pycom14g17320

UDP-glucose 6-dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0001872
Physical Location & Seq
Reverse (-)
19305637 .. 19306911
1275 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1182 bp
ATGCAGAGGAAAGAACCTCTTCTTCAGCACTTTAACACCCCAACGAAAACCAGGGGTCTTGGAGCCGGCAAGGCTGCTGACTTGACATACTGGGAAAGCGCAATTGTTGTTGAGAAATCAACTGTCCCAGTGAAAACCGCCGAGGCGATTGAAAAGATTTTGAGACATAATAGCAAGGGAATCAAGTACCAGATTCTCTCCAACCCGGAGTTTCTTGCCGAGGGGACAGCGATTGAGGATCTTTTCAAGCCCGACCGCGTGTTGATTGGAGGGAGGGAAACCCCGGATGGCCAGAAGGCAATCCAGGCATTGAAGGCAGTGTACGCGAATTGGGTTCCGGAGGACAGAATCATAACAACCAATCTGTGGTCAGCTGAGCTATCAAAGCTCGCCGCGAATGCCTTCCTGGCACAGAGGATCTCGTCTGTGAATGCAATGTCAGCTCTCTGTGAGGCCACCGGAGCAAATATCTCAGAAGTTTCCCATGCTGTTGGCAAGGACACCAGAATTGGACCGAAATTTCTCAATGCCAGCGTTGGATTTGGCGGGTCTTGCTTTCAGAAGGACATTCTCAACTTGGTCTATATCTGCGAATGCAATGGACTTCCTGAAGTTGCAGACTACTGGAAACAAGTGATCCAGGTGAACGACTACCAAAAGAGCCGCTTCGTGAACAGGGTTGTCTCTTCGATGTTCAACACTGTTTCAGGTAAAAAGATTGCGATTCTTGGATTCGCATTCAAGAAAGACACCGGGGACACAAGGGAGACCCCTGCCATTGATGTTTGCAACGGGCTGTTGGGGGACAAGGCGCACTTGAGCATATATGATCTGCAGGTTACCGAGGAACAGATTCGGATTGATCTTTCGATGAAAAAGTTTGATTGGGACCATCCAATTCATCTGCAGCCAATGAGCCCTGCCGTGGCCAAGGAAGTGAGCGTCGCTTGGGACGCTTACGAGGCAGCAAAGGGCGCTCATGGGATCTGCATTCTCACCGAGTGGGACGAGTTCAAGACACTCGATTACAAGAAGATTTACGACAGCATGCAGAAGCCTGCATTTTTGTTCGATGGGAGAAATGTGGTTGATGCTGTGAAGCTGAGAGAGATCGGATTCATCGTGTATTCGATCGGGAAGCCGTTGGATTCTTGGCTCAAGGACATGCCTGCTGTGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00040 ko00053 ko00520 ko01100 map00040 map00053 map00520 map01100
Pfam Domains
Protein Families
UDPG_MGDP_dh UDPG_MGDP_dh_C UDPG_MGDP_dh_N

Protein Analysis

394

Amino Acids

43.58

Weight (kDa)

6.68

Isoelectric Point (pI)

