pycom14g04700

plastid-lipid-associated protein 13

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0004957
Physical Location & Seq
Forward (+)
4406065 .. 4411156
5092 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 930 bp
ATGGCGTCGGTGCAGAGCCAGCTCTCTGCTTTTTCTTCCATAGCCTCGTGCTATTTGACTTCGTCTTCTTCGCCGTCGTCGGCCTTCTCTTCCACCGCCACCACTGCACTGGTTTCCGTCGGCAGGTCGCCGCAGCGTCGTCTGAAATTCTACGGAGACGGGAGAATTCGCCTCCAGCGGTCCGTATGCCGAGCGATGGTTCAGCAGGCCGTTCCCGGAGCTCCTGCTGCCTATGCTAAGGAAATGGAGAGGCTTTCCGCTAAAGAATCGCTTCTTCTCGCCTTTAAGGATGCTGGGGGTTTTGAGGCTTTAGTCACTGGGAAGACAACAGACATGGAGCGAATTGATGTGAATGAAAGGATAACTGCTTTGGAGCGGGTCAATCCAACACCACGTCCTACAACGTCGCCTTTTTTGGAAGGTCGATGGAACTTCGAGTGGTTTGGATCTGGAAGCCCAGGTCTTTTTGCTGCCAGATTTTTGTTTGAGAGGTTTCCTTCAACTTTGGCTAGTTTGACAAAAATGCAGGTGGTCATCAAGGATGGGAATGCAATGATTACGGCAAAATTGAAAGTGTTCAACTCGATAGAAAGCAAATTTACTTTGTCAACCAAGTTAACTGTGGAGGGACCAGTTCGAATGAAAGAGGAATATGTTGAGGGGATTCTTGAGACACCAAAAGTTATTGAAGAGACAATACCAGACCAGCTAAAAGGTGCACTTGGTCAGGCTGTAAACACAGTGCAACAACTTCCTCTGGCTATTAGGGATGCCTTTTCCAGTGGGCTGAAAGTTCCTTTAACTGGATCTTTCGAGAGACTCTTCATGATCTCCTATCTTGATACCGAGATACTTATAATACGAGATGCTGCTGGAGTTCCTGAAGTGCTTACCAGGCTGGAAGAAGGCATCATAGAGTATGAAAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAP_fibrillin

Protein Analysis

310

Amino Acids

33.84

Weight (kDa)

7.68

Isoelectric Point (pI)

