Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0010013

Physical Location & Seq

Genomic Coordinates Reverse (-)

58310860 .. 58315149

Gene Structure 4290 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00264790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGGAGGTGGAATTGAAGGAGATGCTTAACGACCTCGATTCGCTGAAGAGATTGCTCACCGATCCTTCGCAGAGCGCTCAATCGATAAAGTATCTACAACTGCGTGTTGAACGCCTTACCAGTCTTGCAAAAACAGGACCTGTTCGGCGATCCAAAGTTCAGGATATGAGCGCTGAGGTGGTAGATAGCAATCCTTACAGTAGGCTTATGGCACTTCAGAGGATGGGCATTGTGAAAAACTATGAAAGAATAAGGGAGTTCTCTGTAGCCATAGTTGGAGTAGGTGGCGTAGGAAGTGTAGCGGCTGAGATGCTAACAAGATGTGGTATTGGTCGCCTTCTGTTGTACGATTATGATAAAGTAGAGCTAGCTAACATGAATAGGTTATTCTTTCGTCCAGAGAGCAGGTTAGGTGCTGCTGCTTCTAGACTGTATAAAAATTCCTTTTCTTCTTGCTGCCTTTGTGTTGCCAATTTTAGTGGTATGACAAAAACAGATGCTGCTGTACAGACCCTTTCAGACATAAATCCTGATGTTGTGCTTGAGTGCAAGGTTTTGAAACCTTTACGTCCCAGTTTGAAAAATAAATCATTTCGCCCAGATAAGGAAGGCAGTGGAGTAGACCTTGTGTTAAGCTGTGTTGATAATTACGAAGCTCGAATGGCTGTTAATCAGGCTTGCAATGAACTGAATCAGACATGGATGGAGTCTGGTGTTTCTGAAGATGCTGTTTCAGGTCATATTCAGTTGCTTATACCTGGTGAAACTGCCTGTTTTGCATGTGCCCCACCTTTGGGATATAATTCTCTTAAAGACTTCTTCCCCACCATGGAAATGAGGCCAAATCCTCAGTGTTCAAATTTTGCTTGTCTGGAACGTCAGAAAGAATACTTGCTTGCAAAGCCGGCTAGGGATGCTGCTAGTAAAGCAAAGATGGAATCTGACGCATCATCATCTGTAATAGAAGCTCCACTCCATCTTGATAATGAATGGGAAATAAGTGTTGTCGATGATACTGAGCCAGATAGGATAGAGGCCAAATGTTCAGATACTCTTCCAGAAGGTCTTGTTCAGGAGCTACCCAGTGCGGATGACTTCCAAAAACCACCTGCTGAAGCCACAGATACTACTGTTGATGACCTAGAAGAACTTCGGAAACAACTTGAGGCCCTAAATTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0008641 GO:0009987 GO:0016874 GO:0016877 GO:0019538 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0070647 GO:0071566 GO:0071569 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ThiF

Protein Analysis

393

Amino Acids

43.48

Weight (kDa)

4.88

Isoelectric Point (pI)