28.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPG_MGDP_dh_N PF03721 13 - 98 1e-19 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
UDPG_MGDP_dh PF00984 123 - 217 1.4e-32 UDP-glucose/GDP-mannose dehydrogenase family, central domain
UDPG_MGDP_dh_C PF03720 241 - 364 1.8e-28 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 826
AccB7I CCANNNNNTGG 1 cut(s) 366
AccII CGCG 3 cut(s) 258, 326, 395
AccIII TCCGGA 1 cut(s) 337
AciI CCGC 5 cut(s) 138, 256, 393, 546, 664
AclWI GGATC 4 cut(s) 246, 425, 631, 992
AcoI YGGCCR 2 cut(s) 289, 927
AcsI RAATTY 1 cut(s) 518
AcuI CTGAAG 2 cut(s) 8, 630
AdeI CACNNNGTG 1 cut(s) 1002
AfaI GTAC 2 cut(s) 188, 323
AfiI CCNNNNNNNGG 2 cut(s) 366, 925
AgsI TTSAA 6 cut(s) 152, 247, 313, 697, 742, 1015
AjnI CCWGG 4 cut(s) 50, 303, 405, 639
AluBI AGCT 5 cut(s) 374, 379, 388, 443, 1102
AluI AGCT 5 cut(s) 374, 379, 388, 443, 1102
Alw26I GTCTC 3 cut(s) 157, 688, 761
AlwI GGATC 4 cut(s) 246, 425, 631, 992
Aor13HI TCCGGA 1 cut(s) 337
AoxI GGCC 3 cut(s) 289, 453, 927
ApeKI GCWGC 3 cut(s) 74, 907, 965
ApoI RAATTY 1 cut(s) 518
Asp700I GAANNNNTTC 3 cut(s) 18, 401, 852
AspLEI GCGC 3 cut(s) 101, 814, 977
AspS9I GGNCC 2 cut(s) 512, 889
AsuC2I CCSGG 3 cut(s) 206, 284, 754
AsuHPI GGTGA 2 cut(s) 655, 988
AvaII GGWCC 2 cut(s) 512, 889
BalI TGGCCA 2 cut(s) 291, 929
BanII GRGCYC 1 cut(s) 920
BarI GAAGNNNNNNTAC 2 cut(s) 305, 337
BbvI GCAGC 3 cut(s) 61, 919, 977
BccI CCATC 3 cut(s) 281, 900, 1067
BceAI ACGGC 2 cut(s) 908, 1126
BciT130I CCWGG 4 cut(s) 52, 305, 407, 641
BcnI CCSGG 3 cut(s) 206, 284, 754
BcoDI GTCTC 3 cut(s) 157, 688, 761
BfmI CTRYAG 2 cut(s) 833, 905
BfoI RGCGCY 1 cut(s) 978
BfuAI ACCTGC 1 cut(s) 826
BglI GCCNNNNNGGC 2 cut(s) 71, 407
BisI GCNGC 5 cut(s) 75, 393, 664, 908, 966
BlpI GCTNAGC 1 cut(s) 375
BlsI GCNGC 5 cut(s) 76, 394, 665, 909, 967
Bme1390I CCNGG 7 cut(s) 52, 206, 284, 305, 407, 641, 754
Bme18I GGWCC 2 cut(s) 512, 889
BmgT120I GGNCC 2 cut(s) 512, 889
BmiI GGNNCC 3 cut(s) 64, 336, 890
BmrFI CCNGG 7 cut(s) 52, 206, 284, 305, 407, 641, 754
BmrI ACTGGG 2 cut(s) 100, 122
BmsI GCATC 1 cut(s) 1081
BmuI ACTGGG 2 cut(s) 100, 122
Bpu1102I GCTNAGC 1 cut(s) 375
BpuEI CTTGAG 2 cut(s) 838, 1142
BpuMI CCSGG 3 cut(s) 206, 284, 754
BsaI GGTCTC 1 cut(s) 761
BsaJI CCNNGG 8 cut(s) 51, 141, 219, 282, 753, 843, 924, 930
BsaWI WCCGGW 2 cut(s) 337, 458
Bsc4I CCNNNNNNNGG 2 cut(s) 366, 925
Bse118I RCCGGY 1 cut(s) 65
Bse1I ACTGG 3 cut(s) 95, 128, 629
Bse3DI GCAATG 2 cut(s) 441, 604
BseAI TCCGGA 1 cut(s) 337
BseBI CCWGG 4 cut(s) 52, 305, 407, 641
BseDI CCNNGG 8 cut(s) 51, 141, 219, 282, 753, 843, 924, 930
BseGI GGATG 2 cut(s) 292, 892
BseLI CCNNNNNNNGG 2 cut(s) 366, 925
