Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0005870

Physical Location & Seq

Genomic Coordinates Reverse (-)

12966183 .. 12966903

Gene Structure 721 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGCCATTATACACATCCCTCCTCCACTCTCCATGTCCCCTCTCTCACTCTTCCCCTCACTTCCTCTCTCTCTTTCTCTCTCTAGAGAACACAGAGAAACTAAACAAAAACCCATTTCATATCTCCGAACTCCATAACCGAATCACAACCCAAAACCTCAAAGTTCGAAGCTTTTTAATGGGGTTCCCAGTTGGGTACACAGAGATTCTGCTTCCAAAGCTCTTCATCCAAACACTCTCTCTGCTGTGTCTAATCCGAAAACTCATCTCAGCCTTCTTCTCCCTGCTGGGTCTCCAATATTTCATCGAACAGGACAATGCCCGGTCCGACCCGCCGGCCCGATTCCCGGAGTTCTACTCCGTCTCCGCGGTTCTGATCCGGGAAATCCTGCCGCTGGCAAAATTCTCGGACCTGGTGGACCCGCCGGAGTCATGTGCCGTGTGCCTGTACGAGTTCGAGGGCGAGGACGAGATACGACGGCTCACGAATTGTCGTCACGTCTTCCACAAAGGGTGCGTGGACCGGTGGGTCGGGTACGACCAGAAGACATGCCCGCTGTGTCGTGCGCCGTTCATATCGGAGGATATGCAGGGCGATTTCAATGAGAGGCTTTGGGCCGCTACTGGGATCCCTGATTTTTACGGTGATTATTCTCACACTAATCTTGGCTTTGAATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0046686 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

227

Amino Acids

25.97

Weight (kDa)

5.74

Isoelectric Point (pI)