46.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP_fibrillin PF04755 110 - 293 1.7e-12 PAP_fibrillin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 857
AarI CACCTGC 1 cut(s) 517
Acc36I ACCTGC 2 cut(s) 114, 517
AccBSI CCGCTC 1 cut(s) 376
AciI CCGC 5 cut(s) 96, 131, 178, 258, 376
AclWI GGATC 2 cut(s) 454, 814
AcsI RAATTY 3 cut(s) 146, 165, 596
AcuI CTGAAG 1 cut(s) 903
AcyI GRCGYC 1 cut(s) 5
AfiI CCNNNNNNNGG 3 cut(s) 123, 196, 803
AgsI TTSAA 4 cut(s) 501, 571, 580, 689
AjiI CACGTC 1 cut(s) 395
AjnI CCWGG 2 cut(s) 457, 893
AluBI AGCT 4 cut(s) 22, 221, 709, 927
AluI AGCT 4 cut(s) 22, 221, 709, 927
Alw21I GWGCWC 2 cut(s) 223, 721
Alw26I GTCTC 4 cut(s) 150, 665, 686, 811
Alw44I GTGCAC 1 cut(s) 717
AlwI GGATC 2 cut(s) 454, 814
AoxI GGCC 2 cut(s) 81, 207
ApaLI GTGCAC 1 cut(s) 717
ApeKI GCWGC 4 cut(s) 133, 227, 470, 869
ApoI RAATTY 3 cut(s) 146, 165, 596
Asp700I GAANNNNTTC 2 cut(s) 270, 575
AspS9I GGNCC 2 cut(s) 180, 629
AsuC2I CCSGG 1 cut(s) 216
AsuII TTCGAA 1 cut(s) 637
AvaII GGWCC 2 cut(s) 180, 629
BaeGI GKGCMC 1 cut(s) 721
BanII GRGCYC 1 cut(s) 223
BarI GAAGNNNNNNTAC 2 cut(s) 681, 713
BauI CACGAG 1 cut(s) 46
BbsI GAAGAC 2 cut(s) 57, 329
Bbv12I GWGCWC 2 cut(s) 223, 721
BbvI GCAGC 4 cut(s) 145, 214, 457, 856
BccI CCATC 3 cut(s) 190, 420, 536
BceAI ACGGC 3 cut(s) 58, 194, 576
BciT130I CCWGG 2 cut(s) 459, 895
BcnI CCSGG 1 cut(s) 216
BcoDI GTCTC 4 cut(s) 150, 665, 686, 811
BfaI CTAG 1 cut(s) 510
BfuAI ACCTGC 2 cut(s) 114, 517
BisI GCNGC 5 cut(s) 131, 134, 228, 471, 870
BlsI GCNGC 5 cut(s) 132, 135, 229, 472, 871
Bme1390I CCNGG 3 cut(s) 216, 459, 895
Bme18I GGWCC 2 cut(s) 180, 629
BmgBI CACGTC 1 cut(s) 395
BmgT120I GGNCC 2 cut(s) 180, 629
BmiI GGNNCC 1 cut(s) 630
BmrFI CCNGG 3 cut(s) 216, 459, 895
BmrI ACTGGG 1 cut(s) 327
BmsI GCATC 4 cut(s) 280, 760, 856, 918
BmuI ACTGGG 1 cut(s) 327
BpiI GAAGAC 2 cut(s) 57, 329
BpmI CTGGAG 2 cut(s) 158, 894
Bpu10I CCTNAGC 1 cut(s) 237
Bpu14I TTCGAA 1 cut(s) 637
BpuEI CTTGAG 1 cut(s) 689
BpuMI CCSGG 1 cut(s) 216
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 457
Bsc4I CCNNNNNNNGG 3 cut(s) 123, 196, 803
Bse1I ACTGG 5 cut(s) 114, 322, 632, 780, 808
Bse3DI GCAATG 1 cut(s) 558
BseBI CCWGG 2 cut(s) 459, 895
BseDI CCNNGG 1 cut(s) 457
BseGI GGATG 3 cut(s) 295, 547, 775
BseLI CCNNNNNNNGG 3 cut(s) 123, 196, 803
