pycom14g08780

histone-lysine N-methyltransferase, H3 lysine-9 specific

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0010169
Physical Location & Seq
Forward (+)
10022941 .. 10023306
366 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 366 bp
ATGGGGAGTGATTATGAAGACGATTACATTTTCGATGCTACTCGTACCTGTCAGCCACTCGGGGTTCTGCCTGGTGATTCTACTGAGACTTCAAAGGCCCCATTTCCTCTAATTATAAGTGCAAATACTGATGGAAATGTTGCTCGTTTTATGAATCACAGCTGTTCTCCAAATGTACTTTGGCAGCCAGTCTTAAGGGAAAACAAAAATGAGTCTGACCTCCATATTGCGTTTTATGCGGTTGGACACATACCTCCTATGACAGAGTTGACATATGATTATGGGATGGTCCCTCAAGAGAAAGCATACCATAGGAAGAAAGTGTGCCTTTGTGGGTCAATAAAATGCAGAAGCTTCTTTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00260 ko00310 ko01100 ko04146 ko04211 map00260 map00310 map01100 map04146 map04211
Pfam Domains
Protein Families
AT_hook Pre-SET SAD_SRA SET

Protein Analysis

122

Amino Acids

13.67

Weight (kDa)

5.72

Isoelectric Point (pI)