BseMI GCAATG 2 cut(s) 441, 604
BseMII CTCAG 3 cut(s) 366, 486, 1094
BseNI ACTGG 3 cut(s) 95, 128, 629
BseXI GCAGC 3 cut(s) 61, 919, 977
Bsh1236I CGCG 3 cut(s) 258, 326, 395
Bsh1285I CGRYCG 2 cut(s) 256, 1134
BshFI GGCC 3 cut(s) 291, 455, 929
BsiEI CGRYCG 2 cut(s) 256, 1134
BsiSI CCGG 6 cut(s) 66, 206, 284, 338, 459, 753
BslFI GGGAC 7 cut(s) 110, 238, 770, 818, 902, 965, 1019
BslI CCNNNNNNNGG 2 cut(s) 366, 925
BsmAI GTCTC 3 cut(s) 157, 688, 761
BsmFI GGGAC 7 cut(s) 110, 238, 770, 818, 902, 965, 1019
BsmI GAATGC 5 cut(s) 403, 436, 599, 737, 990
BsnI GGCC 3 cut(s) 291, 455, 929
Bso31I GGTCTC 1 cut(s) 761
Bsp1286I GDGCHC 1 cut(s) 920
Bsp13I TCCGGA 1 cut(s) 337
Bsp143I GATC 8 cut(s) 238, 417, 636, 829, 862, 984, 1110, 1131
Bsp1720I GCTNAGC 1 cut(s) 375
BspACI CCGC 5 cut(s) 138, 256, 393, 546, 664
BspANI GGCC 3 cut(s) 291, 455, 929
BspCNI CTCAG 3 cut(s) 367, 485, 1095
BspEI TCCGGA 1 cut(s) 337
BspFNI CGCG 3 cut(s) 258, 326, 395
BspLI GGNNCC 3 cut(s) 64, 336, 890
BspMAI CTGCAG 2 cut(s) 837, 909
BspMI ACCTGC 1 cut(s) 826
BspPI GGATC 4 cut(s) 246, 425, 631, 992
BspTNI GGTCTC 1 cut(s) 761
BsrDI GCAATG 2 cut(s) 441, 604
BsrFI RCCGGY 1 cut(s) 65
BsrI ACTGG 3 cut(s) 95, 128, 629
BssAI RCCGGY 1 cut(s) 65
BssECI CCNNGG 8 cut(s) 51, 141, 219, 282, 753, 843, 924, 930
BssMI GATC 8 cut(s) 238, 417, 636, 829, 862, 984, 1110, 1131
BssT1I CCWWGG 1 cut(s) 930
Bst2UI CCWGG 4 cut(s) 52, 305, 407, 641
Bst4CI ACNGT 2 cut(s) 124, 703
Bst6I CTCTTC 2 cut(s) 24, 691
BstC8I GCNNGC 6 cut(s) 67, 390, 532, 1049, 1059, 1170
BstDEI CTNAG 3 cut(s) 375, 472, 1103
BstDSI CCRYGG 1 cut(s) 924
BstEII GGTNACC 1 cut(s) 838
BstF5I GGATG 2 cut(s) 292, 892
BstFNI CGCG 3 cut(s) 258, 326, 395
BstH2I RGCGCY 1 cut(s) 978
BstHHI GCGC 3 cut(s) 101, 814, 977
BstKTI GATC 8 cut(s) 241, 420, 639, 832, 865, 987, 1113, 1134
BstMAI GTCTC 3 cut(s) 157, 688, 761
BstMBI GATC 8 cut(s) 238, 417, 636, 829, 862, 984, 1110, 1131
BstMCI CGRYCG 2 cut(s) 256, 1134
BstNI CCWGG 4 cut(s) 52, 305, 407, 641
BstNSI RCATGY 2 cut(s) 1051, 1168
BstPI GGTNACC 1 cut(s) 838
BstSCI CCNGG 7 cut(s) 50, 204, 282, 303, 405, 639, 752
BstSFI CTRYAG 2 cut(s) 833, 905
BstUI CGCG 3 cut(s) 258, 326, 395
BstV1I GCAGC 3 cut(s) 61, 919, 977
BstX2I RGATCY 3 cut(s) 238, 417, 984
BstXI CCANNNNNNTGG 1 cut(s) 491
BstYI RGATCY 3 cut(s) 238, 417, 984
BsuRI GGCC 3 cut(s) 291, 455, 929
BtgI CCRYGG 1 cut(s) 924
BtsCI GGATG 2 cut(s) 292, 892
BtsI GCAGTG 1 cut(s) 324
BtsIMutI CAGTG 3 cut(s) 135, 324, 699
BveI ACCTGC 1 cut(s) 826
Cac8I GCNNGC 6 cut(s) 67, 390, 532, 1049, 1059, 1170
CfoI GCGC 3 cut(s) 101, 814, 977
Cfr10I RCCGGY 1 cut(s) 65
Cfr13I GGNCC 2 cut(s) 512, 889
CseI GACGC 2 cut(s) 931, 962
Csp6I GTAC 2 cut(s) 187, 322
