Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0010013

Physical Location & Seq

Genomic Coordinates Forward (+)

16077375 .. 16081007

Gene Structure 3633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g13060.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGGAGGTGGAACTGAAGGAGTTATTGAGCGACCTCGAATCGCTGAAGAAATCGCTCTCCGATCCTTCTCATCATGCTCCCATCGATAAGCTACAATTGCGTGTAGAACGCCTTACGAGCCTTGCAAATCCCGGACCTGTTCGGCGTTCAAAAGTGAAGGATATGAGTGCCGAGGTTGTAGATAGCAATCCTTACAGTAGGCTTATGGCACTTCAAAGGATGGGCATTGTGGAAAACTATGAAAGAATACGGGACTTCTCAGTTGCCATTGTTGGAGTAGGTGGTGTAGGAAGTGTAGCAGCTGAGATGCTAACAAGATGTGGTATTGGTCGCCTTTTGTTGTATGATTATGACAAAGTAGAGTTAGCTAACATGAATAGGTTATTCTTTCGACCAGAGCAGAGTGGTATGACGAAAACAGATGCTGCTGTACAGACCCTTTCAGACATAAATCCCGATGTTGTGCTTGAGAGCTATACACTGAACATCACAACTGTGCAAGGTTTTGATACCTTTATGGCTAGTTTAAAAAATAAATCATTTCGCCGAAATAAAGAAGGCAGTGGAGTGGACCTTGTACTAAGCTGTGTTGATAATTATGAAGCAAGAATGGCTGTTAATCAGGCTTGCAATGAACTGAATCAGACATGGATGGAGTCTGGTGTGTCTGAGGATGCTGTTTCAGGCCATATTCAGTTGCTGATTCCTGGTGAAACTGCCTGTTTTGCATGTGCACCACCTTTGGTTGTGGCATCTGGAGTGGATGAACGTACACTTAAGCGTGAAGGGGTGTGTGCTGCATCTTTACCTACCACTATGGGAGTTGTTGCTGGGCTTCTAGTCCAAAATACACTAAAATACTTGCTGAACTTCGGAAACGTCTCCCCATACTTGGGATATAATTCTCTTAAAGACTTCTTCCCAACTATGGAAATGAAGCCAAACCCTCAGTGTTCTAATTTTGCTTGTCTGGAACGGCAGAAAGAGTACTTGCTTGTAAAGCCAGCTAGGGATGCTGCAATTAAAGCAAAGATGGAAGTTGAAGCATCATCAGTTCCGGAATCTCCACTACATCTTGATAATGAATGGGAAATAAGTGTTGTTGATGATAACGAGCCGGAAGGTACGGAGGCCAAAACTCCAGACGCTCTTCCAGAAGGTCTTGTTCGCGAGCTTCCCAGTGCAGATGAGTTCCAAAAACCACCTACTGAAGCTACAGAGGGTACAATTGACGACCTAGAAGATCTTCGAAAGCAACTTGAGGCCCTAAATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0008641 GO:0009987 GO:0016874 GO:0016877 GO:0019538 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0070647 GO:0071566 GO:0071569 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ThiF

Protein Analysis

426

Amino Acids

46.79

Weight (kDa)

4.74

Isoelectric Point (pI)

