Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0010013

Physical Location & Seq

Genomic Coordinates Forward (+)

8763784 .. 8768280

Gene Structure 4497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG113200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGTGTTACATGTTATGGTGGCAGGATATGAGCGCTGAGGTGGTAGATAGCAATCCTTACAGTAGGCTTATGGCACTTCAGAGGATGGGCATTGTGAAAAACTATGAAAGAATAAGGGAGTTCTCCGTAGCCATAGTTGGAGTAGGTGGCGTAGGAAGTGTAGCAGCTGAGATGCTAACAAGATGTGGTATTGGTCGCCTTCTATTGTACGATTATGATAAAGTAGAGCTAGCTAACATGAATAGGTTATTCTTTCGTCCAGAGCAGAGTGGTATGACAAAAACAGATGCTGCAGTACAGACCCTTTCAGACATTAATCCTGATGTTGTGCTTGAGAGCTATACACTGAACATCACAACAGTGCAAGGTTTTGAAACCTTTATGTCCAGTTTGAAAAATAAATCATTTTGCCCAGATAAGGAAGGCAGTGGAGTAGACCTTGTGTTAAGCTGTGTTGATAATTACGAAGCTCGAATGGCTGTTAATCAGGCTTGCAATGAACTGAATCAGACATGGATGGAGTCTGGTGTTTCTGAGGATGCTGTTTCAGGTCATATTCAGTTGCTTATACCTGGTGAAACTGCCTGTTTTGCATGTGCCCCACCTTTGGTTGTAGCATCTGGAATAGATGAACGCACACTTAAGCGAGAAGGGGTTTGTGCTGCATCTTTACCTACTACTATGGGAGTTATTGCTGGGCTGCTAGTTCAGAATACACTCAAATACTTGCTGAACTTTGGAAATGTCTCCCCATACTTGGGATATAATTCTCTTAAAGACTTCTTCCCCACCATGGAAATGAGGCCAAATCCTCAGTGTTCAAATTTTGCTTGTCTGGAACGTCAGAAAGAATACTTGCTTGCAAAGCCGGCTAGGGATGCTGCTAGTAAAGCAAAGATGGAATCTGACGCATCATCATCTGTAATAGAAGCTCCACTCCATCTTGATAATGAATGGGAAATAAGCGTTGTCGATTATACTGAGCCAGATAGGATAGAGGCCAAACGTTCAGATACTCTTCCAGAAGGTCTTGTTCGGGAGCTTCCCAGTGCGGATGACTTCCAAAAACCACCTGCTGAAGCCACAGATACTACTGTTGATGACCTAGAAGAGCTTCGGAAACAACTTGAGGCCCTAAATTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0008641 GO:0009987 GO:0016874 GO:0016877 GO:0019538 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0070647 GO:0071566 GO:0071569 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ThiF

Protein Analysis

381

Amino Acids

42.14

Weight (kDa)

4.57

Isoelectric Point (pI)

