pycom14g16310

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0011434
Physical Location & Seq
Reverse (-)
18623683 .. 18626023
2341 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1200 bp
ATGTTCAGGACATGCGCGCATAAGAACGCGATTAGGGGAGATTCCGTCGTTAAGGCGCGTGTGGCAGAATTTGAGTTTGCCTTGTGGGTATTCCTACAGTTTTCCCAAGAAGAATTTCGAGAAATCAATCGATTCATCGATCGAATGGAGGAGCCACAATCTGCTCAATCTGCCCAGTCTGGAAAGCTTCTTCGGTATGCTCTCCGTTCGGGGACTAAATCGAAGGAGGAGAAGCCGCCGGTGGCGGCCACTGAACCCTCCTCTAACAATTCTGCCACCAAGAGGGGAAGGCCTGCATCAAATATGAGTAAAAGTGTGGGTGTTCTTGATCTCTCTGGCAAGGACAAGCCTGCCAAGCCGACCCGAAGGTTTTCCATTCCTTCCAAGCCGCCCACTACTCCAGCTCCGAAAATTGGTGGCAACATCACTGTGATTTCCGAGGCTAGATCAAGGAGGTCTGTGAGAAGTGACTCCCCTGCTTCTTCTGATGTTTCTAGACCAACAAGCCGGAAGAAGTTCAATGTTCTGGCCTCACCATCTTACTGGCTGCAGCAGATTAAGCTGTCTGAGGCTGCTGGCAAGCACTCGATTTCACTCGGGTTTTTCAAACTAGCCTTGGAGGCTGAATGTGAGTCTCTTCAACTGCGTTATGAGCTCAAATCTTATGTTGATCGCTACGAGCTTAGTGACCTTGAAGACCCTCTGAAGGAATTACTGGAGAGCAAAAGCGTTGCAGTAAATGAGCAGGCTCAGGTCTCCGAAACCTGTTCTCAGGTGCCCGAAGAGGGGACCCGATCTTCTGATGATGATGCCAAGAGCTGCTCTTCTACAATGGCAAGTGGGAAACTGAAACCCAAGTCATTGAACATTAAAGCTGCTCAAGTTTCTCCAGAGAAGGCCACAGCCAGGAAGGAGATTACCTTGAAAAGCACTCCGGCAGCCAGGACCAGGTCATCTTCGGTGAAGAATACTTCGAATTCAGGACCTGTATCTGACAATGGAGCTCGCGTGTCTACTGTGAAGAAACCCCAGAAGCCAAATGTGCAAGATTCTAACAAAGTAAAGGACAGGAAGAAGAAGCAGGGGAATCAAACCGCTTGTGAACAAGACTCAATTAACCCTGCCGCAGAAGGACTTCAGGAGAACAAAGAAAACCAGGATGCTCCCTCGACGGAAGCTATCAATGTGACTGAAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

400

Amino Acids

43.64

Weight (kDa)

9.53

Isoelectric Point (pI)

62.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011434)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62550
fragaria_vesca FvH4_5g15300 FvH4_5g15300 FvH4_5g15300
malus_domestica MD01G1041800.v1.1 MD06G1189400.v1.1 MD14G1196400.v1.1
prunus_persica Prupe.5G188200_v2.0.a1
pyrus_communis pycom06g16830 pycom14g16310
rosa_chinensis RchiOBHm_Chr7g0180761
rosa_laevigata RLG00000005232
rosa_multiflora Rmu_sc0007457.1_g000012
rosa_roxburghii Rroxscaffold_3G00272560
rosa_rugosa Rorug06G0435800
rosa_samantha Rh7AG037500 Rh7BG037200 Rh7CG038900 Rh7DG037400
