Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004886.1

Orthogroup ID

OG0010013

Physical Location & Seq

Genomic Coordinates Forward (+)

98891 .. 102901

Gene Structure 4011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004886.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

atggaggtggaattgaaggagatgcttaacgacctcgattcgctgaagagatcgctcaccgatccttcgcagagcgctccaatcgataaactacaactgcgtgttgaacgccttaccagtcttgcaaaaactggacctgttcggcgatccaaagttcaggatatgagcgctgaggtggtagatagcaatccttacagtaggcttatggcacttcagaggatgggcattgtgaaaaactatgaaagaataagggagttctccgtagccatagttggagtaggtggcgtaggaagtgtagcagctgagatgctaacaagatgtggtattggtcgccttctattgtacgattatgataaagtagagctagctaacatgaataggttattctttcgtccagagcagagtggtatgacaaaaacagatgctgctgtacagaccctttcagacataaatcctgatgttgtgcttgagagctatacactgaacatcacaacagtgcaaggttttgaaacctttacgtccagtttgaaaaataaatcattttgcccagataaggaaggcagtggaatagaccttgtgttaagctgtgttgataattacgaagctcgaatggctgttaatcaggcttgcaatgaactgaatcagacatggatggagtctggcgtttctgaggatgctgtttcaggtcatattcagttgcttatacctggtgaaactgcctgttttgcatgtgccccacctttggttgtagcatctggaatagatgaacgcacacttaagcgagaaggggtttgtgctgcatctttacctactactatgggagttgttgctgggctgctagttcagaatacactcaaatacttgctgaactttggaaatgtctccccatacttgggatataattctcttaaagacttcttccccaccatggaaatgaggccaaatcctcagtgttcaaattttgcttgtctggaacgtcagaaagaatacttgcttgcaaagccggctagggatgctgctagtaaagcaaagatggaatctgacgcatcatcatctgtaatagaagctccactccatcttgataatgaatgggaaataagcgttgtcgatgatactgagccagataggatagaggccaaacgttcagatactcttccagaaggtcttgttcgggagcttcccagtgcggatgacttccaaaaaccacctgctgaagccacagatactactgttgatgacctagaagagcttcggaaacaacttgaggccctaaattcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0008641 GO:0009987 GO:0016874 GO:0016877 GO:0019538 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0070647 GO:0071566 GO:0071569 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ThiF

Protein Analysis

426

Amino Acids

46.93

Weight (kDa)

4.7

Isoelectric Point (pI)