43.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ThiF	PF00899	66 - 270	3.7e-37	ThiF family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010013)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05350
fragaria_vesca	FvH4_5g08320 FvH4_5g08320 FvH4_5g08320 FvH4_5g08320
malus_domestica	MD06G1141900.v1.1 MD14G1157100.v1.1
prunus_persica	Prupe.5G151100_v2.0.a1 Prupe.5G151100_v2.0.a1
pyrus_communis	pycom06g13160 pycom14g13060
rosa_chinensis	RchiOBHm_Chr7g0190201
rosa_laevigata	RLG00000004554
rosa_multiflora	Rmu_sc0004886.1_g000018
rosa_roxburghii	Rroxscaffold_3G00264790
rosa_rugosa	Rorug06G0502900
rosa_samantha	Rh7AG108200 Rh7BG110800 Rh7CG113200 Rh7DG111600
rosa_wichuraiana	Rw7G009380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1117
Acc36I	ACCTGC	2 cut(s)	396, 1117
AccI	GTMKAC	1 cut(s)	621
AciI	CCGC	2 cut(s)	302, 1088
AclWI	GGATC	2 cut(s)	56, 144
AcsI	RAATTY	3 cut(s)	439, 859, 1174
AcuI	CTGAAG	4 cut(s)	65, 200, 741, 1134
AfaI	GTAC	2 cut(s)	347, 507
AfeI	AGCGCT	2 cut(s)	76, 172
AfiI	CCNNNNNNNGG	4 cut(s)	604, 793, 794, 829
AgsI	TTSAA	5 cut(s)	16, 110, 559, 580, 858
AjnI	CCWGG	1 cut(s)	757
AluBI	AGCT	6 cut(s)	367, 371, 636, 656, 968, 1078
AluI	AGCT	6 cut(s)	367, 371, 636, 656, 968, 1078
AlwI	GGATC	2 cut(s)	56, 144
AlwNI	CAGNNNCTG	2 cut(s)	140, 500
Aor51HI	AGCGCT	2 cut(s)	76, 172
AoxI	GGCC	3 cut(s)	839, 1035, 1167
ApeKI	GCWGC	5 cut(s)	416, 419, 456, 500, 917
ApoI	RAATTY	3 cut(s)	439, 859, 1174
Asp700I	GAANNNNTTC	1 cut(s)	1149
AspLEI	GCGC	2 cut(s)	77, 173
AspS9I	GGNCC	2 cut(s)	137, 1168
AsuHPI	GGTGA	2 cut(s)	49, 773
AsuNHI	GCTAGC	1 cut(s)	367
AvaII	GGWCC	1 cut(s)	137
BaeGI	GKGCMC	1 cut(s)	787
BaeI	ACNNNNGTAYC	2 cut(s)	1116, 1149
BbvCI	CCTCAGC	1 cut(s)	174
BbvI	GCAGC	5 cut(s)	403, 406, 443, 487, 904
BccI	CCATC	4 cut(s)	217, 697, 928, 984
BciT130I	CCWGG	1 cut(s)	759
BfaI	CTAG	5 cut(s)	368, 426, 909, 921, 1142
BfmI	CTRYAG	1 cut(s)	264
BfoI	RGCGCY	2 cut(s)	78, 174
BfuAI	ACCTGC	2 cut(s)	396, 1117
BisI	GCNGC	6 cut(s)	303, 417, 420, 457, 501, 918
BlsI	GCNGC	6 cut(s)	304, 418, 421, 458, 502, 919
Bme1390I	CCNGG	1 cut(s)	759
Bme18I	GGWCC	1 cut(s)	137
BmgT120I	GGNCC	2 cut(s)	137, 1168
BmrFI	CCNGG	1 cut(s)	759
BmrI	ACTGGG	2 cut(s)	567, 1077
BmsI	GCATC	6 cut(s)	12, 300, 487, 715, 904, 956
BmtI	GCTAGC	1 cut(s)	371
BmuI	ACTGGG	2 cut(s)	567, 1077
Bpu10I	CCTNAGC	1 cut(s)	174
BpuEI	CTTGAG	1 cut(s)	563
Bsa29I	ATCGAT	1 cut(s)	83
BsaBI	GATNNNNATC	1 cut(s)	189