rosa_wichuraiana Rw7G003090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 775
AccI GTMKAC 1 cut(s) 1013
AccII CGCG 4 cut(s) 17, 29, 58, 1008
AciI CCGC 5 cut(s) 236, 245, 389, 1095, 1125
AcoI YGGCCR 1 cut(s) 246
AcsI RAATTY 3 cut(s) 68, 113, 976
AcuI CTGAAG 2 cut(s) 725, 1121
AfiI CCNNNNNNNGG 7 cut(s) 282, 413, 706, 785, 786, 906, 948
AgsI TTSAA 6 cut(s) 520, 607, 641, 695, 865, 925
AjnI CCWGG 4 cut(s) 905, 941, 947, 1155
AjuI GAANNNNNNNTTGG 2 cut(s) 99, 131
AluBI AGCT 9 cut(s) 187, 404, 562, 655, 682, 819, 875, 1004, 1178
AluI AGCT 9 cut(s) 187, 404, 562, 655, 682, 819, 875, 1004, 1178
Alw21I GWGCWC 2 cut(s) 657, 1006
Alw26I GTCTC 2 cut(s) 639, 760
AlwNI CAGNNNCTG 1 cut(s) 986
Ama87I CYCGRG 1 cut(s) 596
AoxI GGCC 4 cut(s) 246, 290, 528, 897
ApeKI GCWGC 6 cut(s) 547, 550, 572, 819, 875, 938
ApoI RAATTY 3 cut(s) 68, 113, 976
Asp700I GAANNNNTTC 4 cut(s) 114, 370, 515, 1134
AspLEI GCGC 3 cut(s) 17, 19, 58
AspS9I GGNCC 3 cut(s) 789, 945, 983
AsuHPI GGTGA 2 cut(s) 525, 973
AsuII TTCGAA 1 cut(s) 974
AvaI CYCGRG 1 cut(s) 596
AvaII GGWCC 3 cut(s) 789, 945, 983
BaeGI GKGCMC 1 cut(s) 780
BanI GGYRCC 1 cut(s) 775
BanII GRGCYC 2 cut(s) 657, 1006
BbsI GAAGAC 1 cut(s) 702
Bbv12I GWGCWC 2 cut(s) 657, 1006
BbvI GCAGC 6 cut(s) 534, 559, 562, 806, 862, 950
BccI CCATC 1 cut(s) 544
BciT130I CCWGG 4 cut(s) 907, 943, 949, 1157
BcoDI GTCTC 2 cut(s) 639, 760
BfaI CTAG 3 cut(s) 444, 495, 611
BfmI CTRYAG 2 cut(s) 95, 548
BglI GCCNNNNNGGC 1 cut(s) 620
Bme1390I CCNGG 4 cut(s) 907, 943, 949, 1157
Bme18I GGWCC 3 cut(s) 789, 945, 983
BmeT110I CYCGRG 1 cut(s) 596
BmgT120I GGNCC 3 cut(s) 789, 945, 983
BmiI GGNNCC 4 cut(s) 153, 777, 790, 791
BmrFI CCNGG 4 cut(s) 907, 943, 949, 1157
BmrI ACTGGG 1 cut(s) 169
BmsI GCATC 3 cut(s) 305, 799, 1150
BmuI ACTGGG 1 cut(s) 169
BpiI GAAGAC 1 cut(s) 702
BpmI CTGGAG 3 cut(s) 384, 737, 873
Bpu10I CCTNAGC 1 cut(s) 750
Bpu14I TTCGAA 1 cut(s) 974
BpuEI CTTGAG 1 cut(s) 864
Bsa29I ATCGAT 2 cut(s) 130, 138
BsaI GGTCTC 1 cut(s) 760
BsaJI CCNNGG 2 cut(s) 438, 615
BsaXI ACNNNNNCTCC 6 cut(s) 30, 60, 388, 418, 993, 1023
Bsc4I CCNNNNNNNGG 7 cut(s) 282, 413, 706, 785, 786, 906, 948