53.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	144 - 188	5.5e-13	Ring finger domain
zf-RING_11	PF17123	145 - 173	1.3e-08	RING-like zinc finger
zf-C3HC4	PF00097	145 - 187	4e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_5	PF14634	145 - 188	6.4e-07	zinc-RING finger domain
zf-C3HC4_2	PF13923	145 - 187	9.7e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	152 - 188	1.3e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61460
fragaria_vesca	FvH4_5g02880 FvH4_7g14900
malus_domestica	MD01G1067800.v1.1 MD06G1088300.v1.1 MD07G1133100.v1.1 MD14G1109400.v1.1
prunus_persica	Prupe.2G174100_v2.0.a1 Prupe.5G104300_v2.0.a1
pyrus_communis	pycom14g10350
rosa_chinensis	RchiOBHm_Chr1g0356851 RchiOBHm_Chr7g0197001
rosa_laevigata	RLG00000003966 RLG00000028076
rosa_multiflora	Rmu_sc0003248.1_g000003
rosa_roxburghii	Rroxscaffold_3G00258740 Rroxscaffold_4G00299260
rosa_rugosa	Rorug07G0037000
rosa_samantha	Rh1AG266300 Rh1BG233700 Rh1CG249800 Rh1DG261100 Rh7AG162000 Rh7BG163900 Rh7CG170100 Rh7DG163200
rosa_wichuraiana	Rw1G023530 Rw7G014140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	527
AccII	CGCG	1 cut(s)	368
AciI	CCGC	7 cut(s)	332, 366, 368, 392, 422, 554, 618
AclWI	GGATC	3 cut(s)	370, 622, 635
AcsI	RAATTY	1 cut(s)	401
AfaI	GTAC	3 cut(s)	197, 449, 536
AfiI	CCNNNNNNNGG	3 cut(s)	346, 394, 624
AgeI	ACCGGT	1 cut(s)	522
AgsI	TTSAA	2 cut(s)	601, 674
AjiI	CACGTC	1 cut(s)	499
AjnI	CCWGG	1 cut(s)	411
AluBI	AGCT	2 cut(s)	171, 220
AluI	AGCT	2 cut(s)	171, 220
Alw26I	GTCTC	2 cut(s)	296, 367
AlwI	GGATC	3 cut(s)	370, 622, 635
AoxI	GGCC	2 cut(s)	336, 615
ApoI	RAATTY	1 cut(s)	401
AsiGI	ACCGGT	1 cut(s)	522
AspLEI	GCGC	1 cut(s)	568
AspS9I	GGNCC	6 cut(s)	324, 337, 409, 418, 520, 615
AsuC2I	CCSGG	3 cut(s)	322, 347, 380
AsuHPI	GGTGA	1 cut(s)	656
AsuII	TTCGAA	1 cut(s)	166
AvaII	GGWCC	4 cut(s)	324, 409, 418, 520
BamHI	GGATCC	1 cut(s)	627
BbsI	GAAGAC	2 cut(s)	493, 551
BceAI	ACGGC	3 cut(s)	422, 494, 553
BcgI	CGANNNNNNTGC	2 cut(s)	387, 421
BciT130I	CCWGG	1 cut(s)	413
BcnI	CCSGG	3 cut(s)	322, 347, 380
BcoDI	GTCTC	2 cut(s)	296, 367
BfaI	CTAG	1 cut(s)	83
BisI	GCNGC	2 cut(s)	392, 618
BlsI	GCNGC	2 cut(s)	393, 619
Bme1390I	CCNGG	4 cut(s)	322, 347, 380, 413
Bme18I	GGWCC	4 cut(s)	324, 409, 418, 520
BmgBI	CACGTC	1 cut(s)	499
BmgT120I	GGNCC	6 cut(s)	324, 337, 409, 418, 520, 615