BsaJI	CCNNGG	1 cut(s)	828
Bsc4I	CCNNNNNNNGG	4 cut(s)	604, 793, 794, 829
Bse118I	RCCGGY	1 cut(s)	904
Bse1I	ACTGG	3 cut(s)	120, 573, 1083
Bse3DI	GCAATG	1 cut(s)	688
Bse8I	GATNNNNATC	1 cut(s)	189
BseBI	CCWGG	1 cut(s)	759
BseCI	ATCGAT	1 cut(s)	83
BseDI	CCNNGG	1 cut(s)	828
BseGI	GGATG	4 cut(s)	228, 708, 919, 1096
BseJI	GATNNNNATC	1 cut(s)	189
BseLI	CCNNNNNNNGG	4 cut(s)	604, 793, 794, 829
BseMI	GCAATG	1 cut(s)	688
BseMII	CTCAG	4 cut(s)	165, 297, 863, 1008
BseNI	ACTGG	3 cut(s)	120, 573, 1083
BseSI	GKGCMC	1 cut(s)	787
BseXI	GCAGC	5 cut(s)	403, 406, 443, 487, 904
BshFI	GGCC	3 cut(s)	841, 1037, 1169
BshVI	ATCGAT	1 cut(s)	83
BsiSI	CCGG	1 cut(s)	905
BslFI	GGGAC	1 cut(s)	555
BslI	CCNNNNNNNGG	4 cut(s)	604, 793, 794, 829
BsmFI	GGGAC	1 cut(s)	555
BsnI	GGCC	3 cut(s)	841, 1037, 1169
Bsp1286I	GDGCHC	1 cut(s)	787
Bsp1407I	TGTACA	1 cut(s)	505
Bsp143I	GATC	2 cut(s)	61, 149
Bsp19I	CCATGG	1 cut(s)	828
BspACI	CCGC	2 cut(s)	302, 1088
BspANI	GGCC	3 cut(s)	841, 1037, 1169
BspCNI	CTCAG	4 cut(s)	166, 298, 862, 1009
BspDI	ATCGAT	1 cut(s)	83
BspMI	ACCTGC	2 cut(s)	396, 1117
BspOI	GCTAGC	1 cut(s)	371
BspPI	GGATC	2 cut(s)	56, 144
BsrDI	GCAATG	1 cut(s)	688
BsrFI	RCCGGY	1 cut(s)	904
BsrGI	TGTACA	1 cut(s)	505
BsrI	ACTGG	3 cut(s)	120, 573, 1083
BssAI	RCCGGY	1 cut(s)	904
BssECI	CCNNGG	1 cut(s)	828
BssMI	GATC	2 cut(s)	61, 149
BssT1I	CCWWGG	1 cut(s)	828
Bst2UI	CCWGG	1 cut(s)	759
Bst4CI	ACNGT	3 cut(s)	200, 432, 1132
Bst6I	CTCTTC	2 cut(s)	41, 1059
BstAUI	TGTACA	1 cut(s)	505
BstC8I	GCNNGC	4 cut(s)	369, 679, 897, 906
BstDEI	CTNAG	4 cut(s)	174, 306, 849, 1017
BstDSI	CCRYGG	1 cut(s)	828
BstF5I	GGATG	4 cut(s)	228, 708, 919, 1096
BstH2I	RGCGCY	2 cut(s)	78, 174
BstHHI	GCGC	2 cut(s)	77, 173
BstKTI	GATC	2 cut(s)	64, 152
BstMBI	GATC	2 cut(s)	61, 149
BstMWI	GCNNNNNNNGC	6 cut(s)	662, 776, 901, 905, 914, 926
BstNI	CCWGG	1 cut(s)	759
BstNSI	RCATGY	1 cut(s)	783
BstSCI	CCNGG	1 cut(s)	757
BstSFI	CTRYAG	1 cut(s)	264
BstSLI	GKGCMC	1 cut(s)	787
BstV1I	GCAGC	5 cut(s)	403, 406, 443, 487, 904
Bsu15I	ATCGAT	1 cut(s)	83
BsuRI	GGCC	3 cut(s)	841, 1037, 1169
BsuTUI	ATCGAT	1 cut(s)	83
BtgI	CCRYGG	1 cut(s)	828
BtsCI	GGATG	4 cut(s)	228, 708, 919, 1096
BtsI	GCAGTG	1 cut(s)	619
BtsIMutI	CAGTG	3 cut(s)	619, 857, 1090
BveI	ACCTGC	2 cut(s)	396, 1117
Cac8I	GCNNGC	4 cut(s)	369, 679, 897, 906
CaiI	CAGNNNCTG	2 cut(s)	140, 500
CfoI	GCGC	2 cut(s)	77, 173
Cfr10I	RCCGGY	1 cut(s)	904
Cfr13I	GGNCC	2 cut(s)	137, 1168