BseMI GCAATG 1 cut(s) 558
BseNI ACTGG 5 cut(s) 114, 322, 632, 780, 808
BseSI GKGCMC 1 cut(s) 721
BseXI GCAGC 4 cut(s) 145, 214, 457, 856
BseYI CCCAGC 1 cut(s) 293
BsgI GTGCAG 2 cut(s) 32, 90
BshFI GGCC 2 cut(s) 83, 209
BsiHKAI GWGCWC 2 cut(s) 223, 721
BsiSI CCGG 1 cut(s) 216
BslFI GGGAC 1 cut(s) 642
BslI CCNNNNNNNGG 3 cut(s) 123, 196, 803
BsmAI GTCTC 4 cut(s) 150, 665, 686, 811
BsmBI CGTCTC 1 cut(s) 150
BsmFI GGGAC 1 cut(s) 642
BsmI GAATGC 1 cut(s) 553
BsnI GGCC 2 cut(s) 83, 209
Bsp119I TTCGAA 1 cut(s) 637
Bsp1286I GDGCHC 2 cut(s) 223, 721
Bsp143I GATC 3 cut(s) 446, 806, 828
BspACI CCGC 5 cut(s) 96, 131, 178, 258, 376
BspANI GGCC 2 cut(s) 83, 209
BspHI TCATGA 1 cut(s) 825
BspLI GGNNCC 1 cut(s) 630
BspMI ACCTGC 2 cut(s) 114, 517
BspPI GGATC 2 cut(s) 454, 814
BspT104I TTCGAA 1 cut(s) 637
BsrBI CCGCTC 1 cut(s) 376
BsrDI GCAATG 1 cut(s) 558
BsrI ACTGG 5 cut(s) 114, 322, 632, 780, 808
BssECI CCNNGG 1 cut(s) 457
BssMI GATC 3 cut(s) 446, 806, 828
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 46
Bst2BI CACGAG 1 cut(s) 46
Bst2UI CCWGG 2 cut(s) 459, 895
Bst4CI ACNGT 2 cut(s) 622, 742
Bst6I CTCTTC 3 cut(s) 94, 684, 827
BstACI GRCGYC 1 cut(s) 5
BstBI TTCGAA 1 cut(s) 637
BstC8I GCNNGC 2 cut(s) 20, 207
BstDEI CTNAG 1 cut(s) 237
BstF5I GGATG 3 cut(s) 295, 547, 775
BstKTI GATC 3 cut(s) 449, 809, 831
BstMAI GTCTC 4 cut(s) 150, 665, 686, 811
BstMBI GATC 3 cut(s) 446, 806, 828
BstMWI GCNNNNNNNGC 5 cut(s) 19, 104, 227, 233, 895
BstNI CCWGG 2 cut(s) 459, 895
BstSCI CCNGG 3 cut(s) 214, 457, 893
BstSLI GKGCMC 1 cut(s) 721
BstV1I GCAGC 4 cut(s) 145, 214, 457, 856
BstV2I GAAGAC 2 cut(s) 57, 329
BstX2I RGATCY 2 cut(s) 446, 806
BstXI CCANNNNNNTGG 1 cut(s) 109
BstYI RGATCY 2 cut(s) 446, 806
BsuRI GGCC 2 cut(s) 83, 209
BtgZI GCGATG 1 cut(s) 209
BtrI CACGTC 1 cut(s) 395
BtsCI GGATG 3 cut(s) 295, 547, 775
BtsI GCAGTG 1 cut(s) 102
BtsIMutI CAGTG 5 cut(s) 102, 107, 315, 747, 787
BveI ACCTGC 2 cut(s) 114, 517
Cac8I GCNNGC 2 cut(s) 20, 207
CciI TCATGA 1 cut(s) 825
Cfr13I GGNCC 2 cut(s) 180, 629
CpoI CGGWCCG 1 cut(s) 180
CseI GACGC 1 cut(s) 125
CspI CGGWCCG 1 cut(s) 180
CviAII CATG 2 cut(s) 334, 826
DdeI CTNAG 1 cut(s) 237
DpnI GATC 3 cut(s) 448, 808, 830
DpnII GATC 3 cut(s) 446, 806, 828
Eam1104I CTCTTC 3 cut(s) 94, 684, 827
EarI CTCTTC 3 cut(s) 94, 684, 827
Ecl136II GAGCTC 1 cut(s) 221