42.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010013)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05350
fragaria_vesca	FvH4_5g08320 FvH4_5g08320 FvH4_5g08320 FvH4_5g08320
malus_domestica	MD06G1141900.v1.1 MD14G1157100.v1.1
prunus_persica	Prupe.5G151100_v2.0.a1 Prupe.5G151100_v2.0.a1
pyrus_communis	pycom06g13160 pycom14g13060
rosa_chinensis	RchiOBHm_Chr7g0190201
rosa_laevigata	RLG00000004554
rosa_multiflora	Rmu_sc0004886.1_g000018
rosa_roxburghii	Rroxscaffold_3G00264790
rosa_rugosa	Rorug06G0502900
rosa_samantha	Rh7AG108200 Rh7BG110800 Rh7CG113200 Rh7DG111600
rosa_wichuraiana	Rw7G009380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1216
Acc36I	ACCTGC	1 cut(s)	1216
AciI	CCGC	1 cut(s)	1187
AclI	AACGTT	1 cut(s)	1141
AclWI	GGATC	2 cut(s)	56, 141
AcsI	RAATTY	2 cut(s)	958, 1273
AcuI	CTGAAG	3 cut(s)	65, 197, 1233
AfaI	GTAC	2 cut(s)	344, 432
AfeI	AGCGCT	2 cut(s)	76, 169
AfiI	CCNNNNNNNGG	5 cut(s)	553, 742, 892, 893, 928
AflII	CTTAAG	1 cut(s)	776
AgsI	TTSAA	5 cut(s)	16, 107, 509, 529, 957
AjnI	CCWGG	1 cut(s)	706
AleI	CACNNNNGTG	1 cut(s)	494
AluBI	AGCT	9 cut(s)	302, 364, 368, 474, 585, 605, 1067, 1177, 1249
AluI	AGCT	9 cut(s)	302, 364, 368, 474, 585, 605, 1067, 1177, 1249
Alw26I	GTCTC	1 cut(s)	886
AlwI	GGATC	2 cut(s)	56, 141
AlwNI	CAGNNNCTG	1 cut(s)	425
Aor51HI	AGCGCT	2 cut(s)	76, 169
AoxI	GGCC	3 cut(s)	938, 1134, 1266
ApeKI	GCWGC	5 cut(s)	299, 425, 797, 835, 1016
ApoI	RAATTY	2 cut(s)	958, 1273
Asp700I	GAANNNNTTC	1 cut(s)	1248
AspLEI	GCGC	2 cut(s)	77, 170
AspS9I	GGNCC	2 cut(s)	134, 1267
AsuHPI	GGTGA	2 cut(s)	49, 722
AsuNHI	GCTAGC	1 cut(s)	364
AvaII	GGWCC	1 cut(s)	134
BaeGI	GKGCMC	1 cut(s)	736
BaeI	ACNNNNGTAYC	2 cut(s)	1215, 1248
BbvCI	CCTCAGC	1 cut(s)	171
BbvI	GCAGC	5 cut(s)	311, 412, 784, 822, 1003
BccI	CCATC	4 cut(s)	214, 646, 1027, 1083
BciT130I	CCWGG	1 cut(s)	708
BcoDI	GTCTC	1 cut(s)	886
BfaI	CTAG	5 cut(s)	365, 839, 1008, 1020, 1241
BfoI	RGCGCY	2 cut(s)	78, 171
BfrI	CTTAAG	1 cut(s)	776
BfuAI	ACCTGC	1 cut(s)	1216
BisI	GCNGC	5 cut(s)	300, 426, 798, 836, 1017
BlsI	GCNGC	5 cut(s)	301, 427, 799, 837, 1018
Bme1390I	CCNGG	1 cut(s)	708
Bme18I	GGWCC	1 cut(s)	134
BmgT120I	GGNCC	2 cut(s)	134, 1267
BmrFI	CCNGG	1 cut(s)	708
BmrI	ACTGGG	1 cut(s)	1176
BmsI	GCATC	8 cut(s)	12, 297, 412, 664, 761, 809, 1003, 1055
BmtI	GCTAGC	1 cut(s)	368
BmuI	ACTGGG	1 cut(s)	1176
Bpu10I	CCTNAGC	1 cut(s)	171
BpuEI	CTTGAG	1 cut(s)	488
Bsa29I	ATCGAT	1 cut(s)	84
BsaBI	GATNNNNATC	1 cut(s)	186
BsaJI	CCNNGG	1 cut(s)	927
Bsc4I	CCNNNNNNNGG	5 cut(s)	553, 742, 892, 893, 928
