Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0010751

Physical Location & Seq

Genomic Coordinates Reverse (-)

16516942 .. 16519152

Gene Structure 2211 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGAAGAAAATCAACCTGTTTGTTTCAATCCTCTTCTTGTTATACCTTCAACAAACACTCCAAGTCTCCTCCCTTACGCAGGCAAACCAGGATTTTGAAAAATCCGAATCTTCAAGAACTCTTGAACAAGAGCATGCTCATGAAGTACATTGTTCCAGAGAAAGAAGTAGGGCAGCATGGCAAATTATCGAGAAGTATTTGATGCCAGTTGTGGAACAAGAGCACTATGAGATTCCAAGTAACTGTCGACTTCATCCCGACAATGATCTATTTAGAGATCAGGAAGTGCACAAGGTTCAGTTGGATATAAACGAATGGCAGTGTGGATACTGTAAGAAAAGCTTCCGTGCTGAAATGTTTCTTGATCAACATTTTGACAACAGACACTACAATCTTCTGAATATAAGTGGAAGCAAGTGCTTAGCTGATTTATGCGGAGCTTTGCATTGTGATGCTGTTATGAATACCAAGTCAAGCAAAACCAAATGCAATCCTGCTGCTGTTGCAAGGAATCACCACCTATGGTCTTGCCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

179

Amino Acids

20.82

Weight (kDa)

6.58

Isoelectric Point (pI)