41.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ThiF	PF00899	20 - 274	2.5e-56	ThiF family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010013)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05350
fragaria_vesca	FvH4_5g08320 FvH4_5g08320 FvH4_5g08320 FvH4_5g08320
malus_domestica	MD06G1141900.v1.1 MD14G1157100.v1.1
prunus_persica	Prupe.5G151100_v2.0.a1 Prupe.5G151100_v2.0.a1
pyrus_communis	pycom06g13160 pycom14g13060
rosa_chinensis	RchiOBHm_Chr7g0190201
rosa_laevigata	RLG00000004554
rosa_multiflora	Rmu_sc0004886.1_g000018
rosa_roxburghii	Rroxscaffold_3G00264790
rosa_rugosa	Rorug06G0502900
rosa_samantha	Rh7AG108200 Rh7BG110800 Rh7CG113200 Rh7DG111600
rosa_wichuraiana	Rw7G009380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1081
Acc36I	ACCTGC	1 cut(s)	1081
AccI	GTMKAC	1 cut(s)	435
AciI	CCGC	1 cut(s)	1052
AclI	AACGTT	1 cut(s)	1006
AcsI	RAATTY	2 cut(s)	823, 1138
AcuI	CTGAAG	2 cut(s)	62, 1098
AfaI	GTAC	2 cut(s)	209, 297
AfeI	AGCGCT	1 cut(s)	34
AfiI	CCNNNNNNNGG	5 cut(s)	418, 607, 757, 758, 793
AflII	CTTAAG	1 cut(s)	641
AflIII	ACRYGT	1 cut(s)	9
AgsI	TTSAA	3 cut(s)	374, 394, 822
AjnI	CCWGG	1 cut(s)	571
AleI	CACNNNNGTG	1 cut(s)	359
AluBI	AGCT	9 cut(s)	167, 229, 233, 339, 450, 470, 932, 1042, 1114
AluI	AGCT	9 cut(s)	167, 229, 233, 339, 450, 470, 932, 1042, 1114
Alw26I	GTCTC	1 cut(s)	751
AlwNI	CAGNNNCTG	1 cut(s)	290
Aor51HI	AGCGCT	1 cut(s)	34
AoxI	GGCC	3 cut(s)	803, 999, 1131
ApeKI	GCWGC	5 cut(s)	164, 290, 662, 700, 881
ApoI	RAATTY	2 cut(s)	823, 1138
AseI	ATTAAT	1 cut(s)	315
Asp700I	GAANNNNTTC	1 cut(s)	1113
AspLEI	GCGC	1 cut(s)	35
AspS9I	GGNCC	1 cut(s)	1132
AsuHPI	GGTGA	1 cut(s)	587
AsuNHI	GCTAGC	1 cut(s)	229
BaeGI	GKGCMC	1 cut(s)	601
BaeI	ACNNNNGTAYC	2 cut(s)	1080, 1113
BbvCI	CCTCAGC	1 cut(s)	36
BbvI	GCAGC	5 cut(s)	176, 277, 649, 687, 868
BccI	CCATC	4 cut(s)	79, 511, 892, 948
BciT130I	CCWGG	1 cut(s)	573
BcoDI	GTCTC	1 cut(s)	751
BfaI	CTAG	5 cut(s)	230, 704, 873, 885, 1106
BfmI	CTRYAG	1 cut(s)	291
BfoI	RGCGCY	1 cut(s)	36
BfrI	CTTAAG	1 cut(s)	641
BfuAI	ACCTGC	1 cut(s)	1081
BisI	GCNGC	5 cut(s)	165, 291, 663, 701, 882
BlsI	GCNGC	5 cut(s)	166, 292, 664, 702, 883
Bme1390I	CCNGG	1 cut(s)	573
BmgT120I	GGNCC	1 cut(s)	1132
BmrFI	CCNGG	1 cut(s)	573
BmrI	ACTGGG	1 cut(s)	1041
BmsI	GCATC	7 cut(s)	162, 277, 529, 626, 674, 868, 920
BmtI	GCTAGC	1 cut(s)	233
BmuI	ACTGGG	1 cut(s)	1041