Eco24I GRGCYC 1 cut(s) 223
Eco47I GGWCC 2 cut(s) 180, 629
Eco53kI GAGCTC 1 cut(s) 221
Eco57I CTGAAG 1 cut(s) 903
EcoICRI GAGCTC 1 cut(s) 221
EcoRI GAATTC 1 cut(s) 165
EcoRII CCWGG 2 cut(s) 457, 893
EcoT38I GRGCYC 1 cut(s) 223
Esp3I CGTCTC 1 cut(s) 150
FaeI CATG 2 cut(s) 337, 829
FaiI YATR 9 cut(s) 41, 187, 234, 335, 654, 827, 857, 914, 921
FalI AAGNNNNNCTT 4 cut(s) 255, 287, 705, 737
FaqI GGGAC 1 cut(s) 642
FatI CATG 2 cut(s) 333, 825
FauI CCCGC 1 cut(s) 369
Fnu4HI GCNGC 5 cut(s) 131, 134, 228, 471, 870
FokI GGATG 3 cut(s) 302, 554, 782
FriOI GRGCYC 1 cut(s) 223
Fsp4HI GCNGC 5 cut(s) 131, 134, 228, 471, 870
FspBI CTAG 1 cut(s) 510
GluI GCNGC 5 cut(s) 131, 134, 228, 471, 870
GsaI CCCAGC 1 cut(s) 297
GsuI CTGGAG 2 cut(s) 158, 894
HaeIII GGCC 2 cut(s) 83, 209
HapII CCGG 1 cut(s) 216
HgaI GACGC 1 cut(s) 125
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 337, 829
HincII GTYRAC 2 cut(s) 609, 618
HindII GTYRAC 2 cut(s) 609, 618
HinfI GANTC 3 cut(s) 266, 664, 819
HpaI GTTAAC 1 cut(s) 618
HpaII CCGG 1 cut(s) 216
Hpy166II GTNNAC 4 cut(s) 609, 618, 719, 736
Hpy188I TCNGA 1 cut(s) 144
Hpy188III TCNNGA 6 cut(s) 450, 668, 814, 826, 839, 881
Hpy8I GTNNAC 4 cut(s) 609, 618, 719, 736
Hpy99I CGWCG 6 cut(s) 10, 79, 82, 122, 141, 409
HpyAV CCTTC 4 cut(s) 94, 413, 507, 899
HpyCH4III ACNGT 2 cut(s) 622, 742
HpyCH4IV ACGT 2 cut(s) 394, 404
HpyCH4V TGCA 6 cut(s) 13, 107, 526, 551, 719, 745
HpyF10VI GCNNNNNNNGC 5 cut(s) 19, 104, 227, 233, 895
HpyF3I CTNAG 1 cut(s) 237
HpySE526I ACGT 2 cut(s) 394, 404
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 337, 829
KspAI GTTAAC 1 cut(s) 618
Kzo9I GATC 3 cut(s) 446, 806, 828
LmnI GCTCC 4 cut(s) 218, 226, 337, 373
Lsp1109I GCAGC 4 cut(s) 145, 214, 457, 856
LweI GCATC 4 cut(s) 280, 760, 856, 918
MaeI CTAG 1 cut(s) 510
MaeII ACGT 2 cut(s) 394, 404
MaeIII GTNAC 1 cut(s) 313
MalI GATC 3 cut(s) 448, 808, 830
MbiI CCGCTC 1 cut(s) 376
MboI GATC 3 cut(s) 446, 806, 828
MboII GAAGA 9 cut(s) 27, 57, 60, 81, 266, 334, 701, 814, 914
MflI RGATCY 2 cut(s) 446, 806
MhlI GDGCHC 2 cut(s) 223, 721
MluCI AATT 5 cut(s) 146, 165, 342, 566, 596
MlyI GAGTC 1 cut(s) 813
MmeI TCCRAC 1 cut(s) 410
MnlI CCTC 9 cut(s) 55, 182, 243, 298, 483, 619, 640, 652, 765
MroXI GAANNNNTTC 2 cut(s) 270, 575
MseI TTAA 3 cut(s) 285, 617, 800
MspA1I CMGCKG 1 cut(s) 178
MspI CCGG 1 cut(s) 216
