pycom14g11280

Growth-regulating factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0007981
Physical Location & Seq
Forward (+)
14255481 .. 14257876
2396 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1305 bp
ATGGGACAAAGAAATGGGTTTGCTGAGAAGGGAGCAGCAGCAGAAACAGAGTGGCTGGGTTTGATGATGCAAAAATCCCAGCAAACCCAACAAACCCAGCAATCATTTCCTCGGAAGAAAACGATGATGGTGATGCATCACCATCATCATCATCATGATCCTCTGCTTGCCAGTGCAGGAAGAGAAGCTTGTGGGGTTTGGGATAACAGTCCTGCTTCTGGTGGTGGACTTTTGTTTTGCAACACAAGCAATCCAGTCTCGAGTTGTCCGACTGATTTATATCCTGTCGGTTCTGATTTTGTCCTCCCAAAGTCTCTGCAGCACCATCTACCTTGCTCTGATCACAGCCTGGCTTTCAGTTCCACAGTGGTGAAAGGTTCACTGGAGTTGGGGATTTCTGGGAGCTCAGATCCGGAGCCATGGAGGTGCAAAAGAACAGATGGAAAAAAATGGAGGTGTTCCCGAGATGTAGCTTTTGATCAGAAGTATTGTGAGAGACATGCTCACAAGACCAGGAACCGTTCAAGAAAGCCTGTGGATTCCCAAACCCTAAACCCCAACCTCCTCAGCACCAACAACAACAACATGAGAAGTCCTAGGTCTAATTTTTTCAGACAAAACCACATCAGCAGCCAGACAACTCCATTTTCTTGCAACGTGGTTCCTAGTACTGCTGCTGGTGGATCACATGTCCAGCCCAGGTCCTCGGCATGGTTCATGAATGGGGAAGCCCCAGCTGTGGGTGGTTCAAACCAAGAGTGGGAACAAATGATGCCATCCATGATGGGCCTAAAGAGGAGCAGCAGCAGCTGCCCCTACACCAAGCCTACTAACACAGATGTGGATATTCCGAAGCAGCAAACTGAAAGCTTACTAAATTTGCACACAGATTGCACGGGTGAAATCCAAGGCCAGCAAACTCAACAGACAAGGCATTTCATCGATGCATGGTCCAAGTCAGCATCAGCAGAGAGAGAAGAAGATAGGGTCTTTGTTTCTTCAAACCAGAAGCTTCCCCTTTCATCTCTCACTCTATCAATGTGTGGTGGGAAAGGAAGCAATGAAGAGAGAGAGAGTACCCAAATGGGGCTTGGAGTTTTGGGGGCAGAGAGGGAAAGTGTTGGGGATTTGAAGTCTCAGTGGACGAACCCAATGTCTTGGATGATGGGGTCACCACCTGGTGGACCATTGGCTGAAGCTTTGTGCCTTGGCATTGCTGGTGGTTCTAATGGCAGCGACAGTGGCTCCACCAGCTATAGGAGCTCACGTGGAGATGGTAGGCAAGAATATGATTTGATTAACTAA

Protein Analysis

435

Amino Acids

47.47

Weight (kDa)

7.98

Isoelectric Point (pI)