Bpu10I	CCTNAGC	1 cut(s)	36
BpuEI	CTTGAG	1 cut(s)	353
BsaBI	GATNNNNATC	1 cut(s)	51
BsaJI	CCNNGG	1 cut(s)	792
Bsc4I	CCNNNNNNNGG	5 cut(s)	418, 607, 757, 758, 793
Bse118I	RCCGGY	1 cut(s)	868
Bse1I	ACTGG	2 cut(s)	387, 1047
Bse3DI	GCAATG	1 cut(s)	502
Bse8I	GATNNNNATC	1 cut(s)	51
BseBI	CCWGG	1 cut(s)	573
BseDI	CCNNGG	1 cut(s)	792
BseGI	GGATG	5 cut(s)	90, 522, 544, 883, 1060
BseJI	GATNNNNATC	1 cut(s)	51
BseLI	CCNNNNNNNGG	5 cut(s)	418, 607, 757, 758, 793
BseMI	GCAATG	1 cut(s)	502
BseMII	CTCAG	5 cut(s)	27, 159, 525, 827, 972
BseNI	ACTGG	2 cut(s)	387, 1047
BseSI	GKGCMC	1 cut(s)	601
BseXI	GCAGC	5 cut(s)	176, 277, 649, 687, 868
BseYI	CCCAGC	1 cut(s)	695
BshFI	GGCC	3 cut(s)	805, 1001, 1133
BsiSI	CCGG	1 cut(s)	869
BslI	CCNNNNNNNGG	5 cut(s)	418, 607, 757, 758, 793
BsmAI	GTCTC	1 cut(s)	751
BsnI	GGCC	3 cut(s)	805, 1001, 1133
Bsp1286I	GDGCHC	1 cut(s)	601
Bsp19I	CCATGG	1 cut(s)	792
BspACI	CCGC	1 cut(s)	1052
BspANI	GGCC	3 cut(s)	805, 1001, 1133
BspCNI	CTCAG	5 cut(s)	28, 160, 526, 826, 973
BspMAI	CTGCAG	1 cut(s)	295
BspMI	ACCTGC	1 cut(s)	1081
BspOI	GCTAGC	1 cut(s)	233
BspQI	GCTCTTC	1 cut(s)	1104
BspTI	CTTAAG	1 cut(s)	641
BsrDI	GCAATG	1 cut(s)	502
BsrFI	RCCGGY	1 cut(s)	868
BsrI	ACTGG	2 cut(s)	387, 1047
BssAI	RCCGGY	1 cut(s)	868
BssECI	CCNNGG	1 cut(s)	792
BssT1I	CCWWGG	1 cut(s)	792
Bst2UI	CCWGG	1 cut(s)	573
Bst4CI	ACNGT	3 cut(s)	62, 361, 1096
Bst6I	CTCTTC	2 cut(s)	1023, 1104
BstAFI	CTTAAG	1 cut(s)	641
BstC8I	GCNNGC	4 cut(s)	231, 493, 861, 870
BstDEI	CTNAG	5 cut(s)	36, 168, 534, 813, 981
BstDSI	CCRYGG	1 cut(s)	792
BstF5I	GGATG	5 cut(s)	90, 522, 544, 883, 1060
BstH2I	RGCGCY	1 cut(s)	36
BstHHI	GCGC	1 cut(s)	35
BstMAI	GTCTC	1 cut(s)	751
BstMWI	GCNNNNNNNGC	6 cut(s)	476, 590, 865, 869, 878, 890
BstNI	CCWGG	1 cut(s)	573
BstNSI	RCATGY	2 cut(s)	13, 597
BstSCI	CCNGG	1 cut(s)	571
BstSFI	CTRYAG	1 cut(s)	291
BstSLI	GKGCMC	1 cut(s)	601
BstV1I	GCAGC	5 cut(s)	176, 277, 649, 687, 868
BsuRI	GGCC	3 cut(s)	805, 1001, 1133
BtgI	CCRYGG	1 cut(s)	792
BtsCI	GGATG	5 cut(s)	90, 522, 544, 883, 1060
BtsI	GCAGTG	1 cut(s)	433
BtsIMutI	CAGTG	5 cut(s)	344, 366, 433, 821, 1054
BveI	ACCTGC	1 cut(s)	1081
Cac8I	GCNNGC	4 cut(s)	231, 493, 861, 870
CaiI	CAGNNNCTG	1 cut(s)	290
CfoI	GCGC	1 cut(s)	35
Cfr10I	RCCGGY	1 cut(s)	868
Cfr13I	GGNCC	1 cut(s)	1132
CseI	GACGC	1 cut(s)	917
CsiI	ACCWGGT	1 cut(s)	571
Csp6I	GTAC	2 cut(s)	208, 296