BmiI	GGNNCC	3 cut(s)	185, 420, 629
BmrFI	CCNGG	4 cut(s)	322, 347, 380, 413
BmrI	ACTGGG	2 cut(s)	182, 633
BmuI	ACTGGG	2 cut(s)	182, 633
BpiI	GAAGAC	2 cut(s)	493, 551
BplI	GAGNNNNNCTC	2 cut(s)	341, 373
Bpu14I	TTCGAA	1 cut(s)	166
BpuMI	CCSGG	3 cut(s)	322, 347, 380
BsaI	GGTCTC	1 cut(s)	296
BsaJI	CCNNGG	1 cut(s)	366
BsaWI	WCCGGW	1 cut(s)	522
BsaXI	ACNNNNNCTCC	2 cut(s)	347, 377
Bsc4I	CCNNNNNNNGG	3 cut(s)	346, 394, 624
Bse118I	RCCGGY	2 cut(s)	334, 522
Bse1I	ACTGG	2 cut(s)	188, 628
BseBI	CCWGG	1 cut(s)	413
BseDI	CCNNGG	1 cut(s)	366
BseGI	GGATG	2 cut(s)	14, 225
BseLI	CCNNNNNNNGG	3 cut(s)	346, 394, 624
BseMII	CTCAG	1 cut(s)	282
BseNI	ACTGG	2 cut(s)	188, 628
BseRI	GAGGAG	1 cut(s)	11
BseYI	CCCAGC	1 cut(s)	286
Bsh1236I	CGCG	1 cut(s)	368
BshFI	GGCC	2 cut(s)	338, 617
BshTI	ACCGGT	1 cut(s)	522
BsiSI	CCGG	6 cut(s)	322, 335, 347, 379, 425, 523
BslFI	GGGAC	1 cut(s)	21
BslI	CCNNNNNNNGG	3 cut(s)	346, 394, 624
BsmAI	GTCTC	2 cut(s)	296, 367
BsmBI	CGTCTC	1 cut(s)	367
BsmFI	GGGAC	1 cut(s)	21
BsnI	GGCC	2 cut(s)	338, 617
Bso31I	GGTCTC	1 cut(s)	296
Bsp119I	TTCGAA	1 cut(s)	166
Bsp143I	GATC	2 cut(s)	375, 627
BspACI	CCGC	7 cut(s)	332, 366, 368, 392, 422, 554, 618
BspANI	GGCC	2 cut(s)	338, 617
BspCNI	CTCAG	1 cut(s)	281
BspFNI	CGCG	1 cut(s)	368
BspLI	GGNNCC	3 cut(s)	185, 420, 629
BspPI	GGATC	3 cut(s)	370, 622, 635
BspQI	GCTCTTC	1 cut(s)	227
BspT104I	TTCGAA	1 cut(s)	166
BspTNI	GGTCTC	1 cut(s)	296
BsrFI	RCCGGY	2 cut(s)	334, 522
BsrI	ACTGG	2 cut(s)	188, 628
BssAI	RCCGGY	2 cut(s)	334, 522
BssECI	CCNNGG	1 cut(s)	366
BssMI	GATC	2 cut(s)	375, 627
Bst2UI	CCWGG	1 cut(s)	413
Bst4CI	ACNGT	1 cut(s)	644
Bst6I	CTCTTC	2 cut(s)	55, 227
BstBI	TTCGAA	1 cut(s)	166
BstC8I	GCNNGC	3 cut(s)	336, 396, 554
BstDEI	CTNAG	1 cut(s)	268
BstDSI	CCRYGG	1 cut(s)	366
BstF5I	GGATG	2 cut(s)	14, 225
BstFNI	CGCG	1 cut(s)	368
BstHHI	GCGC	1 cut(s)	568
BstKTI	GATC	2 cut(s)	378, 630
BstMAI	GTCTC	2 cut(s)	296, 367
BstMBI	GATC	2 cut(s)	375, 627
BstMWI	GCNNNNNNNGC	1 cut(s)	217
BstNI	CCWGG	1 cut(s)	413
BstNSI	RCATGY	1 cut(s)	552
BstSCI	CCNGG	4 cut(s)	320, 345, 378, 411
BstUI	CGCG	1 cut(s)	368
BstV2I	GAAGAC	2 cut(s)	493, 551
BstX2I	RGATCY	1 cut(s)	627
BstYI	RGATCY	1 cut(s)	627
BsuRI	GGCC	2 cut(s)	338, 617
BtgI	CCRYGG	1 cut(s)	366
BtrI	CACGTC	1 cut(s)	499
BtsCI	GGATG	2 cut(s)	14, 225
