) 101, 1153
StyD4I CCNGG 2 cut(s) 580, 1153
StyI CCWWGG 2 cut(s) 361, 472
TaaI ACNGT 5 cut(s) 134, 593, 613, 997, 1109
TaqI TCGA 2 cut(s) 893, 1003
TasI AATT 6 cut(s) 284, 374, 699, 751, 859, 987
TatI WGTACW 2 cut(s) 899, 1037
TauI GCSGC 2 cut(s) 443, 1172
TfiI GAWTC 5 cut(s) 7, 148, 653, 884, 1063
Tru1I TTAA 1 cut(s) 858
Tru9I TTAA 1 cut(s) 858
TscAI CASTG 4 cut(s) 139, 150, 206, 598
TseFI GTSAC 1 cut(s) 1139
TseI GCWGC 4 cut(s) 105, 443, 446, 1085
Tsp45I GTSAC 1 cut(s) 1139
TspDTI ATGAA 3 cut(s) 338, 563, 666
TspGWI ACGGA 2 cut(s) 711, 1109
TspRI CASTG 4 cut(s) 139, 150, 206, 598
Van91I CCANNNNNTGG 1 cut(s) 246
VneI GTGCAC 1 cut(s) 669
VpaK11BI GGWCC 2 cut(s) 566, 812
XapI RAATTY 2 cut(s) 699, 751
XmnI GAANNNNTTC 1 cut(s) 703
XspI CTAG 4 cut(s) 330, 549, 759, 777
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.