Bse118I	RCCGGY	1 cut(s)	1003
Bse1I	ACTGG	4 cut(s)	117, 136, 522, 1182
Bse3DI	GCAATG	1 cut(s)	637
Bse8I	GATNNNNATC	1 cut(s)	186
BseBI	CCWGG	1 cut(s)	708
BseCI	ATCGAT	1 cut(s)	84
BseDI	CCNNGG	1 cut(s)	927
BseGI	GGATG	5 cut(s)	225, 657, 679, 1018, 1195
BseJI	GATNNNNATC	1 cut(s)	186
BseLI	CCNNNNNNNGG	5 cut(s)	553, 742, 892, 893, 928
BseMI	GCAATG	1 cut(s)	637
BseMII	CTCAG	5 cut(s)	162, 294, 660, 962, 1107
BseNI	ACTGG	4 cut(s)	117, 136, 522, 1182
BseSI	GKGCMC	1 cut(s)	736
BseXI	GCAGC	5 cut(s)	311, 412, 784, 822, 1003
BseYI	CCCAGC	1 cut(s)	830
BshFI	GGCC	3 cut(s)	940, 1136, 1268
BshVI	ATCGAT	1 cut(s)	84
BsiSI	CCGG	1 cut(s)	1004
BslI	CCNNNNNNNGG	5 cut(s)	553, 742, 892, 893, 928
BsmAI	GTCTC	1 cut(s)	886
BsnI	GGCC	3 cut(s)	940, 1136, 1268
Bsp1286I	GDGCHC	1 cut(s)	736
Bsp1407I	TGTACA	1 cut(s)	430
Bsp143I	GATC	3 cut(s)	50, 61, 146
Bsp19I	CCATGG	1 cut(s)	927
BspACI	CCGC	1 cut(s)	1187
BspANI	GGCC	3 cut(s)	940, 1136, 1268
BspCNI	CTCAG	5 cut(s)	163, 295, 661, 961, 1108
BspDI	ATCGAT	1 cut(s)	84
BspMI	ACCTGC	1 cut(s)	1216
BspOI	GCTAGC	1 cut(s)	368
BspPI	GGATC	2 cut(s)	56, 141
BspQI	GCTCTTC	1 cut(s)	1239
BspTI	CTTAAG	1 cut(s)	776
BsrDI	GCAATG	1 cut(s)	637
BsrFI	RCCGGY	1 cut(s)	1003
BsrGI	TGTACA	1 cut(s)	430
BsrI	ACTGG	4 cut(s)	117, 136, 522, 1182
BssAI	RCCGGY	1 cut(s)	1003
BssECI	CCNNGG	1 cut(s)	927
BssMI	GATC	3 cut(s)	50, 61, 146
BssT1I	CCWWGG	1 cut(s)	927
Bst2UI	CCWGG	1 cut(s)	708
Bst4CI	ACNGT	3 cut(s)	197, 496, 1231
Bst6I	CTCTTC	3 cut(s)	41, 1158, 1239
BstAFI	CTTAAG	1 cut(s)	776
BstAUI	TGTACA	1 cut(s)	430
BstC8I	GCNNGC	4 cut(s)	366, 628, 996, 1005
BstDEI	CTNAG	5 cut(s)	171, 303, 669, 948, 1116
BstDSI	CCRYGG	1 cut(s)	927
BstF5I	GGATG	5 cut(s)	225, 657, 679, 1018, 1195
BstH2I	RGCGCY	2 cut(s)	78, 171
BstHHI	GCGC	2 cut(s)	77, 170
BstKTI	GATC	3 cut(s)	53, 64, 149
BstMAI	GTCTC	1 cut(s)	886
BstMBI	GATC	3 cut(s)	50, 61, 146
BstMWI	GCNNNNNNNGC	6 cut(s)	611, 725, 1000, 1004, 1013, 1025
BstNI	CCWGG	1 cut(s)	708
BstNSI	RCATGY	1 cut(s)	732
BstSCI	CCNGG	1 cut(s)	706
BstSLI	GKGCMC	1 cut(s)	736
BstV1I	GCAGC	5 cut(s)	311, 412, 784, 822, 1003
Bsu15I	ATCGAT	1 cut(s)	84
BsuRI	GGCC	3 cut(s)	940, 1136, 1268
BsuTUI	ATCGAT	1 cut(s)	84
BtgI	CCRYGG	1 cut(s)	927
BtsCI	GGATG	5 cut(s)	225, 657, 679, 1018, 1195
BtsI	GCAGTG	1 cut(s)	568
BtsIMutI	CAGTG	5 cut(s)	479, 501, 568, 956, 1189
BveI	ACCTGC	1 cut(s)	1216
Cac8I	GCNNGC	4 cut(s)	366, 628, 996, 1005
CaiI	CAGNNNCTG	1 cut(s)	425
CfoI	GCGC	2 cut(s)	77, 170
Cfr10I	RCCGGY	1 cut(s)	1003
Cfr13I	GGNCC	2 cut(s)	134, 1267