49.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010751)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63280
fragaria_vesca	FvH4_5g07330 FvH4_5g07330 FvH4_5g07330
malus_domestica	MD06G1153500.v1.1 MD06G1157300.v1.1 MD14G1163900.v1.1
prunus_persica	Prupe.5G157300_v2.0.a1 Prupe.5G157300_v2.0.a1 Prupe.5G157300_v2.0.a1 Prupe.5G157300_v2.0.a1
pyrus_communis	pycom14g13660
rosa_chinensis	RchiOBHm_Chr7g0191231
rosa_laevigata	RLG00000004467
rosa_multiflora	Rmu_sc0004860.1_g000012
rosa_roxburghii	Rroxscaffold_3G00263960
rosa_rugosa	Rorug06G0509700
rosa_samantha	Rh7AG116900 Rh7CG121800 Rh7DG120300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	247
AciI	CCGC	1 cut(s)	435
AfaI	GTAC	1 cut(s)	147
AfiI	CCNNNNNNNGG	1 cut(s)	79
AgsI	TTSAA	5 cut(s)	27, 50, 98, 114, 125
AjnI	CCWGG	1 cut(s)	87
AluBI	AGCT	3 cut(s)	342, 425, 440
AluI	AGCT	3 cut(s)	342, 425, 440
Alw21I	GWGCWC	2 cut(s)	225, 291
Alw26I	GTCTC	1 cut(s)	70
Alw44I	GTGCAC	1 cut(s)	287
ApaLI	GTGCAC	1 cut(s)	287
ApeKI	GCWGC	2 cut(s)	173, 497
Asp700I	GAANNNNTTC	2 cut(s)	341, 357
AsuHPI	GGTGA	1 cut(s)	506
BaeGI	GKGCMC	1 cut(s)	291
Bbv12I	GWGCWC	2 cut(s)	225, 291
BbvI	GCAGC	2 cut(s)	185, 484
BciT130I	CCWGG	1 cut(s)	89
BciVI	GTATCC	1 cut(s)	320
BclI	TGATCA	1 cut(s)	364
BcoDI	GTCTC	1 cut(s)	70
BfuI	GTATCC	1 cut(s)	320
BisI	GCNGC	2 cut(s)	174, 498
BlpI	GCTNAGC	1 cut(s)	421
BlsI	GCNGC	2 cut(s)	175, 499
Bme1390I	CCNGG	1 cut(s)	89
BmrFI	CCNGG	1 cut(s)	89
BmsI	GCATC	2 cut(s)	192, 442
Bpu1102I	GCTNAGC	1 cut(s)	421
BsaXI	ACNNNNNCTCC	2 cut(s)	42, 72
Bsc4I	CCNNNNNNNGG	1 cut(s)	79
Bse1I	ACTGG	1 cut(s)	206
BseBI	CCWGG	1 cut(s)	89
BseGI	GGATG	1 cut(s)	253
BseLI	CCNNNNNNNGG	1 cut(s)	79
BseNI	ACTGG	1 cut(s)	206
BseRI	GAGGAG	1 cut(s)	58
BseSI	GKGCMC	1 cut(s)	291
BseXI	GCAGC	2 cut(s)	185, 484
BsiHKAI	GWGCWC	2 cut(s)	225, 291
BslI	CCNNNNNNNGG	1 cut(s)	79
BsmAI	GTCTC	1 cut(s)	70
Bsp1286I	GDGCHC	2 cut(s)	225, 291
Bsp143I	GATC	3 cut(s)	265, 277, 364
Bsp1720I	GCTNAGC	1 cut(s)	421
BspACI	CCGC	1 cut(s)	435
BspHI	TCATGA	1 cut(s)	139
BsrI	ACTGG	1 cut(s)	206
BssMI	GATC	3 cut(s)	265, 277, 364
Bst2UI	CCWGG	1 cut(s)	89
Bst4CI	ACNGT	2 cut(s)	245, 332
Bst6I	CTCTTC	1 cut(s)	38
BstC8I	GCNNGC	2 cut(s)	81, 135
BstDEI	CTNAG	1 cut(s)	421
BstENI	CCTNNNNNAGG	1 cut(s)	77
BstF5I	GGATG	1 cut(s)	253
BstKTI	GATC	3 cut(s)	268, 280, 367
BstMAI	GTCTC	1 cut(s)	70
BstMBI	GATC	3 cut(s)	265, 277, 364
BstMWI	GCNNNNNNNGC	1 cut(s)	503
BstNI	CCWGG	1 cut(s)	89
BstNSI	RCATGY	1 cut(s)	137
BstSCI	CCNGG	1 cut(s)	87
BstSLI	GKGCMC	1 cut(s)	291
BstV1I	GCAGC	2 cut(s)	185, 484
BsuI	GTATCC	1 cut(s)	320
BtsCI	GGATG	1 cut(s)	253
BtsI	GCAGTG	1 cut(s)	326
BtsIMutI	CAGTG	1 cut(s)	326
Cac8I	GCNNGC	2 cut(s)	81, 135
CciI	TCATGA	1 cut(s)	139
Csp6I	GTAC	1 cut(s)	146
CviAII	CATG	3 cut(s)	134, 140, 177
CviJI	RGCY	3 cut(s)	342, 425, 440
CviKI_1	RGCY	3 cut(s)	342, 425, 440