39.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010013)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05350
fragaria_vesca	FvH4_5g08320 FvH4_5g08320 FvH4_5g08320 FvH4_5g08320
malus_domestica	MD06G1141900.v1.1 MD14G1157100.v1.1
prunus_persica	Prupe.5G151100_v2.0.a1 Prupe.5G151100_v2.0.a1
pyrus_communis	pycom06g13160 pycom14g13060
rosa_chinensis	RchiOBHm_Chr7g0190201
rosa_laevigata	RLG00000004554
rosa_multiflora	Rmu_sc0004886.1_g000018
rosa_roxburghii	Rroxscaffold_3G00264790
rosa_rugosa	Rorug06G0502900
rosa_samantha	Rh7AG108200 Rh7BG110800 Rh7CG113200 Rh7DG111600
rosa_wichuraiana	Rw7G009380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	1170
AccIII	TCCGGA	1 cut(s)	1057
AclWI	GGATC	1 cut(s)	56
AcsI	RAATTY	1 cut(s)	1270
AcuI	CTGAAG	3 cut(s)	35, 65, 1230
AfaI	GTAC	6 cut(s)	432, 579, 772, 989, 1126, 1225
AfiI	CCNNNNNNNGG	3 cut(s)	892, 893, 928
AflII	CTTAAG	1 cut(s)	776
AgsI	TTSAA	3 cut(s)	150, 215, 1043
AjnI	CCWGG	1 cut(s)	706
AleI	CACNNNNGTG	1 cut(s)	494
AluBI	AGCT	8 cut(s)	91, 302, 368, 474, 585, 1007, 1174, 1214
AluI	AGCT	8 cut(s)	91, 302, 368, 474, 585, 1007, 1174, 1214
Alw21I	GWGCWC	1 cut(s)	736
Alw26I	GTCTC	1 cut(s)	886
Alw44I	GTGCAC	1 cut(s)	732
AlwI	GGATC	1 cut(s)	56
AlwNI	CAGNNNCTG	2 cut(s)	425, 700
Aor13HI	TCCGGA	1 cut(s)	1057
AoxI	GGCC	3 cut(s)	685, 1131, 1263
ApaLI	GTGCAC	1 cut(s)	732
ApeKI	GCWGC	4 cut(s)	299, 425, 797, 1016
ApoI	RAATTY	1 cut(s)	1270
Asp700I	GAANNNNTTC	1 cut(s)	1245
AspS9I	GGNCC	3 cut(s)	134, 571, 1264
AsuC2I	CCSGG	1 cut(s)	132
AsuHPI	GGTGA	1 cut(s)	722
AsuII	TTCGAA	1 cut(s)	1249
AvaII	GGWCC	2 cut(s)	134, 571
BaeGI	GKGCMC	1 cut(s)	736
Bbv12I	GWGCWC	1 cut(s)	736
BbvI	GCAGC	4 cut(s)	311, 412, 784, 1003
BccI	CCATC	4 cut(s)	89, 214, 646, 1027
BceAI	ACGGC	1 cut(s)	992
BciT130I	CCWGG	1 cut(s)	708
BcnI	CCSGG	1 cut(s)	132
BcoDI	GTCTC	1 cut(s)	886
BfaI	CTAG	4 cut(s)	522, 839, 1008, 1238
BfmI	CTRYAG	1 cut(s)	1215
BfrI	CTTAAG	1 cut(s)	776
BglII	AGATCT	1 cut(s)	1243
BisI	GCNGC	4 cut(s)	300, 426, 798, 1017
BlsI	GCNGC	4 cut(s)	301, 427, 799, 1018
BmcAI	AGTACT	1 cut(s)	989
Bme1390I	CCNGG	2 cut(s)	132, 708
Bme18I	GGWCC	2 cut(s)	134, 571
BmgT120I	GGNCC	3 cut(s)	134, 571, 1264
BmrFI	CCNGG	2 cut(s)	132, 708
BmrI	ACTGGG	1 cut(s)	1173
BmsI	GCATC	7 cut(s)	297, 412, 664, 761, 809, 1003, 1055
BmuI	ACTGGG	1 cut(s)	1173
BpmI	CTGGAG	2 cut(s)	777, 1125
Bpu14I	TTCGAA	1 cut(s)	1249
BpuEI	CTTGAG	1 cut(s)	488
BpuMI	CCSGG	1 cut(s)	132
Bsa29I	ATCGAT	1 cut(s)	84
BsaBI	GATNNNNATC	1 cut(s)	186
BsaJI	CCNNGG	1 cut(s)	171
BsaWI	WCCGGW	1 cut(s)	1057