51.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRC PF08879 138 - 179 4.1e-19 WRC
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1181
AccIII TCCGGA 1 cut(s) 412
AclWI GGATC 3 cut(s) 152, 404, 691
AcsI RAATTY 1 cut(s) 877
AcuI CTGAAG 1 cut(s) 1215
AcvI CACGTG 1 cut(s) 1268
AdeI CACNNNGTG 1 cut(s) 1181
AfaI GTAC 2 cut(s) 670, 1078
AfiI CCNNNNNNNGG 8 cut(s) 218, 711, 739, 740, 760, 1086, 1181, 1257
AflIII ACRYGT 1 cut(s) 688
AgsI TTSAA 4 cut(s) 525, 750, 1002, 1132
AjnI CCWGG 4 cut(s) 348, 512, 698, 1177
AleI CACNNNNGTG 2 cut(s) 368, 839
Alw21I GWGCWC 2 cut(s) 407, 1265
Alw26I GTCTC 4 cut(s) 262, 318, 490, 1140
AlwI GGATC 3 cut(s) 152, 404, 691
AlwNI CAGNNNCTG 1 cut(s) 810
Ama87I CYCGRG 2 cut(s) 259, 462
Aor13HI TCCGGA 1 cut(s) 412
AoxI GGCC 2 cut(s) 787, 910
ApoI RAATTY 1 cut(s) 877
ArsI GACNNNNNNTTYG 4 cut(s) 219, 251, 1139, 1171
AspA2I CCTAGG 1 cut(s) 596
AspS9I GGNCC 4 cut(s) 702, 787, 951, 1184
AsuHPI GGTGA 5 cut(s) 131, 142, 382, 911, 1164
AvaI CYCGRG 2 cut(s) 259, 462
AvaII GGWCC 3 cut(s) 702, 951, 1184
AvrII CCTAGG 1 cut(s) 596
BanII GRGCYC 2 cut(s) 407, 1265
BbrPI CACGTG 1 cut(s) 1268
Bbv12I GWGCWC 2 cut(s) 407, 1265
BbvCI CCTCAGC 1 cut(s) 566
BccI CCATC 8 cut(s) 121, 150, 333, 434, 778, 784, 1159, 1268
BciT130I CCWGG 4 cut(s) 350, 514, 700, 1179
BclI TGATCA 2 cut(s) 340, 478
BcoDI GTCTC 4 cut(s) 262, 318, 490, 1140
BfaI CTAG 2 cut(s) 597, 666
BfmI CTRYAG 2 cut(s) 317, 1255
BlnI CCTAGG 1 cut(s) 596
BmcAI AGTACT 1 cut(s) 670
Bme1390I CCNGG 4 cut(s) 350, 514, 700, 1179
Bme18I GGWCC 3 cut(s) 702, 951, 1184
BmeT110I CYCGRG 2 cut(s) 259, 462
BmgT120I GGNCC 4 cut(s) 702, 787, 951, 1184
BmiI GGNNCC 4 cut(s) 417, 518, 663, 1246
BmrFI CCNGG 4 cut(s) 350, 514, 700, 1179
BmsI GCATC 6 cut(s) 57, 123, 145, 762, 934, 971
BplI GAGNNNNNCTC 2 cut(s) 487, 519
BpmI CTGGAG 1 cut(s) 404
Bpu10I CCTNAGC 1 cut(s) 566
Bsa29I ATCGAT 1 cut(s) 942
BsaAI YACGTR 1 cut(s) 1268
BsaBI GATNNNNATC 1 cut(s) 279
BsaJI CCNNGG 7 cut(s) 110, 419, 596, 698, 705, 907, 1207
BsaWI WCCGGW 1 cut(s) 412
BsaXI ACNNNNNCTCC 4 cut(s) 1229, 1252, 1259, 1282
Bsc4I CCNNNNNNNGG 8 cut(s) 218, 711, 739, 740, 760, 1086, 1181, 1257
Bse1I ACTGG 3 cut(s) 171, 254, 387
Bse3DI GCAATG 2 cut(s) 1066, 1212
Bse8I GATNNNNATC 1 cut(s) 279
BseAI TCCGGA 1 cut(s) 412
BseBI CCWGG 4 cut(s) 350, 514, 700, 1179
BseCI ATCGAT 1 cut(s) 942
BseDI CCNNGG 7 cut(s) 110, 419, 596, 698, 705, 907, 1207
BseGI GGATG 2 cut(s) 776, 1167
BseJI GATNNNNATC 1 cut(s) 279
BseLI CCNNNNNNNGG 8 cut(s) 218, 711, 739, 740, 760, 1086, 1181, 1257
BseMI GCAATG 2 cut(s) 1066, 1212
BseMII CTCAG 4 cut(s) 15, 420, 580, 1151
BseNI ACTGG 3 cut(s) 171, 254, 387