Bse118I RCCGGY 1 cut(s) 238
Bse1I ACTGG 3 cut(s) 175, 548, 720
BseBI CCWGG 4 cut(s) 907, 943, 949, 1157
BseCI ATCGAT 2 cut(s) 130, 138
BseDI CCNNGG 2 cut(s) 438, 615
BseGI GGATG 1 cut(s) 1165
BseLI CCNNNNNNNGG 7 cut(s) 282, 413, 706, 785, 786, 906, 948
BseMII CTCAG 3 cut(s) 558, 764, 785
BseNI ACTGG 3 cut(s) 175, 548, 720
BsePI GCGCGC 1 cut(s) 15
BseRI GAGGAG 3 cut(s) 164, 242, 250
BseSI GKGCMC 1 cut(s) 780
BseXI GCAGC 6 cut(s) 534, 559, 562, 806, 862, 950
Bsh1236I CGCG 4 cut(s) 17, 29, 58, 1008
Bsh1285I CGRYCG 1 cut(s) 142
BshFI GGCC 4 cut(s) 248, 292, 530, 899
BshNI GGYRCC 1 cut(s) 775
BshVI ATCGAT 2 cut(s) 130, 138
BsiEI CGRYCG 1 cut(s) 142
BsiHKAI GWGCWC 2 cut(s) 657, 1006
BsiHKCI CYCGRG 1 cut(s) 596
BsiSI CCGG 3 cut(s) 239, 508, 935
BslFI GGGAC 2 cut(s) 226, 802
BslI CCNNNNNNNGG 7 cut(s) 282, 413, 706, 785, 786, 906, 948
BsmAI GTCTC 2 cut(s) 639, 760
BsmFI GGGAC 2 cut(s) 226, 802
BsnI GGCC 4 cut(s) 248, 292, 530, 899
Bso31I GGTCTC 1 cut(s) 760
BsoBI CYCGRG 1 cut(s) 596
Bsp119I TTCGAA 1 cut(s) 974
Bsp1286I GDGCHC 3 cut(s) 657, 780, 1006
Bsp143I GATC 5 cut(s) 139, 328, 446, 670, 794
BspACI CCGC 5 cut(s) 236, 245, 389, 1095, 1125
BspANI GGCC 4 cut(s) 248, 292, 530, 899
BspCNI CTCAG 3 cut(s) 559, 763, 784
BspDI ATCGAT 2 cut(s) 130, 138
BspFNI CGCG 4 cut(s) 17, 29, 58, 1008
BspLI GGNNCC 4 cut(s) 153, 777, 790, 791
BspMAI CTGCAG 1 cut(s) 552
BspQI GCTCTTC 1 cut(s) 829
BspT104I TTCGAA 1 cut(s) 974
BspT107I GGYRCC 1 cut(s) 775
BspTNI GGTCTC 1 cut(s) 760
BsrFI RCCGGY 1 cut(s) 238
BsrI ACTGG 3 cut(s) 175, 548, 720
BssAI RCCGGY 1 cut(s) 238
BssECI CCNNGG 2 cut(s) 438, 615
BssHII GCGCGC 1 cut(s) 15
BssMI GATC 5 cut(s) 139, 328, 446, 670, 794
BssT1I CCWWGG 1 cut(s) 615
Bst2UI CCWGG 4 cut(s) 907, 943, 949, 1157
Bst4CI ACNGT 3 cut(s) 99, 430, 1018
Bst6I CTCTTC 3 cut(s) 642, 777, 829
BstBI TTCGAA 1 cut(s) 974
BstC8I GCNNGC 7 cut(s) 17, 294, 351, 577, 581, 747, 1006
BstDEI CTNAG 4 cut(s) 567, 683, 750, 771
BstF5I GGATG 1 cut(s) 1165
BstFNI CGCG 4 cut(s) 17, 29, 58, 1008
BstHHI GCGC 3 cut(s) 17, 19, 58
BstKTI GATC 5 cut(s) 142, 331, 449, 673, 797