CviAII	CATG	5 cut(s)	10, 238, 513, 594, 793
CviQI	GTAC	2 cut(s)	208, 296
DdeI	CTNAG	5 cut(s)	36, 168, 534, 813, 981
Eam1104I	CTCTTC	2 cut(s)	1023, 1104
EarI	CTCTTC	2 cut(s)	1023, 1104
Eco130I	CCWWGG	1 cut(s)	792
Eco47III	AGCGCT	1 cut(s)	34
Eco57I	CTGAAG	2 cut(s)	62, 1098
EcoO109I	RGGNCCY	1 cut(s)	1132
EcoRII	CCWGG	1 cut(s)	571
EcoT14I	CCWWGG	1 cut(s)	792
ErhI	CCWWGG	1 cut(s)	792
FaeI	CATG	5 cut(s)	13, 241, 516, 597, 796
FatI	CATG	5 cut(s)	9, 237, 512, 593, 792
FblI	GTMKAC	1 cut(s)	435
Fnu4HI	GCNGC	5 cut(s)	165, 291, 663, 701, 882
FokI	GGATG	5 cut(s)	97, 529, 551, 890, 1067
Fsp4HI	GCNGC	5 cut(s)	165, 291, 663, 701, 882
FspBI	CTAG	5 cut(s)	230, 704, 873, 885, 1106
GlaI	GCGC	1 cut(s)	34
GluI	GCNGC	5 cut(s)	165, 291, 663, 701, 882
GsaI	CCCAGC	1 cut(s)	699
HaeII	RGCGCY	1 cut(s)	36
HaeIII	GGCC	3 cut(s)	805, 1001, 1133
HapII	CCGG	1 cut(s)	869
HgaI	GACGC	1 cut(s)	917
HhaI	GCGC	1 cut(s)	35
Hin1II	CATG	5 cut(s)	13, 241, 516, 597, 796
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
HinfI	GANTC	3 cut(s)	505, 521, 902
HpaII	CCGG	1 cut(s)	869
HphI	GGTGA	1 cut(s)	587
Hpy166II	GTNNAC	1 cut(s)	436
Hpy188I	TCNGA	9 cut(s)	81, 310, 510, 535, 711, 846, 907, 1012, 1119
Hpy188III	TCNNGA	7 cut(s)	260, 320, 621, 836, 944, 1022, 1037
Hpy8I	GTNNAC	1 cut(s)	436
HpyAV	CCTTC	4 cut(s)	209, 416, 644, 1019
HpyCH4III	ACNGT	3 cut(s)	62, 361, 1096
HpyCH4IV	ACGT	2 cut(s)	841, 1006
HpyCH4V	TGCA	6 cut(s)	293, 364, 495, 593, 665, 863
HpyF10VI	GCNNNNNNNGC	6 cut(s)	476, 590, 865, 869, 878, 890
HpyF3I	CTNAG	5 cut(s)	36, 168, 534, 813, 981
HpySE526I	ACGT	2 cut(s)	841, 1006
Hsp92II	CATG	5 cut(s)	13, 241, 516, 597, 796
HspAI	GCGC	1 cut(s)	33
KroI	GCCGGC	1 cut(s)	868
KroNI	GCCGGC	1 cut(s)	870
LguI	GCTCTTC	1 cut(s)	1104
LmnI	GCTCC	2 cut(s)	937, 1039
Lsp1109I	GCAGC	5 cut(s)	176, 277, 649, 687, 868
LweI	GCATC	7 cut(s)	162, 277, 529, 626, 674, 868, 920
MabI	ACCWGGT	1 cut(s)	571
MaeI	CTAG	5 cut(s)	230, 704, 873, 885, 1106
MaeII	ACGT	2 cut(s)	841, 1006
MaeIII	GTNAC	1 cut(s)	5
MboII	GAAGA	3 cut(s)	775, 1010, 1121
MhlI	GDGCHC	1 cut(s)	601
MluCI	AATT	4 cut(s)	460, 766, 823, 1138
MlyI	GAGTC	1 cut(s)	530
MmeI	TCCRAC	1 cut(s)	118
MnlI	CCTC	7 cut(s)	31, 75, 529, 795, 822, 991, 1123
MroNI	GCCGGC	1 cut(s)	868
MroXI	GAANNNNTTC	1 cut(s)	1113
MseI	TTAA	6 cut(s)	315, 446, 483, 642, 774, 1144
MslI	CAYNNNNRTG	2 cut(s)	359, 797
MspA1I	CMGCKG	1 cut(s)	167