BseRI GAGGAG 2 cut(s) 554, 811
BseYI CCCAGC 4 cut(s) 55, 78, 96, 733
BsgI GTGCAG 1 cut(s) 195
BshFI GGCC 2 cut(s) 789, 912
BshVI ATCGAT 1 cut(s) 942
BsiHKAI GWGCWC 2 cut(s) 407, 1265
BsiHKCI CYCGRG 2 cut(s) 259, 462
BsiSI CCGG 1 cut(s) 413
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 8 cut(s) 218, 711, 739, 740, 760, 1086, 1181, 1257
BsmAI GTCTC 4 cut(s) 262, 318, 490, 1140
BsmFI GGGAC 1 cut(s) 18
BsnI GGCC 2 cut(s) 789, 912
BsoBI CYCGRG 2 cut(s) 259, 462
Bsp1286I GDGCHC 2 cut(s) 407, 1265
Bsp13I TCCGGA 1 cut(s) 412
Bsp143I GATC 5 cut(s) 157, 340, 409, 478, 683
Bsp19I CCATGG 1 cut(s) 419
BspANI GGCC 2 cut(s) 789, 912
BspCNI CTCAG 4 cut(s) 16, 419, 579, 1150
BspDI ATCGAT 1 cut(s) 942
BspEI TCCGGA 1 cut(s) 412
BspHI TCATGA 2 cut(s) 154, 717
BspLI GGNNCC 4 cut(s) 417, 518, 663, 1246
BspMAI CTGCAG 1 cut(s) 321
BspPI GGATC 3 cut(s) 152, 404, 691
BsrDI GCAATG 2 cut(s) 1066, 1212
BsrI ACTGG 3 cut(s) 171, 254, 387
BssECI CCNNGG 7 cut(s) 110, 419, 596, 698, 705, 907, 1207
BssMI GATC 5 cut(s) 157, 340, 409, 478, 683
BssT1I CCWWGG 4 cut(s) 419, 596, 907, 1207
Bst2UI CCWGG 4 cut(s) 350, 514, 700, 1179
Bst4CI ACNGT 4 cut(s) 209, 367, 521, 1241
Bst6I CTCTTC 2 cut(s) 175, 1059
BstAPI GCANNNNNTGC 1 cut(s) 810
BstBAI YACGTR 1 cut(s) 1268
BstC8I GCNNGC 2 cut(s) 168, 914
BstDEI CTNAG 4 cut(s) 24, 406, 566, 1137
BstDSI CCRYGG 1 cut(s) 419
BstEII GGTNACC 1 cut(s) 1170
BstF5I GGATG 2 cut(s) 776, 1167
BstKTI GATC 5 cut(s) 160, 343, 412, 481, 686
BstMAI GTCTC 4 cut(s) 262, 318, 490, 1140
BstMBI GATC 5 cut(s) 157, 340, 409, 478, 683
BstMWI GCNNNNNNNGC 6 cut(s) 246, 807, 810, 1242, 1251, 1260
BstNI CCWGG 4 cut(s) 350, 514, 700, 1179
BstNSI RCATGY 2 cut(s) 503, 692
BstPI GGTNACC 1 cut(s) 1170
BstSCI CCNGG 4 cut(s) 348, 512, 698, 1177
BstSFI CTRYAG 2 cut(s) 317, 1255
BstX2I RGATCY 1 cut(s) 409
BstXI CCANNNNNNTGG 1 cut(s) 1158
BstYI RGATCY 1 cut(s) 409
Bsu15I ATCGAT 1 cut(s) 942
BsuRI GGCC 2 cut(s) 789, 912
BsuTUI ATCGAT 1 cut(s) 942
BtgI CCRYGG 1 cut(s) 419
BtsCI GGATG 2 cut(s) 776, 1167
BtsIMutI CAGTG 5 cut(s) 178, 372, 380, 1145, 1246
Cac8I GCNNGC 2 cut(s) 168, 914
CaiI CAGNNNCTG 1 cut(s) 810
CciI TCATGA 2 cut(s) 154, 717
Cfr13I GGNCC 4 cut(s) 702, 787, 951, 1184
ClaI ATCGAT 1 cut(s) 942
CsiI ACCWGGT 1 cut(s) 1177
Csp6I GTAC 2 cut(s) 669, 1077
CviAII CATG 9 cut(s) 155, 420, 500, 586, 689, 711, 718, 781, 948
CviQI GTAC 2 cut(s) 669, 1077
DdeI CTNAG 4 cut(s) 24, 406, 566, 1137
DpnI GATC 5 cut(s) 159, 342, 411, 480, 685
DpnII GATC 5 cut(s) 157, 340, 409, 478, 683
DraIII CACNNNGTG 1 cut(s) 1181
Eam1104I CTCTTC 2 cut(s) 175, 1059
EarI CTCTTC 2 cut(s) 175, 1059
Ecl136II GAGCTC 2 cut(s) 405, 1263