BstMAI GTCTC 2 cut(s) 639, 760
BstMBI GATC 5 cut(s) 139, 328, 446, 670, 794
BstMCI CGRYCG 1 cut(s) 142
BstMWI GCNNNNNNNGC 7 cut(s) 62, 170, 355, 559, 620, 652, 1042
BstNI CCWGG 4 cut(s) 907, 943, 949, 1157
BstNSI RCATGY 1 cut(s) 15
BstSCI CCNGG 4 cut(s) 905, 941, 947, 1155
BstSFI CTRYAG 2 cut(s) 95, 548
BstSLI GKGCMC 1 cut(s) 780
BstUI CGCG 4 cut(s) 17, 29, 58, 1008
BstV1I GCAGC 6 cut(s) 534, 559, 562, 806, 862, 950
BstV2I GAAGAC 1 cut(s) 702
BstXI CCANNNNNNTGG 1 cut(s) 543
Bsu15I ATCGAT 2 cut(s) 130, 138
BsuRI GGCC 4 cut(s) 248, 292, 530, 899
BsuTUI ATCGAT 2 cut(s) 130, 138
BtsCI GGATG 1 cut(s) 1165
BtsIMutI CAGTG 2 cut(s) 249, 426
Cac8I GCNNGC 7 cut(s) 17, 294, 351, 577, 581, 747, 1006
CaiI CAGNNNCTG 1 cut(s) 986
CfoI GCGC 3 cut(s) 17, 19, 58
Cfr10I RCCGGY 1 cut(s) 238
Cfr13I GGNCC 3 cut(s) 789, 945, 983
ClaI ATCGAT 2 cut(s) 130, 138
CsiI ACCWGGT 1 cut(s) 947
CviAII CATG 1 cut(s) 12
DdeI CTNAG 4 cut(s) 567, 683, 750, 771
DpnI GATC 5 cut(s) 141, 330, 448, 672, 796
DpnII GATC 5 cut(s) 139, 328, 446, 670, 794
EaeI YGGCCR 1 cut(s) 246
Eam1104I CTCTTC 3 cut(s) 642, 777, 829
EarI CTCTTC 3 cut(s) 642, 777, 829
Ecl136II GAGCTC 2 cut(s) 655, 1004
Eco130I CCWWGG 1 cut(s) 615
Eco147I AGGCCT 1 cut(s) 292
Eco24I GRGCYC 2 cut(s) 657, 1006
Eco31I GGTCTC 1 cut(s) 760
Eco47I GGWCC 3 cut(s) 789, 945, 983
Eco53kI GAGCTC 2 cut(s) 655, 1004
Eco57I CTGAAG 2 cut(s) 725, 1121
Eco88I CYCGRG 1 cut(s) 596
EcoICRI GAGCTC 2 cut(s) 655, 1004
EcoO109I RGGNCCY 2 cut(s) 789, 983
EcoRI GAATTC 1 cut(s) 976
EcoRII CCWGG 4 cut(s) 905, 941, 947, 1155
EcoT14I CCWWGG 1 cut(s) 615
EcoT38I GRGCYC 2 cut(s) 657, 1006
ErhI CCWWGG 1 cut(s) 615
FaeI CATG 1 cut(s) 15
FaiI YATR 6 cut(s) 13, 21, 198, 305, 651, 666
FaqI GGGAC 2 cut(s) 226, 802
FatI CATG 1 cut(s) 11
FblI GTMKAC 1 cut(s) 1013
FokI GGATG 1 cut(s) 1172
FriOI GRGCYC 2 cut(s) 657, 1006
FspBI CTAG 3 cut(s) 444, 495, 611
GlaI GCGC 3 cut(s) 16, 18, 57
GsuI CTGGAG 3 cut(s) 384, 737, 873
HaeIII GGCC 4 cut(s) 248, 292, 530, 899
HapII CCGG 3 cut(s) 239, 508, 935
HhaI GCGC 3 cut(s) 17, 19, 58
Hin1II CATG 1 cut(s) 15
Hin6I GCGC 3 cut(s) 15, 17, 56