MspCI	CTTAAG	1 cut(s)	641
MspI	CCGG	1 cut(s)	869
MspR9I	CCNGG	1 cut(s)	573
MvaI	CCWGG	1 cut(s)	573
MwoI	GCNNNNNNNGC	6 cut(s)	476, 590, 865, 869, 878, 890
NaeI	GCCGGC	1 cut(s)	870
NcoI	CCATGG	1 cut(s)	792
NgoMIV	GCCGGC	1 cut(s)	868
NheI	GCTAGC	1 cut(s)	229
NlaIII	CATG	5 cut(s)	13, 241, 516, 597, 796
NspI	RCATGY	2 cut(s)	13, 597
OliI	CACNNNNGTG	1 cut(s)	359
PaqCI	CACCTGC	1 cut(s)	1081
PciI	ACATGT	1 cut(s)	9
PciSI	GCTCTTC	1 cut(s)	1104
PdiI	GCCGGC	1 cut(s)	870
PdmI	GAANNNNTTC	1 cut(s)	1113
PfeI	GAWTC	2 cut(s)	505, 902
PkrI	GCNGC	5 cut(s)	166, 292, 664, 702, 883
PleI	GAGTC	1 cut(s)	529
PpsI	GAGTC	1 cut(s)	529
PscI	ACATGT	1 cut(s)	9
PshBI	ATTAAT	1 cut(s)	315
Psp1406I	AACGTT	1 cut(s)	1006
Psp6I	CCWGG	1 cut(s)	571
PspFI	CCCAGC	1 cut(s)	695
PspGI	CCWGG	1 cut(s)	571
PspPI	GGNCC	1 cut(s)	1132
PstI	CTGCAG	1 cut(s)	295
PstNI	CAGNNNCTG	1 cut(s)	290
PvuII	CAGCTG	1 cut(s)	167
RsaI	GTAC	2 cut(s)	209, 297
RsaNI	GTAC	2 cut(s)	208, 296
RseI	CAYNNNNRTG	2 cut(s)	359, 797
SapI	GCTCTTC	1 cut(s)	1104
SaqAI	TTAA	6 cut(s)	315, 446, 483, 642, 774, 1144
SatI	GCNGC	5 cut(s)	165, 291, 663, 701, 882
Sau96I	GGNCC	1 cut(s)	1132
SchI	GAGTC	1 cut(s)	530
ScrFI	CCNGG	1 cut(s)	573
SduI	GDGCHC	1 cut(s)	601
SexAI	ACCWGGT	1 cut(s)	571
SfaNI	GCATC	7 cut(s)	162, 277, 529, 626, 674, 868, 920
SfcI	CTRYAG	1 cut(s)	291
SmiMI	CAYNNNNRTG	2 cut(s)	359, 797
SmlI	CTYRAG	3 cut(s)	332, 641, 1127
SmoI	CTYRAG	3 cut(s)	332, 641, 1127
Sse9I	AATT	4 cut(s)	460, 766, 823, 1138
SsiI	CCGC	1 cut(s)	1052
SspMI	CTAG	5 cut(s)	230, 704, 873, 885, 1106
StyD4I	CCNGG	1 cut(s)	571
StyI	CCWWGG	1 cut(s)	792
TaaI	ACNGT	3 cut(s)	62, 361, 1096
TaiI	ACGT	2 cut(s)	844, 1009
TaqI	TCGA	2 cut(s)	472, 972
TasI	AATT	4 cut(s)	460, 766, 823, 1138
TatI	WGTACW	1 cut(s)	295
TfiI	GAWTC	2 cut(s)	505, 902
Tru1I	TTAA	6 cut(s)	315, 446, 483, 642, 774, 1144
Tru9I	TTAA	6 cut(s)	315, 446, 483, 642, 774, 1144
TscAI	CASTG	5 cut(s)	351, 366, 433, 821, 1054
TseI	GCWGC	5 cut(s)	164, 290, 662, 700, 881
TspDTI	ATGAA	5 cut(s)	120, 254, 513, 645, 966
TspGWI	ACGGA	1 cut(s)	115
TspRI	CASTG	5 cut(s)	351, 366, 433, 821, 1054
Vha464I	CTTAAG	1 cut(s)	641
VspI	ATTAAT	1 cut(s)	315
XapI	RAATTY	2 cut(s)	823, 1138
XceI	RCATGY	2 cut(s)	13, 597
XmiI	GTMKAC	1 cut(s)	435
XmnI	GAANNNNTTC	1 cut(s)	1113
XspI	CTAG	5 cut(s)	230, 704, 873, 885, 1106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.