CviAII CATG 4 cut(s) 485, 980, 1048, 1165
CviQI GTAC 2 cut(s) 187, 322
DdeI CTNAG 3 cut(s) 375, 472, 1103
DpnI GATC 8 cut(s) 240, 419, 638, 831, 864, 986, 1112, 1133
DpnII GATC 8 cut(s) 238, 417, 636, 829, 862, 984, 1110, 1131
DraIII CACNNNGTG 1 cut(s) 1002
EaeI YGGCCR 2 cut(s) 289, 927
Eam1104I CTCTTC 2 cut(s) 24, 691
EarI CTCTTC 2 cut(s) 24, 691
Eco130I CCWWGG 1 cut(s) 930
Eco24I GRGCYC 1 cut(s) 920
Eco31I GGTCTC 1 cut(s) 761
Eco47I GGWCC 2 cut(s) 512, 889
Eco57I CTGAAG 2 cut(s) 8, 630
Eco91I GGTNACC 1 cut(s) 838
EcoO65I GGTNACC 1 cut(s) 838
EcoRII CCWGG 4 cut(s) 50, 303, 405, 639
EcoT14I CCWWGG 1 cut(s) 930
EcoT38I GRGCYC 1 cut(s) 920
ErhI CCWWGG 1 cut(s) 930
FaeI CATG 4 cut(s) 488, 983, 1051, 1168
FalI AAGNNNNNCTT 5 cut(s) 35, 650, 682, 800, 832
FaqI GGGAC 7 cut(s) 110, 238, 770, 818, 902, 965, 1019
FatI CATG 4 cut(s) 484, 979, 1047, 1164
FauI CCCGC 1 cut(s) 539
Fnu4HI GCNGC 5 cut(s) 75, 393, 664, 908, 966
FokI GGATG 2 cut(s) 299, 879
FriOI GRGCYC 1 cut(s) 920
Fsp4HI GCNGC 5 cut(s) 75, 393, 664, 908, 966
GlaI GCGC 3 cut(s) 100, 813, 976
GluI GCNGC 5 cut(s) 75, 393, 664, 908, 966
HaeII RGCGCY 1 cut(s) 978
HaeIII GGCC 3 cut(s) 291, 455, 929
HapII CCGG 6 cut(s) 66, 206, 284, 338, 459, 753
HgaI GACGC 2 cut(s) 931, 962
HhaI GCGC 3 cut(s) 101, 814, 977
Hin1II CATG 4 cut(s) 488, 983, 1051, 1168
Hin6I GCGC 3 cut(s) 99, 812, 975
HinP1I GCGC 3 cut(s) 99, 812, 975
HinfI GANTC 8 cut(s) 180, 193, 348, 724, 732, 853, 1116, 1148
HpaII CCGG 6 cut(s) 66, 206, 284, 338, 459, 753
HphI GGTGA 2 cut(s) 655, 988
Hpy166II GTNNAC 3 cut(s) 322, 646, 673
Hpy188I TCNGA 4 cut(s) 475, 561, 858, 1115
Hpy188III TCNNGA 6 cut(s) 338, 608, 670, 742, 1015, 1135
Hpy8I GTNNAC 3 cut(s) 322, 646, 673
Hpy99I CGWCG 1 cut(s) 947
HpyAV CCTTC 4 cut(s) 289, 307, 412, 556
HpyCH4III ACNGT 2 cut(s) 124, 703
HpyF3I CTNAG 3 cut(s) 375, 472, 1103
Hsp92II CATG 4 cut(s) 488, 983, 1051, 1168
HspAI GCGC 3 cut(s) 99, 812, 975
Kpn2I TCCGGA 1 cut(s) 337
KroI GCCGGC 1 cut(s) 65
KroNI GCCGGC 1 cut(s) 67
Kzo9I GATC 8 cut(s) 238, 417, 636, 829, 862, 984, 1110, 1131
LmnI GCTCC 2 cut(s) 62, 461
Lsp1109I GCAGC 3 cut(s) 61, 919, 977
LweI GCATC 1 cut(s) 1081
MaeIII GTNAC 1 cut(s) 838
MalI GATC 8 cut(s) 240, 419, 638, 831, 864, 986, 1112, 1133
MboI GATC 8 cut(s) 238, 417, 636, 829, 862, 984, 1110, 1131
MboII GAAGA 4 cut(s) 11, 14, 678, 1045
MfeI CAATTG 1 cut(s) 102
MflI RGATCY 3 cut(s) 238, 417, 984
MhlI GDGCHC 1 cut(s) 920
MlsI TGGCCA 2 cut(s) 291, 929
MluCI AATT 5 cut(s) 102, 328, 507, 518, 897
MluNI TGGCCA 2 cut(s) 291, 929
MmeI TCCRAC 3 cut(s) 225, 517, 1125
Mox20I TGGCCA 2 cut(s) 291, 929
MroI TCCGGA 1 cut(s) 337
MroNI GCCGGC 1 cut(s) 65