ClaI	ATCGAT	1 cut(s)	83
CseI	GACGC	1 cut(s)	953
CsiI	ACCWGGT	1 cut(s)	757
Csp6I	GTAC	2 cut(s)	346, 506
CspCI	CAANNNNNGTGG	2 cut(s)	460, 495
CviAII	CATG	4 cut(s)	376, 699, 780, 829
CviQI	GTAC	2 cut(s)	346, 506
DdeI	CTNAG	4 cut(s)	174, 306, 849, 1017
DpnI	GATC	2 cut(s)	63, 151
DpnII	GATC	2 cut(s)	61, 149
Eam1104I	CTCTTC	2 cut(s)	41, 1059
EarI	CTCTTC	2 cut(s)	41, 1059
Eco130I	CCWWGG	1 cut(s)	828
Eco47I	GGWCC	1 cut(s)	137
Eco47III	AGCGCT	2 cut(s)	76, 172
Eco57I	CTGAAG	4 cut(s)	65, 200, 741, 1134
EcoO109I	RGGNCCY	2 cut(s)	137, 1168
EcoRII	CCWGG	1 cut(s)	757
EcoT14I	CCWWGG	1 cut(s)	828
ErhI	CCWWGG	1 cut(s)	828
FaeI	CATG	4 cut(s)	379, 702, 783, 832
FaqI	GGGAC	1 cut(s)	555
FatI	CATG	4 cut(s)	375, 698, 779, 828
FblI	GTMKAC	1 cut(s)	621
Fnu4HI	GCNGC	6 cut(s)	303, 417, 420, 457, 501, 918
FokI	GGATG	4 cut(s)	235, 715, 926, 1103
Fsp4HI	GCNGC	6 cut(s)	303, 417, 420, 457, 501, 918
FspBI	CTAG	5 cut(s)	368, 426, 909, 921, 1142
GlaI	GCGC	2 cut(s)	76, 172
GluI	GCNGC	6 cut(s)	303, 417, 420, 457, 501, 918
HaeII	RGCGCY	2 cut(s)	78, 174
HaeIII	GGCC	3 cut(s)	841, 1037, 1169
HapII	CCGG	1 cut(s)	905
HgaI	GACGC	1 cut(s)	953
HhaI	GCGC	2 cut(s)	77, 173
Hin1II	CATG	4 cut(s)	379, 702, 783, 832
Hin6I	GCGC	2 cut(s)	75, 171
HinP1I	GCGC	2 cut(s)	75, 171
HinfI	GANTC	4 cut(s)	38, 691, 707, 938
HpaII	CCGG	1 cut(s)	905
HphI	GGTGA	2 cut(s)	49, 773
Hpy166II	GTNNAC	1 cut(s)	622
Hpy188I	TCNGA	8 cut(s)	219, 520, 696, 721, 882, 943, 1048, 1155
Hpy188III	TCNNGA	8 cut(s)	161, 398, 426, 530, 872, 980, 1058, 1073
Hpy8I	GTNNAC	1 cut(s)	622
HpyAV	CCTTC	5 cut(s)	10, 75, 347, 602, 1055
HpyCH4III	ACNGT	3 cut(s)	200, 432, 1132
HpyCH4IV	ACGT	2 cut(s)	568, 877
HpyCH4V	TGCA	5 cut(s)	128, 549, 681, 779, 899
HpyF10VI	GCNNNNNNNGC	6 cut(s)	662, 776, 901, 905, 914, 926
HpyF3I	CTNAG	4 cut(s)	174, 306, 849, 1017
HpySE526I	ACGT	2 cut(s)	568, 877
Hsp92II	CATG	4 cut(s)	379, 702, 783, 832
HspAI	GCGC	2 cut(s)	75, 171
KroI	GCCGGC	1 cut(s)	904
KroNI	GCCGGC	1 cut(s)	906
Kzo9I	GATC	2 cut(s)	61, 149
LmnI	GCTCC	2 cut(s)	973, 1075
Lsp1109I	GCAGC	5 cut(s)	403, 406, 443, 487, 904
LweI	GCATC	6 cut(s)	12, 300, 487, 715, 904, 956
MabI	ACCWGGT	1 cut(s)	757
MaeI	CTAG	5 cut(s)	368, 426, 909, 921, 1142
MaeII	ACGT	2 cut(s)	568, 877
MalI	GATC	2 cut(s)	63, 151
MboI	GATC	2 cut(s)	61, 149
MboII	GAAGA	6 cut(s)	58, 441, 734, 811, 1046, 1157
MhlI	GDGCHC	1 cut(s)	787
MluCI	AATT	7 cut(s)	11, 439, 472, 646, 802, 859, 1174
MlyI	GAGTC	1 cut(s)	716