HinP1I GCGC 3 cut(s) 15, 17, 56
HindIII AAGCTT 1 cut(s) 185
HinfI GANTC 7 cut(s) 41, 132, 470, 632, 1049, 1087, 1109
HpaII CCGG 3 cut(s) 239, 508, 935
HphI GGTGA 2 cut(s) 525, 973
Hpy166II GTNNAC 2 cut(s) 1014, 1103
Hpy188I TCNGA 8 cut(s) 408, 439, 487, 568, 705, 760, 802, 994
Hpy188III TCNNGA 8 cut(s) 7, 119, 180, 326, 495, 890, 981, 1139
Hpy8I GTNNAC 2 cut(s) 1014, 1103
Hpy99I CGWCG 2 cut(s) 50, 1174
HpyAV CCTTC 8 cut(s) 217, 282, 360, 390, 700, 889, 904, 1124
HpyCH4III ACNGT 3 cut(s) 99, 430, 1018
HpyCH4V TGCA 4 cut(s) 296, 550, 734, 1045
HpyF10VI GCNNNNNNNGC 7 cut(s) 62, 170, 355, 559, 620, 652, 1042
HpyF3I CTNAG 4 cut(s) 567, 683, 750, 771
Hsp92II CATG 1 cut(s) 15
HspAI GCGC 3 cut(s) 15, 17, 56
KflI GGGWCCC 1 cut(s) 789
Kzo9I GATC 5 cut(s) 139, 328, 446, 670, 794
LguI GCTCTTC 1 cut(s) 829
LmnI GCTCC 4 cut(s) 151, 409, 1001, 1168
Lsp1109I GCAGC 6 cut(s) 534, 559, 562, 806, 862, 950
LweI GCATC 3 cut(s) 305, 799, 1150
MabI ACCWGGT 1 cut(s) 947
MaeI CTAG 3 cut(s) 444, 495, 611
MaeIII GTNAC 3 cut(s) 467, 686, 1186
MalI GATC 5 cut(s) 141, 330, 448, 672, 796
MboI GATC 5 cut(s) 139, 328, 446, 670, 794
MhlI GDGCHC 3 cut(s) 657, 780, 1006
MluCI AATT 7 cut(s) 68, 113, 268, 411, 710, 976, 1113
MlyI GAGTC 3 cut(s) 464, 641, 1103
MroXI GAANNNNTTC 4 cut(s) 114, 370, 515, 1134
MseI TTAA 4 cut(s) 51, 558, 870, 1116
MslI CAYNNNNRTG 1 cut(s) 428
MspI CCGG 3 cut(s) 239, 508, 935
MspR9I CCNGG 4 cut(s) 907, 943, 949, 1157
MvaI CCWGG 4 cut(s) 907, 943, 949, 1157
MvnI CGCG 4 cut(s) 17, 29, 58, 1008
MwoI GCNNNNNNNGC 7 cut(s) 62, 170, 355, 559, 620, 652, 1042
NdeII GATC 5 cut(s) 139, 328, 446, 670, 794
NlaIII CATG 1 cut(s) 15
NlaIV GGNNCC 4 cut(s) 153, 777, 790, 791
NmuCI GTSAC 3 cut(s) 467, 686, 1186
NspI RCATGY 1 cut(s) 15
NspV TTCGAA 1 cut(s) 974
PauI GCGCGC 1 cut(s) 15
PceI AGGCCT 1 cut(s) 292
PciSI GCTCTTC 1 cut(s) 829
PdmI GAANNNNTTC 4 cut(s) 114, 370, 515, 1134
PfeI GAWTC 4 cut(s) 41, 132, 1049, 1087
PflFI GACNNNGTC 1 cut(s) 949
Ple19I CGATCG 1 cut(s) 142
PleI GAGTC 3 cut(s) 464, 640, 1103
PpsI GAGTC 3 cut(s) 464, 640, 1103
PpuMI RGGWCCY 2 cut(s) 789, 983