Eco130I CCWWGG 4 cut(s) 419, 596, 907, 1207
Eco24I GRGCYC 2 cut(s) 407, 1265
Eco47I GGWCC 3 cut(s) 702, 951, 1184
Eco53kI GAGCTC 2 cut(s) 405, 1263
Eco57I CTGAAG 1 cut(s) 1215
Eco72I CACGTG 1 cut(s) 1268
Eco88I CYCGRG 2 cut(s) 259, 462
Eco91I GGTNACC 1 cut(s) 1170
EcoICRI GAGCTC 2 cut(s) 405, 1263
EcoO109I RGGNCCY 1 cut(s) 702
EcoO65I GGTNACC 1 cut(s) 1170
EcoRII CCWGG 4 cut(s) 348, 512, 698, 1177
EcoT14I CCWWGG 4 cut(s) 419, 596, 907, 1207
EcoT22I ATGCAT 2 cut(s) 138, 949
EcoT38I GRGCYC 2 cut(s) 407, 1265
ErhI CCWWGG 4 cut(s) 419, 596, 907, 1207
FaeI CATG 9 cut(s) 158, 423, 503, 589, 692, 714, 721, 784, 951
FalI AAGNNNNNCTT 2 cut(s) 172, 204
FaqI GGGAC 1 cut(s) 18
FatI CATG 9 cut(s) 154, 419, 499, 585, 688, 710, 717, 780, 947
FbaI TGATCA 2 cut(s) 340, 478
FokI GGATG 2 cut(s) 763, 1174
FriOI GRGCYC 2 cut(s) 407, 1265
FspBI CTAG 2 cut(s) 597, 666
GsaI CCCAGC 4 cut(s) 59, 82, 100, 737
GsuI CTGGAG 1 cut(s) 404
HaeIII GGCC 2 cut(s) 789, 912
HapII CCGG 1 cut(s) 413
Hin1II CATG 9 cut(s) 158, 423, 503, 589, 692, 714, 721, 784, 951
HindIII AAGCTT 4 cut(s) 186, 868, 1010, 1197
HinfI GANTC 1 cut(s) 539
HpaII CCGG 1 cut(s) 413
HphI GGTGA 5 cut(s) 131, 142, 382, 911, 1164
Hpy166II GTNNAC 4 cut(s) 227, 380, 1143, 1184
Hpy188I TCNGA 8 cut(s) 114, 270, 295, 340, 409, 483, 614, 852
Hpy188III TCNNGA 6 cut(s) 155, 259, 413, 462, 525, 718
Hpy8I GTNNAC 4 cut(s) 227, 380, 1143, 1184
HpyAV CCTTC 1 cut(s) 22
HpyCH4III ACNGT 4 cut(s) 209, 367, 521, 1241
HpyCH4IV ACGT 2 cut(s) 657, 1267
HpyF10VI GCNNNNNNNGC 6 cut(s) 246, 807, 810, 1242, 1251, 1260
HpyF3I CTNAG 4 cut(s) 24, 406, 566, 1137
HpySE526I ACGT 2 cut(s) 657, 1267
Hsp92II CATG 9 cut(s) 158, 423, 503, 589, 692, 714, 721, 784, 951
Kpn2I TCCGGA 1 cut(s) 412
Ksp22I TGATCA 2 cut(s) 340, 478
Kzo9I GATC 5 cut(s) 157, 340, 409, 478, 683
LmnI GCTCC 6 cut(s) 32, 402, 415, 798, 1250, 1260
LweI GCATC 6 cut(s) 57, 123, 145, 762, 934, 971
MabI ACCWGGT 1 cut(s) 1177
MaeI CTAG 2 cut(s) 597, 666
MaeII ACGT 2 cut(s) 657, 1267
MaeIII GTNAC 1 cut(s) 1170
MalI GATC 5 cut(s) 159, 342, 411, 480, 685
MboI GATC 5 cut(s) 157, 340, 409, 478, 683
MboII GAAGA 6 cut(s) 127, 192, 989, 990, 992, 1076
MflI RGATCY 1 cut(s) 409
MhlI GDGCHC 2 cut(s) 407, 1265
MluCI AATT 2 cut(s) 604, 877
MmeI TCCRAC 1 cut(s) 293
Mph1103I ATGCAT 2 cut(s) 138, 949
MroI TCCGGA 1 cut(s) 412
MseI TTAA 1 cut(s) 1299
MslI CAYNNNNRTG 4 cut(s) 153, 368, 424, 839
MspA1I CMGCKG 2 cut(s) 737, 810
MspI CCGG 1 cut(s) 413
MspR9I CCNGG 4 cut(s) 350, 514, 700, 1179
MvaI CCWGG 4 cut(s) 350, 514, 700, 1179
MwoI GCNNNNNNNGC 6 cut(s) 246, 807, 810, 1242, 1251, 1260
NcoI CCATGG 1 cut(s) 419