MmeI	TCCRAC	1 cut(s)	256
MnlI	CCTC	7 cut(s)	44, 169, 213, 831, 858, 1027, 1159
MroNI	GCCGGC	1 cut(s)	904
MroXI	GAANNNNTTC	1 cut(s)	1149
MseI	TTAA	4 cut(s)	27, 632, 669, 810
MslI	CAYNNNNRTG	1 cut(s)	833
MspI	CCGG	1 cut(s)	905
MspR9I	CCNGG	1 cut(s)	759
MvaI	CCWGG	1 cut(s)	759
MwoI	GCNNNNNNNGC	6 cut(s)	662, 776, 901, 905, 914, 926
NaeI	GCCGGC	1 cut(s)	906
NcoI	CCATGG	1 cut(s)	828
NdeII	GATC	2 cut(s)	61, 149
NgoMIV	GCCGGC	1 cut(s)	904
NheI	GCTAGC	1 cut(s)	367
NlaIII	CATG	4 cut(s)	379, 702, 783, 832
NspI	RCATGY	1 cut(s)	783
PaqCI	CACCTGC	1 cut(s)	1117
PdiI	GCCGGC	1 cut(s)	906
PdmI	GAANNNNTTC	1 cut(s)	1149
PfeI	GAWTC	3 cut(s)	38, 691, 938
PkrI	GCNGC	6 cut(s)	304, 418, 421, 458, 502, 919
PleI	GAGTC	1 cut(s)	715
PpsI	GAGTC	1 cut(s)	715
PpuMI	RGGWCCY	1 cut(s)	137
Psp5II	RGGWCCY	1 cut(s)	137
Psp6I	CCWGG	1 cut(s)	757
PspGI	CCWGG	1 cut(s)	757
PspPI	GGNCC	2 cut(s)	137, 1168
PspPPI	RGGWCCY	1 cut(s)	137
PstNI	CAGNNNCTG	2 cut(s)	140, 500
RsaI	GTAC	2 cut(s)	347, 507
RsaNI	GTAC	2 cut(s)	346, 506
RseI	CAYNNNNRTG	1 cut(s)	833
SaqAI	TTAA	4 cut(s)	27, 632, 669, 810
SatI	GCNGC	6 cut(s)	303, 417, 420, 457, 501, 918
Sau3AI	GATC	2 cut(s)	61, 149
Sau96I	GGNCC	2 cut(s)	137, 1168
SchI	GAGTC	1 cut(s)	716
ScrFI	CCNGG	1 cut(s)	759
SduI	GDGCHC	1 cut(s)	787
SexAI	ACCWGGT	1 cut(s)	757
SfaNI	GCATC	6 cut(s)	12, 300, 487, 715, 904, 956
SfcI	CTRYAG	1 cut(s)	264
SinI	GGWCC	1 cut(s)	137
SmiMI	CAYNNNNRTG	1 cut(s)	833
SmlI	CTYRAG	2 cut(s)	542, 1163
SmoI	CTYRAG	2 cut(s)	542, 1163
Sse9I	AATT	7 cut(s)	11, 439, 472, 646, 802, 859, 1174
SsiI	CCGC	2 cut(s)	302, 1088
SspMI	CTAG	5 cut(s)	368, 426, 909, 921, 1142
StyD4I	CCNGG	1 cut(s)	757
StyI	CCWWGG	1 cut(s)	828
TaaI	ACNGT	3 cut(s)	200, 432, 1132
TaiI	ACGT	2 cut(s)	571, 880
TaqI	TCGA	4 cut(s)	36, 83, 658, 1008
TasI	AATT	7 cut(s)	11, 439, 472, 646, 802, 859, 1174
TatI	WGTACW	1 cut(s)	505
TauI	GCSGC	1 cut(s)	305
TfiI	GAWTC	3 cut(s)	38, 691, 938
Tru1I	TTAA	4 cut(s)	27, 632, 669, 810
Tru9I	TTAA	4 cut(s)	27, 632, 669, 810
TscAI	CASTG	3 cut(s)	619, 857, 1090
TseI	GCWGC	5 cut(s)	416, 419, 456, 500, 917
TspDTI	ATGAA	4 cut(s)	258, 392, 699, 1002
TspRI	CASTG	3 cut(s)	619, 857, 1090
VpaK11BI	GGWCC	1 cut(s)	137
XapI	RAATTY	3 cut(s)	439, 859, 1174
XbaI	TCTAGA	1 cut(s)	425
XceI	RCATGY	1 cut(s)	783
XmiI	GTMKAC	1 cut(s)	621
XmnI	GAANNNNTTC	1 cut(s)	1149
XspI	CTAG	5 cut(s)	368, 426, 909, 921, 1142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.