64.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SET PF00856 39 - 95 1.9e-13 SET domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 116
AciI CCGC 1 cut(s) 239
AfaI GTAC 2 cut(s) 46, 177
AflII CTTAAG 1 cut(s) 193
AgsI TTSAA 1 cut(s) 93
AjnI CCWGG 1 cut(s) 70
AluBI AGCT 2 cut(s) 162, 354
AluI AGCT 2 cut(s) 162, 354
Alw26I GTCTC 1 cut(s) 80
Ama87I CYCGRG 1 cut(s) 59
AoxI GGCC 1 cut(s) 96
ApeKI GCWGC 1 cut(s) 184
AspS9I GGNCC 2 cut(s) 97, 289
AsuHPI GGTGA 1 cut(s) 86
AvaI CYCGRG 1 cut(s) 59
AvaII GGWCC 1 cut(s) 289
BbsI GAAGAC 1 cut(s) 24
BbvI GCAGC 1 cut(s) 196
BccI CCATC 2 cut(s) 125, 280
BciT130I CCWGG 1 cut(s) 72
BcoDI GTCTC 1 cut(s) 80
BfrI CTTAAG 1 cut(s) 193
BisI GCNGC 1 cut(s) 185
BlsI GCNGC 1 cut(s) 186
Bme1390I CCNGG 1 cut(s) 72
Bme18I GGWCC 1 cut(s) 289
BmeT110I CYCGRG 1 cut(s) 59
BmgT120I GGNCC 2 cut(s) 97, 289
BmiI GGNNCC 2 cut(s) 99, 291
BmrFI CCNGG 1 cut(s) 72
BmsI GCATC 1 cut(s) 25
BpiI GAAGAC 1 cut(s) 24
BpuEI CTTGAG 1 cut(s) 279
Bse1I ACTGG 1 cut(s) 188
BseBI CCWGG 1 cut(s) 72
BseGI GGATG 1 cut(s) 291
BseMII CTCAG 1 cut(s) 75
BseNI ACTGG 1 cut(s) 188
BseXI GCAGC 1 cut(s) 196
BshFI GGCC 1 cut(s) 98
BsiHKCI CYCGRG 1 cut(s) 59
BslFI GGGAC 1 cut(s) 275
BsmAI GTCTC 1 cut(s) 80
BsmFI GGGAC 1 cut(s) 275
BsnI GGCC 1 cut(s) 98
BsoBI CYCGRG 1 cut(s) 59
BspACI CCGC 1 cut(s) 239
BspANI GGCC 1 cut(s) 98
BspCNI CTCAG 1 cut(s) 76
BspLI GGNNCC 2 cut(s) 99, 291
BspTI CTTAAG 1 cut(s) 193
BsrI ACTGG 1 cut(s) 188
Bst2UI CCWGG 1 cut(s) 72
BstAFI CTTAAG 1 cut(s) 193
BstDEI CTNAG 1 cut(s) 84
BstF5I GGATG 1 cut(s) 291
BstMAI GTCTC 1 cut(s) 80
BstMWI GCNNNNNNNGC 1 cut(s) 236
BstNI CCWGG 1 cut(s) 72
BstSCI CCNGG 1 cut(s) 70
BstV1I GCAGC 1 cut(s) 196
BstV2I GAAGAC 1 cut(s) 24
BsuRI GGCC 1 cut(s) 98
BtsCI GGATG 1 cut(s) 291
Cfr13I GGNCC 2 cut(s) 97, 289
Csp6I GTAC 2 cut(s) 45, 176
CviJI RGCY 5 cut(s) 55, 98, 162, 187, 354
CviKI_1 RGCY 5 cut(s) 55, 98, 162, 187, 354
CviQI GTAC 2 cut(s) 45, 176
DdeI CTNAG 1 cut(s) 84
Eco47I GGWCC 1 cut(s) 289
Eco88I CYCGRG 1 cut(s) 59
EcoO109I RGGNCCY 1 cut(s) 97
EcoRII CCWGG 1 cut(s) 70
FalI AAGNNNNNCTT 2 cut(s) 312, 344
FaqI GGGAC 1 cut(s) 275
FauNDI CATATG 1 cut(s) 274
Fnu4HI GCNGC 1 cut(s) 185
FokI GGATG 1 cut(s) 298
Fsp4HI GCNGC 1 cut(s) 185
GluI GCNGC 1 cut(s) 185
HaeIII GGCC 1 cut(s) 98
HincII GTYRAC 1 cut(s) 270
HindII GTYRAC 1 cut(s) 270
HindIII AAGCTT 1 cut(s) 352
HinfI GANTC 3 cut(s) 77, 154, 212
HphI GGTGA 1 cut(s) 86
Hpy166II GTNNAC 1 cut(s) 270
Hpy188I TCNGA 1 cut(s) 217
Hpy188III TCNNGA 1 cut(s) 296
Hpy8I GTNNAC 1 cut(s) 270
HpyCH4V TGCA 2 cut(s) 122, 348
HpyF10VI GCNNNNNNNGC 1 cut(s) 236
HpyF3I CTNAG 1 cut(s) 84
LpnPI CCDG 4 cut(s) 57, 61, 84, 201
Lsp1109I GCAGC 1 cut(s) 196
LweI GCATC 1 cut(s) 25
MboII GAAGA 2 cut(s) 29, 328
MluCI AATT 1 cut(s) 111
MlyI GAGTC 1 cut(s) 221
MmeI TCCRAC 1 cut(s) 223
MnlI CCTC 4 cut(s) 117, 230, 264, 303
MseI TTAA 1 cut(s) 194
MspA1I CMGCKG 1 cut(s) 162
MspCI CTTAAG 1 cut(s) 193
MspR9I CCNGG 1 cut(s) 72
MvaI CCWGG 1 cut(s) 72
MwoI GCNNNNNNNGC 1 cut(s) 236
NdeI CATATG 1 cut(s) 274
NlaIV GGNNCC 2 cut(s) 99, 291
PfeI GAWTC 2 cut(s) 77, 154
PkrI GCNGC 1 cut(s) 186
PleI GAGTC 1 cut(s) 220
PpsI GAGTC 1 cut(s) 220
PsiI TTATAA 1 cut(s) 116
Psp6I CCWGG 1 cut(s) 70
PspGI CCWGG 1 cut(s) 70
PspN4I GGNNCC 2 cut(s) 99, 291
PspPI GGNCC 2 cut(s) 97, 289
PvuII CAGCTG 1 cut(s) 162
RsaI GTAC 2 cut(s) 46, 177
RsaNI GTAC 2 cut(s) 45, 176
SaqAI TTAA 1 cut(s) 194
SatI GCNGC 1 cut(s) 185
Sau96I GGNCC 2 cut(s) 97, 289
SchI GAGTC 1 cut(s) 221
ScrFI CCNGG 1 cut(s) 72
SetI ASST 5 cut(s) 50, 164, 222, 256, 356
SfaNI GCATC 1 cut(s) 25
SgeI CNNG 9 cut(s) 54, 60, 71, 73, 83, 84, 156, 200, 308
SinI GGWCC 1 cut(s) 289
SmlI CTYRAG 2 cut(s) 193, 294
SmoI CTYRAG 2 cut(s) 193, 294
Sse9I AATT 1 cut(s) 111
SsiI CCGC 1 cut(s) 239
StyD4I CCNGG 1 cut(s) 70
TaqI TCGA 1 cut(s) 33
TasI AATT 1 cut(s) 111
TatI WGTACW 1 cut(s) 175
TfiI GAWTC 2 cut(s) 77, 154
Tru1I TTAA 1 cut(s) 194
Tru9I TTAA 1 cut(s) 194
TseI GCWGC 1 cut(s) 184
TspDTI ATGAA 2 cut(s) 30, 167
Vha464I CTTAAG 1 cut(s) 193
VpaK11BI GGWCC 1 cut(s) 289
XcmI CCANNNNNNNNNTGG 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.