CviQI	GTAC	1 cut(s)	146
DdeI	CTNAG	1 cut(s)	421
DpnI	GATC	3 cut(s)	267, 279, 366
DpnII	GATC	3 cut(s)	265, 277, 364
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
EcoNI	CCTNNNNNAGG	1 cut(s)	77
EcoRII	CCWGG	1 cut(s)	87
FaeI	CATG	3 cut(s)	137, 143, 180
FalI	AAGNNNNNCTT	2 cut(s)	326, 358
FatI	CATG	3 cut(s)	133, 139, 176
FbaI	TGATCA	1 cut(s)	364
FblI	GTMKAC	1 cut(s)	247
Fnu4HI	GCNGC	2 cut(s)	174, 498
FokI	GGATG	1 cut(s)	240
Fsp4HI	GCNGC	2 cut(s)	174, 498
GluI	GCNGC	2 cut(s)	174, 498
Hin1II	CATG	3 cut(s)	137, 143, 180
HincII	GTYRAC	1 cut(s)	248
HindII	GTYRAC	1 cut(s)	248
HindIII	AAGCTT	1 cut(s)	340
HinfI	GANTC	3 cut(s)	107, 232, 511
HphI	GGTGA	1 cut(s)	506
Hpy166II	GTNNAC	2 cut(s)	248, 289
Hpy188I	TCNGA	2 cut(s)	106, 399
Hpy188III	TCNNGA	8 cut(s)	114, 122, 140, 156, 190, 257, 281, 362
Hpy8I	GTNNAC	2 cut(s)	248, 289
HpyAV	CCTTC	1 cut(s)	56
HpyCH4III	ACNGT	2 cut(s)	245, 332
HpyCH4V	TGCA	4 cut(s)	289, 445, 489, 506
HpyF10VI	GCNNNNNNNGC	1 cut(s)	503
HpyF3I	CTNAG	1 cut(s)	421
Hsp92II	CATG	3 cut(s)	137, 143, 180
Ksp22I	TGATCA	1 cut(s)	364
Kzo9I	GATC	3 cut(s)	265, 277, 364
LmnI	GCTCC	1 cut(s)	437
LpnPI	CCDG	8 cut(s)	29, 65, 74, 101, 169, 219, 266, 507
Lsp1109I	GCAGC	2 cut(s)	185, 484
LweI	GCATC	2 cut(s)	192, 442
MaeIII	GTNAC	1 cut(s)	239
MalI	GATC	3 cut(s)	267, 279, 366
MboI	GATC	3 cut(s)	265, 277, 364
MboII	GAAGA	4 cut(s)	16, 25, 102, 386
MhlI	GDGCHC	2 cut(s)	225, 291
MluCI	AATT	1 cut(s)	183
MmeI	TCCRAC	1 cut(s)	282
MnlI	CCTC	2 cut(s)	41, 79
MroXI	GAANNNNTTC	2 cut(s)	341, 357
MslI	CAYNNNNRTG	2 cut(s)	138, 450
MspR9I	CCNGG	1 cut(s)	89
MvaI	CCWGG	1 cut(s)	89
MwoI	GCNNNNNNNGC	1 cut(s)	503
NdeII	GATC	3 cut(s)	265, 277, 364
NlaIII	CATG	3 cut(s)	137, 143, 180
NspI	RCATGY	1 cut(s)	137
PaeI	GCATGC	1 cut(s)	137
PagI	TCATGA	1 cut(s)	139
PdmI	GAANNNNTTC	2 cut(s)	341, 357
PfeI	GAWTC	3 cut(s)	107, 232, 511
PkrI	GCNGC	2 cut(s)	175, 499
Psp6I	CCWGG	1 cut(s)	87
PspGI	CCWGG	1 cut(s)	87
RsaI	GTAC	1 cut(s)	147
RsaNI	GTAC	1 cut(s)	146
RseI	CAYNNNNRTG	2 cut(s)	138, 450
SalI	GTCGAC	1 cut(s)	246
SatI	GCNGC	2 cut(s)	174, 498
Sau3AI	GATC	3 cut(s)	265, 277, 364
ScrFI	CCNGG	1 cut(s)	89
SduI	GDGCHC	2 cut(s)	225, 291
SetI	ASST	7 cut(s)	18, 48, 297, 344, 427, 442, 522
SfaNI	GCATC	2 cut(s)	192, 442
SmiMI	CAYNNNNRTG	2 cut(s)	138, 450
SphI	GCATGC	1 cut(s)	137
Sse9I	AATT	1 cut(s)	183
SsiI	CCGC	1 cut(s)	435
StyD4I	CCNGG	1 cut(s)	87
TaaI	ACNGT	2 cut(s)	245, 332
TaqI	TCGA	2 cut(s)	189, 247
TasI	AATT	1 cut(s)	183
TatI	WGTACW	1 cut(s)	145
TfiI	GAWTC	3 cut(s)	107, 232, 511
TscAI	CASTG	1 cut(s)	326
TseI	GCWGC	2 cut(s)	173, 497
TspDTI	ATGAA	4 cut(s)	17, 156, 242, 476
TspGWI	ACGGA	1 cut(s)	335
TspRI	CASTG	1 cut(s)	326
VneI	GTGCAC	1 cut(s)	287
XagI	CCTNNNNNAGG	1 cut(s)	77
XceI	RCATGY	1 cut(s)	137
XmiI	GTMKAC	1 cut(s)	247
XmnI	GAANNNNTTC	2 cut(s)	341, 357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.