Psp124BI GAGCTC 2 cut(s) 657, 1006
Psp5II RGGWCCY 2 cut(s) 789, 983
Psp6I CCWGG 4 cut(s) 905, 941, 947, 1155
PspGI CCWGG 4 cut(s) 905, 941, 947, 1155
PspN4I GGNNCC 4 cut(s) 153, 777, 790, 791
PspPI GGNCC 3 cut(s) 789, 945, 983
PspPPI RGGWCCY 2 cut(s) 789, 983
PstI CTGCAG 1 cut(s) 552
PstNI CAGNNNCTG 1 cut(s) 986
PsyI GACNNNGTC 1 cut(s) 949
PteI GCGCGC 1 cut(s) 15
PvuI CGATCG 1 cut(s) 142
RseI CAYNNNNRTG 1 cut(s) 428
SacI GAGCTC 2 cut(s) 657, 1006
SapI GCTCTTC 1 cut(s) 829
SaqAI TTAA 4 cut(s) 51, 558, 870, 1116
Sau3AI GATC 5 cut(s) 139, 328, 446, 670, 794
Sau96I GGNCC 3 cut(s) 789, 945, 983
SchI GAGTC 3 cut(s) 464, 641, 1103
ScrFI CCNGG 4 cut(s) 907, 943, 949, 1157
SduI GDGCHC 3 cut(s) 657, 780, 1006
SexAI ACCWGGT 1 cut(s) 947
SfaNI GCATC 3 cut(s) 305, 799, 1150
SfcI CTRYAG 2 cut(s) 95, 548
SfuI TTCGAA 1 cut(s) 974
SgrAI CRCCGGYG 1 cut(s) 238
SinI GGWCC 3 cut(s) 789, 945, 983
SmiMI CAYNNNNRTG 1 cut(s) 428
SmlI CTYRAG 1 cut(s) 879
SmoI CTYRAG 1 cut(s) 879
Sse9I AATT 7 cut(s) 68, 113, 268, 411, 710, 976, 1113
SseBI AGGCCT 1 cut(s) 292
SsiI CCGC 5 cut(s) 236, 245, 389, 1095, 1125
SspMI CTAG 3 cut(s) 444, 495, 611
SstI GAGCTC 2 cut(s) 657, 1006
StuI AGGCCT 1 cut(s) 292
StyD4I CCNGG 4 cut(s) 905, 941, 947, 1155
StyI CCWWGG 1 cut(s) 615
TaaI ACNGT 3 cut(s) 99, 430, 1018
TaqI TCGA 8 cut(s) 118, 130, 138, 142, 221, 587, 974, 1169
TasI AATT 7 cut(s) 68, 113, 268, 411, 710, 976, 1113
TauI GCSGC 4 cut(s) 238, 248, 391, 1127
TfiI GAWTC 4 cut(s) 41, 132, 1049, 1087
Tru1I TTAA 4 cut(s) 51, 558, 870, 1116
Tru9I TTAA 4 cut(s) 51, 558, 870, 1116
TscAI CASTG 2 cut(s) 256, 433
TseFI GTSAC 3 cut(s) 467, 686, 1186
TseI GCWGC 6 cut(s) 547, 550, 572, 819, 875, 938
Tsp45I GTSAC 3 cut(s) 467, 686, 1186
TspDTI ATGAA 1 cut(s) 124
TspGWI ACGGA 3 cut(s) 34, 194, 1187
TspRI CASTG 2 cut(s) 256, 433
Tth111I GACNNNGTC 1 cut(s) 949
VpaK11BI GGWCC 3 cut(s) 789, 945, 983
XapI RAATTY 3 cut(s) 68, 113, 976
XbaI TCTAGA 1 cut(s) 494
XceI RCATGY 1 cut(s) 15
XmiI GTMKAC 1 cut(s) 1013
XmnI GAANNNNTTC 4 cut(s) 114, 370, 515, 1134
XspI CTAG 3 cut(s) 444, 495, 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.