Cac8I	GCNNGC	3 cut(s)	336, 396, 554
CfoI	GCGC	1 cut(s)	568
Cfr10I	RCCGGY	2 cut(s)	334, 522
Cfr13I	GGNCC	6 cut(s)	324, 337, 409, 418, 520, 615
Cfr42I	CCGCGG	1 cut(s)	369
CpoI	CGGWCCG	1 cut(s)	324
CsiI	ACCWGGT	1 cut(s)	411
Csp6I	GTAC	3 cut(s)	196, 448, 535
CspAI	ACCGGT	1 cut(s)	522
CspI	CGGWCCG	1 cut(s)	324
CviAII	CATG	3 cut(s)	33, 432, 549
CviJI	RGCY	8 cut(s)	171, 220, 272, 338, 481, 610, 617, 669
CviKI_1	RGCY	8 cut(s)	171, 220, 272, 338, 481, 610, 617, 669
CviQI	GTAC	3 cut(s)	196, 448, 535
DdeI	CTNAG	1 cut(s)	268
DpnI	GATC	2 cut(s)	377, 629
DpnII	GATC	2 cut(s)	375, 627
DrdI	GACNNNNNNGTC	1 cut(s)	527
DseDI	GACNNNNNNGTC	1 cut(s)	527
Eam1104I	CTCTTC	2 cut(s)	55, 227
EarI	CTCTTC	2 cut(s)	55, 227
Eco31I	GGTCTC	1 cut(s)	296
Eco47I	GGWCC	4 cut(s)	324, 409, 418, 520
EcoRII	CCWGG	1 cut(s)	411
Esp3I	CGTCTC	1 cut(s)	367
FaeI	CATG	3 cut(s)	36, 435, 552
FaiI	YATR	8 cut(s)	10, 34, 120, 135, 433, 550, 575, 587
FaqI	GGGAC	1 cut(s)	21
FatI	CATG	3 cut(s)	32, 431, 548
FauI	CCCGC	3 cut(s)	339, 429, 561
Fnu4HI	GCNGC	2 cut(s)	392, 618
FokI	GGATG	1 cut(s)	212
Fsp4HI	GCNGC	2 cut(s)	392, 618
FspBI	CTAG	1 cut(s)	83
GlaI	GCGC	1 cut(s)	567
GluI	GCNGC	2 cut(s)	392, 618
GsaI	CCCAGC	1 cut(s)	290
HaeIII	GGCC	2 cut(s)	338, 617
HapII	CCGG	6 cut(s)	322, 335, 347, 379, 425, 523
HhaI	GCGC	1 cut(s)	568
Hin1II	CATG	3 cut(s)	36, 435, 552
Hin6I	GCGC	1 cut(s)	566
HinP1I	GCGC	1 cut(s)	566
HindIII	AAGCTT	1 cut(s)	169
HinfI	GANTC	4 cut(s)	141, 205, 342, 428
HpaII	CCGG	6 cut(s)	322, 335, 347, 379, 425, 523
HphI	GGTGA	1 cut(s)	656
Hpy166II	GTNNAC	3 cut(s)	198, 418, 520
Hpy188I	TCNGA	6 cut(s)	127, 257, 328, 375, 409, 580
Hpy188III	TCNNGA	2 cut(s)	83, 484
Hpy8I	GTNNAC	3 cut(s)	198, 418, 520
Hpy99I	CGWCG	1 cut(s)	480
HpyAV	CCTTC	1 cut(s)	283
HpyCH4III	ACNGT	1 cut(s)	644
HpyCH4IV	ACGT	1 cut(s)	498
HpyCH4V	TGCA	1 cut(s)	589
HpyF10VI	GCNNNNNNNGC	1 cut(s)	217
HpyF3I	CTNAG	1 cut(s)	268
HpySE526I	ACGT	1 cut(s)	498
Hsp92II	CATG	3 cut(s)	36, 435, 552
HspAI	GCGC	1 cut(s)	566
KroI	GCCGGC	1 cut(s)	334
KroNI	GCCGGC	1 cut(s)	336
KspI	CCGCGG	1 cut(s)	369
Kzo9I	GATC	2 cut(s)	375, 627
LguI	GCTCTTC	1 cut(s)	227
MabI	ACCWGGT	1 cut(s)	411
MaeI	CTAG	1 cut(s)	83
MaeII	ACGT	1 cut(s)	498
MaeIII	GTNAC	1 cut(s)	494
MalI	GATC	2 cut(s)	377, 629
MboI	GATC	2 cut(s)	375, 627
MboII	GAAGA	5 cut(s)	42, 214, 268, 493, 556