Bsc4I	CCNNNNNNNGG	3 cut(s)	892, 893, 928
Bse1I	ACTGG	1 cut(s)	1179
Bse3DI	GCAATG	1 cut(s)	637
Bse8I	GATNNNNATC	1 cut(s)	186
BseAI	TCCGGA	1 cut(s)	1057
BseBI	CCWGG	1 cut(s)	708
BseCI	ATCGAT	1 cut(s)	84
BseDI	CCNNGG	1 cut(s)	171
BseGI	GGATG	5 cut(s)	225, 657, 679, 769, 1018
BseJI	GATNNNNATC	1 cut(s)	186
BseLI	CCNNNNNNNGG	3 cut(s)	892, 893, 928
BseMI	GCAATG	1 cut(s)	637
BseMII	CTCAG	4 cut(s)	273, 294, 660, 962
BseNI	ACTGG	1 cut(s)	1179
BseSI	GKGCMC	1 cut(s)	736
BseXI	GCAGC	4 cut(s)	311, 412, 784, 1003
BseYI	CCCAGC	1 cut(s)	830
BsgI	GTGCAG	1 cut(s)	1203
Bsh1236I	CGCG	1 cut(s)	1170
BshFI	GGCC	3 cut(s)	687, 1133, 1265
BshVI	ATCGAT	1 cut(s)	84
BsiHKAI	GWGCWC	1 cut(s)	736
BsiSI	CCGG	3 cut(s)	132, 1058, 1118
BslFI	GGGAC	1 cut(s)	266
BslI	CCNNNNNNNGG	3 cut(s)	892, 893, 928
BsmAI	GTCTC	1 cut(s)	886
BsmBI	CGTCTC	1 cut(s)	886
BsmFI	GGGAC	1 cut(s)	266
BsnI	GGCC	3 cut(s)	687, 1133, 1265
Bsp119I	TTCGAA	1 cut(s)	1249
Bsp1286I	GDGCHC	1 cut(s)	736
Bsp13I	TCCGGA	1 cut(s)	1057
Bsp1407I	TGTACA	1 cut(s)	430
Bsp143I	GATC	2 cut(s)	61, 1243
Bsp68I	TCGCGA	1 cut(s)	1170
BspANI	GGCC	3 cut(s)	687, 1133, 1265
BspCNI	CTCAG	4 cut(s)	272, 295, 661, 961
BspDI	ATCGAT	1 cut(s)	84
BspEI	TCCGGA	1 cut(s)	1057
BspFNI	CGCG	1 cut(s)	1170
BspPI	GGATC	1 cut(s)	56
BspQI	GCTCTTC	1 cut(s)	1155
BspT104I	TTCGAA	1 cut(s)	1249
BspTI	CTTAAG	1 cut(s)	776
BsrDI	GCAATG	1 cut(s)	637
BsrGI	TGTACA	1 cut(s)	430
BsrI	ACTGG	1 cut(s)	1179
BssECI	CCNNGG	1 cut(s)	171
BssMI	GATC	2 cut(s)	61, 1243
Bst2UI	CCWGG	1 cut(s)	708
Bst4CI	ACNGT	2 cut(s)	197, 496
Bst6I	CTCTTC	1 cut(s)	1155
BstAFI	CTTAAG	1 cut(s)	776
BstAUI	TGTACA	1 cut(s)	430
BstBI	TTCGAA	1 cut(s)	1249
BstC8I	GCNNGC	3 cut(s)	628, 1005, 1172
BstDEI	CTNAG	5 cut(s)	259, 303, 581, 669, 948
BstF5I	GGATG	5 cut(s)	225, 657, 679, 769, 1018
BstFNI	CGCG	1 cut(s)	1170
BstKTI	GATC	2 cut(s)	64, 1246
BstMAI	GTCTC	1 cut(s)	886
BstMBI	GATC	2 cut(s)	61, 1243
BstMWI	GCNNNNNNNGC	7 cut(s)	97, 117, 611, 725, 1000, 1013, 1025
BstNI	CCWGG	1 cut(s)	708
BstNSI	RCATGY	1 cut(s)	732
BstSCI	CCNGG	2 cut(s)	130, 706
BstSFI	CTRYAG	1 cut(s)	1215
BstSLI	GKGCMC	1 cut(s)	736
BstUI	CGCG	1 cut(s)	1170
BstV1I	GCAGC	4 cut(s)	311, 412, 784, 1003
BstX2I	RGATCY	1 cut(s)	1243
BstYI	RGATCY	1 cut(s)	1243
Bsu15I	ATCGAT	1 cut(s)	84
BsuRI	GGCC	3 cut(s)	687, 1133, 1265
BsuTUI	ATCGAT	1 cut(s)	84
BtsCI	GGATG	5 cut(s)	225, 657, 679, 769, 1018
BtsI	GCAGTG	1 cut(s)	568
BtsIMutI	CAGTG	4 cut(s)	479, 568, 956, 1186
BtuMI	TCGCGA	1 cut(s)	1170
Cac8I	GCNNGC	3 cut(s)	628, 1005, 1172
CaiI	CAGNNNCTG	2 cut(s)	425, 700