NdeII GATC 5 cut(s) 157, 340, 409, 478, 683
NlaIII CATG 9 cut(s) 158, 423, 503, 589, 692, 714, 721, 784, 951
NlaIV GGNNCC 4 cut(s) 417, 518, 663, 1246
NmeAIII GCCGAG 1 cut(s) 686
NmuCI GTSAC 1 cut(s) 1170
NsiI ATGCAT 2 cut(s) 138, 949
NspI RCATGY 2 cut(s) 503, 692
OliI CACNNNNGTG 2 cut(s) 368, 839
PaeR7I CTCGAG 1 cut(s) 259
PagI TCATGA 2 cut(s) 154, 717
PciI ACATGT 1 cut(s) 688
PcsI WCGNNNNNNNCGW 1 cut(s) 266
PfeI GAWTC 1 cut(s) 539
PflMI CCANNNNNTGG 1 cut(s) 1181
PmaCI CACGTG 1 cut(s) 1268
PmlI CACGTG 1 cut(s) 1268
Ppu21I YACGTR 1 cut(s) 1268
PpuMI RGGWCCY 1 cut(s) 702
PscI ACATGT 1 cut(s) 688
Psp124BI GAGCTC 2 cut(s) 407, 1265
Psp5II RGGWCCY 1 cut(s) 702
Psp6I CCWGG 4 cut(s) 348, 512, 698, 1177
PspCI CACGTG 1 cut(s) 1268
PspEI GGTNACC 1 cut(s) 1170
PspFI CCCAGC 4 cut(s) 55, 78, 96, 733
PspGI CCWGG 4 cut(s) 348, 512, 698, 1177
PspN4I GGNNCC 4 cut(s) 417, 518, 663, 1246
PspPI GGNCC 4 cut(s) 702, 787, 951, 1184
PspPPI RGGWCCY 1 cut(s) 702
PstI CTGCAG 1 cut(s) 321
PstNI CAGNNNCTG 1 cut(s) 810
PsuI RGATCY 1 cut(s) 409
PvuII CAGCTG 2 cut(s) 737, 810
RsaI GTAC 2 cut(s) 670, 1078
RsaNI GTAC 2 cut(s) 669, 1077
RseI CAYNNNNRTG 4 cut(s) 153, 368, 424, 839
SacI GAGCTC 2 cut(s) 407, 1265
SaqAI TTAA 1 cut(s) 1299
Sau3AI GATC 5 cut(s) 157, 340, 409, 478, 683
Sau96I GGNCC 4 cut(s) 702, 787, 951, 1184
ScaI AGTACT 1 cut(s) 670
ScrFI CCNGG 4 cut(s) 350, 514, 700, 1179
SduI GDGCHC 2 cut(s) 407, 1265
SexAI ACCWGGT 1 cut(s) 1177
SfaNI GCATC 6 cut(s) 57, 123, 145, 762, 934, 971
SfcI CTRYAG 2 cut(s) 317, 1255
Sfr274I CTCGAG 1 cut(s) 259
SinI GGWCC 3 cut(s) 702, 951, 1184
SlaI CTCGAG 1 cut(s) 259
SmiMI CAYNNNNRTG 4 cut(s) 153, 368, 424, 839
SmlI CTYRAG 1 cut(s) 259
SmoI CTYRAG 1 cut(s) 259
Sse9I AATT 2 cut(s) 604, 877
SspMI CTAG 2 cut(s) 597, 666
SstI GAGCTC 2 cut(s) 407, 1265
StyD4I CCNGG 4 cut(s) 348, 512, 698, 1177
StyI CCWWGG 4 cut(s) 419, 596, 907, 1207
TaaI ACNGT 4 cut(s) 209, 367, 521, 1241
TaiI ACGT 2 cut(s) 660, 1270
TaqI TCGA 2 cut(s) 260, 942
TasI AATT 2 cut(s) 604, 877
TatI WGTACW 1 cut(s) 668
TfiI GAWTC 1 cut(s) 539
Tru1I TTAA 1 cut(s) 1299
Tru9I TTAA 1 cut(s) 1299
TscAI CASTG 5 cut(s) 178, 372, 387, 1145, 1246
TseFI GTSAC 1 cut(s) 1170
Tsp45I GTSAC 1 cut(s) 1170
TspDTI ATGAA 5 cut(s) 706, 734, 928, 1011, 1077
TspRI CASTG 5 cut(s) 178, 372, 387, 1145, 1246
Van91I CCANNNNNTGG 1 cut(s) 1181
VpaK11BI GGWCC 3 cut(s) 702, 951, 1184
XapI RAATTY 1 cut(s) 877
XceI RCATGY 2 cut(s) 503, 692
XcmI CCANNNNNNNNNTGG 1 cut(s) 1088
XhoI CTCGAG 1 cut(s) 259
XmaJI CCTAGG 1 cut(s) 596
XspI CTAG 2 cut(s) 597, 666
ZrmI AGTACT 1 cut(s) 670
Zsp2I ATGCAT 2 cut(s) 138, 949
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.