ClaI	ATCGAT	1 cut(s)	84
CseI	GACGC	1 cut(s)	1052
CsiI	ACCWGGT	1 cut(s)	706
Csp6I	GTAC	2 cut(s)	343, 431
CviAII	CATG	4 cut(s)	373, 648, 729, 928
CviQI	GTAC	2 cut(s)	343, 431
DdeI	CTNAG	5 cut(s)	171, 303, 669, 948, 1116
DpnI	GATC	3 cut(s)	52, 63, 148
DpnII	GATC	3 cut(s)	50, 61, 146
Eam1104I	CTCTTC	3 cut(s)	41, 1158, 1239
EarI	CTCTTC	3 cut(s)	41, 1158, 1239
Eco130I	CCWWGG	1 cut(s)	927
Eco47I	GGWCC	1 cut(s)	134
Eco47III	AGCGCT	2 cut(s)	76, 169
Eco57I	CTGAAG	3 cut(s)	65, 197, 1233
EcoO109I	RGGNCCY	1 cut(s)	1267
EcoRII	CCWGG	1 cut(s)	706
EcoT14I	CCWWGG	1 cut(s)	927
ErhI	CCWWGG	1 cut(s)	927
FaeI	CATG	4 cut(s)	376, 651, 732, 931
FatI	CATG	4 cut(s)	372, 647, 728, 927
Fnu4HI	GCNGC	5 cut(s)	300, 426, 798, 836, 1017
FokI	GGATG	5 cut(s)	232, 664, 686, 1025, 1202
Fsp4HI	GCNGC	5 cut(s)	300, 426, 798, 836, 1017
FspBI	CTAG	5 cut(s)	365, 839, 1008, 1020, 1241
GlaI	GCGC	2 cut(s)	76, 169
GluI	GCNGC	5 cut(s)	300, 426, 798, 836, 1017
GsaI	CCCAGC	1 cut(s)	834
HaeII	RGCGCY	2 cut(s)	78, 171
HaeIII	GGCC	3 cut(s)	940, 1136, 1268
HapII	CCGG	1 cut(s)	1004
HgaI	GACGC	1 cut(s)	1052
HhaI	GCGC	2 cut(s)	77, 170
Hin1II	CATG	4 cut(s)	376, 651, 732, 931
Hin6I	GCGC	2 cut(s)	75, 168
HinP1I	GCGC	2 cut(s)	75, 168
HinfI	GANTC	4 cut(s)	38, 640, 656, 1037
HpaII	CCGG	1 cut(s)	1004
HphI	GGTGA	2 cut(s)	49, 722
Hpy188I	TCNGA	9 cut(s)	216, 445, 645, 670, 846, 981, 1042, 1147, 1254
Hpy188III	TCNNGA	8 cut(s)	158, 395, 455, 756, 971, 1079, 1157, 1172
HpyAV	CCTTC	6 cut(s)	10, 75, 344, 551, 779, 1154
HpyCH4III	ACNGT	3 cut(s)	197, 496, 1231
HpyCH4IV	ACGT	3 cut(s)	518, 976, 1141
HpyCH4V	TGCA	6 cut(s)	125, 499, 630, 728, 800, 998
HpyF10VI	GCNNNNNNNGC	6 cut(s)	611, 725, 1000, 1004, 1013, 1025
HpyF3I	CTNAG	5 cut(s)	171, 303, 669, 948, 1116
HpySE526I	ACGT	3 cut(s)	518, 976, 1141
Hsp92II	CATG	4 cut(s)	376, 651, 732, 931
HspAI	GCGC	2 cut(s)	75, 168
KroI	GCCGGC	1 cut(s)	1003
KroNI	GCCGGC	1 cut(s)	1005
Kzo9I	GATC	3 cut(s)	50, 61, 146
LguI	GCTCTTC	1 cut(s)	1239
LmnI	GCTCC	3 cut(s)	82, 1072, 1174
Lsp1109I	GCAGC	5 cut(s)	311, 412, 784, 822, 1003
LweI	GCATC	8 cut(s)	12, 297, 412, 664, 761, 809, 1003, 1055
MabI	ACCWGGT	1 cut(s)	706
MaeI	CTAG	5 cut(s)	365, 839, 1008, 1020, 1241
MaeII	ACGT	3 cut(s)	518, 976, 1141
MalI	GATC	3 cut(s)	52, 63, 148
MboI	GATC	3 cut(s)	50, 61, 146
MboII	GAAGA	4 cut(s)	58, 910, 1145, 1256
MhlI	GDGCHC	1 cut(s)	736
MluCI	AATT	5 cut(s)	11, 595, 901, 958, 1273
MlyI	GAGTC	1 cut(s)	665
MmeI	TCCRAC	1 cut(s)	253
MnlI	CCTC	8 cut(s)	44, 166, 210, 664, 930, 957, 1126, 1258