Cfr13I	GGNCC	3 cut(s)	134, 571, 1264
ClaI	ATCGAT	1 cut(s)	84
CseI	GACGC	1 cut(s)	1154
Csp6I	GTAC	6 cut(s)	431, 578, 771, 988, 1125, 1224
CviAII	CATG	4 cut(s)	74, 373, 648, 729
CviQI	GTAC	6 cut(s)	431, 578, 771, 988, 1125, 1224
DdeI	CTNAG	5 cut(s)	259, 303, 581, 669, 948
DpnI	GATC	2 cut(s)	63, 1245
DpnII	GATC	2 cut(s)	61, 1243
DraI	TTTAAA	1 cut(s)	528
Eam1104I	CTCTTC	1 cut(s)	1155
EarI	CTCTTC	1 cut(s)	1155
Eco47I	GGWCC	2 cut(s)	134, 571
Eco57I	CTGAAG	3 cut(s)	35, 65, 1230
EcoO109I	RGGNCCY	1 cut(s)	1264
EcoRII	CCWGG	1 cut(s)	706
Esp3I	CGTCTC	1 cut(s)	886
FaeI	CATG	4 cut(s)	77, 376, 651, 732
FaqI	GGGAC	1 cut(s)	266
FatI	CATG	4 cut(s)	73, 372, 647, 728
Fnu4HI	GCNGC	4 cut(s)	300, 426, 798, 1017
FokI	GGATG	5 cut(s)	232, 664, 686, 776, 1025
Fsp4HI	GCNGC	4 cut(s)	300, 426, 798, 1017
FspBI	CTAG	4 cut(s)	522, 839, 1008, 1238
GluI	GCNGC	4 cut(s)	300, 426, 798, 1017
GsaI	CCCAGC	1 cut(s)	834
GsuI	CTGGAG	2 cut(s)	777, 1125
HaeIII	GGCC	3 cut(s)	687, 1133, 1265
HapII	CCGG	3 cut(s)	132, 1058, 1118
HgaI	GACGC	1 cut(s)	1154
Hin1II	CATG	4 cut(s)	77, 376, 651, 732
HinfI	GANTC	5 cut(s)	38, 640, 656, 703, 1061
HpaII	CCGG	3 cut(s)	132, 1058, 1118
HphI	GGTGA	1 cut(s)	722
Hpy166II	GTNNAC	3 cut(s)	571, 734, 773
Hpy188I	TCNGA	5 cut(s)	61, 445, 645, 670, 875
Hpy188III	TCNNGA	9 cut(s)	455, 756, 971, 1058, 1076, 1142, 1154, 1169, 1275
Hpy8I	GTNNAC	3 cut(s)	571, 734, 773
HpyAV	CCTTC	7 cut(s)	10, 75, 151, 551, 779, 1115, 1151
HpyCH4III	ACNGT	2 cut(s)	197, 496
HpyCH4IV	ACGT	2 cut(s)	769, 879
HpyCH4V	TGCA	8 cut(s)	125, 499, 630, 728, 734, 800, 1019, 1184
HpyF10VI	GCNNNNNNNGC	7 cut(s)	97, 117, 611, 725, 1000, 1013, 1025
HpyF3I	CTNAG	5 cut(s)	259, 303, 581, 669, 948
HpySE526I	ACGT	2 cut(s)	769, 879
Hsp92II	CATG	4 cut(s)	77, 376, 651, 732
Kpn2I	TCCGGA	1 cut(s)	1057
Kzo9I	GATC	2 cut(s)	61, 1243
LguI	GCTCTTC	1 cut(s)	1155
LmnI	GCTCC	1 cut(s)	82
Lsp1109I	GCAGC	4 cut(s)	311, 412, 784, 1003
LweI	GCATC	7 cut(s)	297, 412, 664, 761, 809, 1003, 1055
MaeI	CTAG	4 cut(s)	522, 839, 1008, 1238
MaeII	ACGT	2 cut(s)	769, 879
MalI	GATC	2 cut(s)	63, 1245
MboI	GATC	2 cut(s)	61, 1243
MboII	GAAGA	5 cut(s)	58, 910, 1142, 1238, 1253
MfeI	CAATTG	2 cut(s)	95, 1227
MflI	RGATCY	1 cut(s)	1243
MhlI	GDGCHC	1 cut(s)	736
MluCI	AATT	7 cut(s)	95, 595, 901, 958, 1020, 1227, 1270
MlyI	GAGTC	1 cut(s)	665
MmeI	TCCRAC	1 cut(s)	253
MnlI	CCTC	7 cut(s)	44, 166, 664, 957, 1123, 1213, 1255
MroI	TCCGGA	1 cut(s)	1057
MroXI	GAANNNNTTC	1 cut(s)	1245
MseI	TTAA	5 cut(s)	527, 618, 777, 909, 1023
MslI	CAYNNNNRTG	1 cut(s)	494
MspA1I	CMGCKG	1 cut(s)	302