MflI	RGATCY	1 cut(s)	627
MluCI	AATT	3 cut(s)	401, 487, 674
MlyI	GAGTC	1 cut(s)	437
MmeI	TCCRAC	1 cut(s)	351
MroNI	GCCGGC	1 cut(s)	334
MseI	TTAA	1 cut(s)	176
MspA1I	CMGCKG	3 cut(s)	368, 394, 556
MspI	CCGG	6 cut(s)	322, 335, 347, 379, 425, 523
MspR9I	CCNGG	4 cut(s)	322, 347, 380, 413
MvaI	CCWGG	1 cut(s)	413
MvnI	CGCG	1 cut(s)	368
MwoI	GCNNNNNNNGC	1 cut(s)	217
NaeI	GCCGGC	1 cut(s)	336
NciI	CCSGG	3 cut(s)	322, 347, 380
NdeII	GATC	2 cut(s)	375, 627
NgoMIV	GCCGGC	1 cut(s)	334
NlaIII	CATG	3 cut(s)	36, 435, 552
NlaIV	GGNNCC	3 cut(s)	185, 420, 629
NmuCI	GTSAC	1 cut(s)	494
NspI	RCATGY	1 cut(s)	552
NspV	TTCGAA	1 cut(s)	166
PciSI	GCTCTTC	1 cut(s)	227
PdiI	GCCGGC	1 cut(s)	336
PfeI	GAWTC	3 cut(s)	141, 205, 342
PfoI	TCCNGGA	2 cut(s)	345, 378
PinAI	ACCGGT	1 cut(s)	522
PkrI	GCNGC	2 cut(s)	393, 619
PleI	GAGTC	1 cut(s)	436
PpsI	GAGTC	1 cut(s)	436
Psp6I	CCWGG	1 cut(s)	411
PspFI	CCCAGC	1 cut(s)	286
PspGI	CCWGG	1 cut(s)	411
PspN4I	GGNNCC	3 cut(s)	185, 420, 629
PspPI	GGNCC	6 cut(s)	324, 337, 409, 418, 520, 615
PsuI	RGATCY	1 cut(s)	627
RsaI	GTAC	3 cut(s)	197, 449, 536
RsaNI	GTAC	3 cut(s)	196, 448, 535
Rsr2I	CGGWCCG	1 cut(s)	324
RsrII	CGGWCCG	1 cut(s)	324
SacII	CCGCGG	1 cut(s)	369
SapI	GCTCTTC	1 cut(s)	227
SaqAI	TTAA	1 cut(s)	176
SatI	GCNGC	2 cut(s)	392, 618
Sau3AI	GATC	2 cut(s)	375, 627
Sau96I	GGNCC	6 cut(s)	324, 337, 409, 418, 520, 615
SchI	GAGTC	1 cut(s)	437
ScrFI	CCNGG	4 cut(s)	322, 347, 380, 413
SetI	ASST	5 cut(s)	159, 173, 222, 414, 501
SexAI	ACCWGGT	1 cut(s)	411
Sfr303I	CCGCGG	1 cut(s)	369
SfuI	TTCGAA	1 cut(s)	166
SgrBI	CCGCGG	1 cut(s)	369
SinI	GGWCC	4 cut(s)	324, 409, 418, 520
Sse9I	AATT	3 cut(s)	401, 487, 674
SsiI	CCGC	7 cut(s)	332, 366, 368, 392, 422, 554, 618
SspI	AATATT	1 cut(s)	299
SspMI	CTAG	1 cut(s)	83
StyD4I	CCNGG	4 cut(s)	320, 345, 378, 411
TaaI	ACNGT	1 cut(s)	644
TaiI	ACGT	1 cut(s)	501
TaqI	TCGA	3 cut(s)	166, 306, 456
TasI	AATT	3 cut(s)	401, 487, 674
TauI	GCSGC	2 cut(s)	394, 620
TfiI	GAWTC	3 cut(s)	141, 205, 342
Tru1I	TTAA	1 cut(s)	176
Tru9I	TTAA	1 cut(s)	176
TseFI	GTSAC	1 cut(s)	494
Tsp45I	GTSAC	1 cut(s)	494
TspDTI	ATGAA	4 cut(s)	107, 214, 292, 562
TspGWI	ACGGA	1 cut(s)	349
VpaK11BI	GGWCC	4 cut(s)	324, 409, 418, 520
XapI	RAATTY	1 cut(s)	401
XbaI	TCTAGA	1 cut(s)	82
XceI	RCATGY	1 cut(s)	552
XspI	CTAG	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.