MroNI	GCCGGC	1 cut(s)	1003
MroXI	GAANNNNTTC	1 cut(s)	1248
MseI	TTAA	6 cut(s)	27, 581, 618, 777, 909, 1279
MslI	CAYNNNNRTG	2 cut(s)	494, 932
MspA1I	CMGCKG	1 cut(s)	302
MspCI	CTTAAG	1 cut(s)	776
MspI	CCGG	1 cut(s)	1004
MspR9I	CCNGG	1 cut(s)	708
MvaI	CCWGG	1 cut(s)	708
MwoI	GCNNNNNNNGC	6 cut(s)	611, 725, 1000, 1004, 1013, 1025
NaeI	GCCGGC	1 cut(s)	1005
NcoI	CCATGG	1 cut(s)	927
NdeII	GATC	3 cut(s)	50, 61, 146
NgoMIV	GCCGGC	1 cut(s)	1003
NheI	GCTAGC	1 cut(s)	364
NlaIII	CATG	4 cut(s)	376, 651, 732, 931
NspI	RCATGY	1 cut(s)	732
OliI	CACNNNNGTG	1 cut(s)	494
PaqCI	CACCTGC	1 cut(s)	1216
PciSI	GCTCTTC	1 cut(s)	1239
PdiI	GCCGGC	1 cut(s)	1005
PdmI	GAANNNNTTC	1 cut(s)	1248
PfeI	GAWTC	3 cut(s)	38, 640, 1037
PkrI	GCNGC	5 cut(s)	301, 427, 799, 837, 1018
PleI	GAGTC	1 cut(s)	664
PpsI	GAGTC	1 cut(s)	664
Psp1406I	AACGTT	1 cut(s)	1141
Psp6I	CCWGG	1 cut(s)	706
PspFI	CCCAGC	1 cut(s)	830
PspGI	CCWGG	1 cut(s)	706
PspPI	GGNCC	2 cut(s)	134, 1267
PstNI	CAGNNNCTG	1 cut(s)	425
PvuII	CAGCTG	1 cut(s)	302
RsaI	GTAC	2 cut(s)	344, 432
RsaNI	GTAC	2 cut(s)	343, 431
RseI	CAYNNNNRTG	2 cut(s)	494, 932
SapI	GCTCTTC	1 cut(s)	1239
SaqAI	TTAA	6 cut(s)	27, 581, 618, 777, 909, 1279
SatI	GCNGC	5 cut(s)	300, 426, 798, 836, 1017
Sau3AI	GATC	3 cut(s)	50, 61, 146
Sau96I	GGNCC	2 cut(s)	134, 1267
SchI	GAGTC	1 cut(s)	665
ScrFI	CCNGG	1 cut(s)	708
SduI	GDGCHC	1 cut(s)	736
SexAI	ACCWGGT	1 cut(s)	706
SfaNI	GCATC	8 cut(s)	12, 297, 412, 664, 761, 809, 1003, 1055
SinI	GGWCC	1 cut(s)	134
SmiMI	CAYNNNNRTG	2 cut(s)	494, 932
SmlI	CTYRAG	3 cut(s)	467, 776, 1262
SmoI	CTYRAG	3 cut(s)	467, 776, 1262
Sse9I	AATT	5 cut(s)	11, 595, 901, 958, 1273
SsiI	CCGC	1 cut(s)	1187
SspMI	CTAG	5 cut(s)	365, 839, 1008, 1020, 1241
StyD4I	CCNGG	1 cut(s)	706
StyI	CCWWGG	1 cut(s)	927
TaaI	ACNGT	3 cut(s)	197, 496, 1231
TaiI	ACGT	3 cut(s)	521, 979, 1144
TaqI	TCGA	4 cut(s)	36, 84, 607, 1107
TasI	AATT	5 cut(s)	11, 595, 901, 958, 1273
TatI	WGTACW	1 cut(s)	430
TfiI	GAWTC	3 cut(s)	38, 640, 1037
Tru1I	TTAA	6 cut(s)	27, 581, 618, 777, 909, 1279
Tru9I	TTAA	6 cut(s)	27, 581, 618, 777, 909, 1279
TscAI	CASTG	5 cut(s)	486, 501, 568, 956, 1189
TseI	GCWGC	5 cut(s)	299, 425, 797, 835, 1016
TspDTI	ATGAA	5 cut(s)	255, 389, 648, 780, 1101
TspGWI	ACGGA	1 cut(s)	250
TspRI	CASTG	5 cut(s)	486, 501, 568, 956, 1189
Vha464I	CTTAAG	1 cut(s)	776
VpaK11BI	GGWCC	1 cut(s)	134
XapI	RAATTY	2 cut(s)	958, 1273
XceI	RCATGY	1 cut(s)	732
XmnI	GAANNNNTTC	1 cut(s)	1248
XspI	CTAG	5 cut(s)	365, 839, 1008, 1020, 1241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.