MspCI	CTTAAG	1 cut(s)	776
MspI	CCGG	3 cut(s)	132, 1058, 1118
MspR9I	CCNGG	2 cut(s)	132, 708
MunI	CAATTG	2 cut(s)	95, 1227
MvaI	CCWGG	1 cut(s)	708
MvnI	CGCG	1 cut(s)	1170
MwoI	GCNNNNNNNGC	7 cut(s)	97, 117, 611, 725, 1000, 1013, 1025
NciI	CCSGG	1 cut(s)	132
NdeII	GATC	2 cut(s)	61, 1243
NlaIII	CATG	4 cut(s)	77, 376, 651, 732
NmeAIII	GCCGAG	1 cut(s)	196
NruI	TCGCGA	1 cut(s)	1170
NspI	RCATGY	1 cut(s)	732
NspV	TTCGAA	1 cut(s)	1249
OliI	CACNNNNGTG	1 cut(s)	494
PciSI	GCTCTTC	1 cut(s)	1155
PdmI	GAANNNNTTC	1 cut(s)	1245
PfeI	GAWTC	4 cut(s)	38, 640, 703, 1061
PfoI	TCCNGGA	1 cut(s)	130
PkrI	GCNGC	4 cut(s)	301, 427, 799, 1018
PleI	GAGTC	1 cut(s)	664
PpsI	GAGTC	1 cut(s)	664
Psp6I	CCWGG	1 cut(s)	706
PspFI	CCCAGC	1 cut(s)	830
PspGI	CCWGG	1 cut(s)	706
PspPI	GGNCC	3 cut(s)	134, 571, 1264
PstNI	CAGNNNCTG	2 cut(s)	425, 700
PsuI	RGATCY	1 cut(s)	1243
PvuII	CAGCTG	1 cut(s)	302
RruI	TCGCGA	1 cut(s)	1170
RsaI	GTAC	6 cut(s)	432, 579, 772, 989, 1126, 1225
RsaNI	GTAC	6 cut(s)	431, 578, 771, 988, 1125, 1224
RseI	CAYNNNNRTG	1 cut(s)	494
SapI	GCTCTTC	1 cut(s)	1155
SaqAI	TTAA	5 cut(s)	527, 618, 777, 909, 1023
SatI	GCNGC	4 cut(s)	300, 426, 798, 1017
Sau3AI	GATC	2 cut(s)	61, 1243
Sau96I	GGNCC	3 cut(s)	134, 571, 1264
ScaI	AGTACT	1 cut(s)	989
SchI	GAGTC	1 cut(s)	665
ScrFI	CCNGG	2 cut(s)	132, 708
SduI	GDGCHC	1 cut(s)	736
SfaNI	GCATC	7 cut(s)	297, 412, 664, 761, 809, 1003, 1055
SfcI	CTRYAG	1 cut(s)	1215
SfuI	TTCGAA	1 cut(s)	1249
SinI	GGWCC	2 cut(s)	134, 571
SmiMI	CAYNNNNRTG	1 cut(s)	494
SmlI	CTYRAG	3 cut(s)	467, 776, 1259
SmoI	CTYRAG	3 cut(s)	467, 776, 1259
Sse9I	AATT	7 cut(s)	95, 595, 901, 958, 1020, 1227, 1270
SspMI	CTAG	4 cut(s)	522, 839, 1008, 1238
StyD4I	CCNGG	2 cut(s)	130, 706
TaaI	ACNGT	2 cut(s)	197, 496
TaiI	ACGT	2 cut(s)	772, 882
TaqI	TCGA	4 cut(s)	36, 84, 391, 1249
TasI	AATT	7 cut(s)	95, 595, 901, 958, 1020, 1227, 1270
TatI	WGTACW	3 cut(s)	430, 577, 987
TfiI	GAWTC	4 cut(s)	38, 640, 703, 1061
Tru1I	TTAA	5 cut(s)	527, 618, 777, 909, 1023
Tru9I	TTAA	5 cut(s)	527, 618, 777, 909, 1023
TscAI	CASTG	4 cut(s)	486, 568, 956, 1186
TseI	GCWGC	4 cut(s)	299, 425, 797, 1016
TspDTI	ATGAA	7 cut(s)	255, 389, 615, 648, 780, 950, 1098
TspGWI	ACGGA	1 cut(s)	1142
TspRI	CASTG	4 cut(s)	486, 568, 956, 1186
Vha464I	CTTAAG	1 cut(s)	776
VneI	GTGCAC	1 cut(s)	732
VpaK11BI	GGWCC	2 cut(s)	134, 571
XapI	RAATTY	1 cut(s)	1270
XceI	RCATGY	1 cut(s)	732
XmnI	GAANNNNTTC	1 cut(s)	1245
XspI	CTAG	4 cut(s)	522, 839, 1008, 1238
ZrmI	AGTACT	1 cut(s)	989

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.