MspR9I CCNGG 3 cut(s) 216, 459, 895
Mva1269I GAATGC 1 cut(s) 553
MvaI CCWGG 2 cut(s) 459, 895
MwoI GCNNNNNNNGC 5 cut(s) 19, 104, 227, 233, 895
NciI CCSGG 1 cut(s) 216
NdeII GATC 3 cut(s) 446, 806, 828
NlaIII CATG 2 cut(s) 337, 829
NlaIV GGNNCC 1 cut(s) 630
NmeAIII GCCGAG 1 cut(s) 215
NmuCI GTSAC 1 cut(s) 313
NspV TTCGAA 1 cut(s) 637
PagI TCATGA 1 cut(s) 825
PaqCI CACCTGC 1 cut(s) 517
PctI GAATGC 1 cut(s) 553
PdmI GAANNNNTTC 2 cut(s) 270, 575
PfeI GAWTC 2 cut(s) 266, 664
PflFI GACNNNGTC 1 cut(s) 61
PfoI TCCNGGA 1 cut(s) 214
PkrI GCNGC 5 cut(s) 132, 135, 229, 472, 871
PleI GAGTC 1 cut(s) 813
PpsI GAGTC 1 cut(s) 813
PsiI TTATAA 1 cut(s) 857
Psp124BI GAGCTC 1 cut(s) 223
Psp6I CCWGG 2 cut(s) 457, 893
PspFI CCCAGC 1 cut(s) 293
PspGI CCWGG 2 cut(s) 457, 893
PspN4I GGNNCC 1 cut(s) 630
PspPI GGNCC 2 cut(s) 180, 629
PsuI RGATCY 2 cut(s) 446, 806
PsyI GACNNNGTC 1 cut(s) 61
Rsr2I CGGWCCG 1 cut(s) 180
RsrII CGGWCCG 1 cut(s) 180
SacI GAGCTC 1 cut(s) 223
SaqAI TTAA 3 cut(s) 285, 617, 800
SatI GCNGC 5 cut(s) 131, 134, 228, 471, 870
Sau3AI GATC 3 cut(s) 446, 806, 828
Sau96I GGNCC 2 cut(s) 180, 629
SchI GAGTC 1 cut(s) 813
ScrFI CCNGG 3 cut(s) 216, 459, 895
SduI GDGCHC 2 cut(s) 223, 721
SfaNI GCATC 4 cut(s) 280, 760, 856, 918
SfuI TTCGAA 1 cut(s) 637
SinI GGWCC 2 cut(s) 180, 629
SmlI CTYRAG 1 cut(s) 668
SmoI CTYRAG 1 cut(s) 668
Sse9I AATT 5 cut(s) 146, 165, 342, 566, 596
SsiI CCGC 5 cut(s) 96, 131, 178, 258, 376
SspMI CTAG 1 cut(s) 510
SstI GAGCTC 1 cut(s) 223
StyD4I CCNGG 3 cut(s) 214, 457, 893
TaaI ACNGT 2 cut(s) 622, 742
TaiI ACGT 2 cut(s) 397, 407
TaqI TCGA 5 cut(s) 424, 435, 584, 637, 813
TasI AATT 5 cut(s) 146, 165, 342, 566, 596
TauI GCSGC 1 cut(s) 133
TfiI GAWTC 2 cut(s) 266, 664
Tru1I TTAA 3 cut(s) 285, 617, 800
Tru9I TTAA 3 cut(s) 285, 617, 800
TscAI CASTG 5 cut(s) 109, 114, 322, 747, 787
TseFI GTSAC 1 cut(s) 313
TseI GCWGC 4 cut(s) 133, 227, 470, 869
Tsp45I GTSAC 1 cut(s) 313
TspDTI ATGAA 3 cut(s) 369, 656, 814
TspGWI ACGGA 3 cut(s) 106, 168, 172
TspRI CASTG 5 cut(s) 109, 114, 322, 747, 787
Tth111I GACNNNGTC 1 cut(s) 61
VneI GTGCAC 1 cut(s) 717
VpaK11BI GGWCC 2 cut(s) 180, 629
XapI RAATTY 3 cut(s) 146, 165, 596
XcmI CCANNNNNNNNNTGG 2 cut(s) 106, 619
XmnI GAANNNNTTC 2 cut(s) 270, 575
XspI CTAG 1 cut(s) 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.