MroXI GAANNNNTTC 3 cut(s) 18, 401, 852
MscI TGGCCA 2 cut(s) 291, 929
MseI TTAA 1 cut(s) 33
Msp20I TGGCCA 2 cut(s) 291, 929
MspA1I CMGCKG 1 cut(s) 374
MspI CCGG 6 cut(s) 66, 206, 284, 338, 459, 753
MspR9I CCNGG 7 cut(s) 52, 206, 284, 305, 407, 641, 754
MunI CAATTG 1 cut(s) 102
Mva1269I GAATGC 5 cut(s) 403, 436, 599, 737, 990
MvaI CCWGG 4 cut(s) 52, 305, 407, 641
MvnI CGCG 3 cut(s) 258, 326, 395
NaeI GCCGGC 1 cut(s) 67
NciI CCSGG 3 cut(s) 206, 284, 754
NdeII GATC 8 cut(s) 238, 417, 636, 829, 862, 984, 1110, 1131
NgoMIV GCCGGC 1 cut(s) 65
NlaIII CATG 4 cut(s) 488, 983, 1051, 1168
NlaIV GGNNCC 3 cut(s) 64, 336, 890
NmeAIII GCCGAG 2 cut(s) 166, 244
NspI RCATGY 2 cut(s) 1051, 1168
PaeI GCATGC 1 cut(s) 1051
PcsI WCGNNNNNNNCGW 1 cut(s) 1119
PctI GAATGC 5 cut(s) 403, 436, 599, 737, 990
PdiI GCCGGC 1 cut(s) 67
PdmI GAANNNNTTC 3 cut(s) 18, 401, 852
PfeI GAWTC 8 cut(s) 180, 193, 348, 724, 732, 853, 1116, 1148
PflMI CCANNNNNTGG 1 cut(s) 366
PkrI GCNGC 5 cut(s) 76, 394, 665, 909, 967
Ple19I CGATCG 1 cut(s) 1134
Psp6I CCWGG 4 cut(s) 50, 303, 405, 639
PspEI GGTNACC 1 cut(s) 838
PspGI CCWGG 4 cut(s) 50, 303, 405, 639
PspN4I GGNNCC 3 cut(s) 64, 336, 890
PspPI GGNCC 2 cut(s) 512, 889
PstI CTGCAG 2 cut(s) 837, 909
PsuI RGATCY 3 cut(s) 238, 417, 984
PvuI CGATCG 1 cut(s) 1134
PvuII CAGCTG 1 cut(s) 374
RsaI GTAC 2 cut(s) 188, 323
RsaNI GTAC 2 cut(s) 187, 322
SaqAI TTAA 1 cut(s) 33
SatI GCNGC 5 cut(s) 75, 393, 664, 908, 966
Sau3AI GATC 8 cut(s) 238, 417, 636, 829, 862, 984, 1110, 1131
Sau96I GGNCC 2 cut(s) 512, 889
ScrFI CCNGG 7 cut(s) 52, 206, 284, 305, 407, 641, 754
SduI GDGCHC 1 cut(s) 920
SetI ASST 9 cut(s) 19, 376, 381, 390, 445, 645, 712, 840, 1104
SfaNI GCATC 1 cut(s) 1081
SfcI CTRYAG 2 cut(s) 833, 905
SinI GGWCC 2 cut(s) 512, 889
SmlI CTYRAG 2 cut(s) 817, 1157
SmoI CTYRAG 2 cut(s) 817, 1157
SphI GCATGC 1 cut(s) 1051
Sse9I AATT 5 cut(s) 102, 328, 507, 518, 897
SsiI CCGC 5 cut(s) 138, 256, 393, 546, 664
StyD4I CCNGG 7 cut(s) 50, 204, 282, 303, 405, 639, 752
StyI CCWWGG 1 cut(s) 930
TaaI ACNGT 2 cut(s) 124, 703
TaqI TCGA 5 cut(s) 689, 869, 1023, 1071, 1130
TaqII GACCGA 1 cut(s) 529
TasI AATT 5 cut(s) 102, 328, 507, 518, 897
TauI GCSGC 2 cut(s) 395, 666
TfiI GAWTC 8 cut(s) 180, 193, 348, 724, 732, 853, 1116, 1148
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TscAI CASTG 3 cut(s) 135, 324, 706
TseI GCWGC 3 cut(s) 74, 907, 965
TspDTI ATGAA 3 cut(s) 887, 890, 1108
TspRI CASTG 3 cut(s) 135, 324, 706
Van91I CCANNNNNTGG 1 cut(s) 366
VpaK11BI GGWCC 2 cut(s) 512, 889
XapI RAATTY 1 cut(s) 518
XceI RCATGY 2 cut(s) 1051, 1168
XmnI GAANNNNTTC 3 cut(s) 18, 401, 852
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.