Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0008271

Physical Location & Seq

Genomic Coordinates Forward (+)

19385596 .. 19389554

Gene Structure 3959 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGTTGCCCTTGCTTTTGCAGCTCTGCTTCTCTTAGCCATGGCTGGCCAATCAAGAGCAAACTGGTGTGTTTGCAAAGATGGAGACCCTGCAGCCCTGCAGAAGGCACTGGACTATGCCTGTGGAGCCGGGGCAGATTGCAACCCCATCAAACCCAATGGAGTTTGCTACAACCCCAACACTATCAAAGCTCACTGCAGCTACGCCGTCAACAGCTTTTTCCAGAAGAAGGGCCAATCCACCGGTACTTGTGACTTTTCTGGCGCTGCAACCCCTACTACCTCCGATCCCAGCTCAAATGGTTGTACTTTCCCTGCCAGTGCCAGCTCCTCAGGCACAACTCCGACAACACCATCCACTGGAACCACTGGAACCGGCACAACCCCAACCACCGGAACTACCCCAATCACCGGAACTACACCAACCACCGGAACAACCCCGACCACTGGCACAACCCCTACCACCGGCACAACCCCTACAACTGGTACAACACCTACGGGCACCACCCCATACACAGCAACTCCTGGAGTACTAGGAGGCATTGGCACGGGAGTAGGGCCATCGGGAGCTGGCATCAACACGGACGACAGCGGTGTGATTAGACCTATTGACACTACTAGCTTGTTTGCTTCTCTCCTAACCCTATTCTTCTCAGGCTTGATGCTTTGGTGGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0001872 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009505 GO:0009506 GO:0009628 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0030054 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0033036 GO:0033037 GO:0042545 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0050896 GO:0051179 GO:0051641 GO:0052386 GO:0052543 GO:0052545 GO:0055044 GO:0070727 GO:0071554 GO:0071555 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

226

Amino Acids

22.29

Weight (kDa)

5.53

Isoelectric Point (pI)

15.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
X8	PF07983	22 - 91	4.2e-21	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18650 AT1G18650 AT5G08000 AT5G08000 AT5G61130
fragaria_vesca	FvH4_5g13960
malus_domestica	MD06G1202000.v1.1 MD14G1210900.v1.1 MD14G1211200.v1.1
prunus_persica	Prupe.5G203900_v2.0.a1 Prupe.5G203900_v2.0.a1
pyrus_communis	pycom14g17430 pycom14g17450
rosa_chinensis	RchiOBHm_Chr7g0182991
rosa_laevigata	RLG00000005092
rosa_multiflora	Rmu_sc0000014.1_g000014
rosa_roxburghii	Rroxscaffold_3G00270910
rosa_rugosa	Rorug06G0451500
rosa_samantha	Rh7AG054800 Rh7BG054300 Rh7CG055800 Rh7DG054200
rosa_wichuraiana	Rw7G004470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	500
AccB7I	CCANNNNNTGG	1 cut(s)	359
AciI	CCGC	1 cut(s)	591
AclWI	GGATC	1 cut(s)	281
AcoI	YGGCCR	1 cut(s)	46
AfaI	GTAC	4 cut(s)	247, 307, 487, 531
AfiI	CCNNNNNNNGG	9 cut(s)	103, 229, 359, 392, 410, 428, 446, 464, 482
AgeI	ACCGGT	1 cut(s)	242
AjnI	CCWGG	1 cut(s)	523
AluBI	AGCT	8 cut(s)	23, 191, 201, 216, 294, 327, 569, 621
AluI	AGCT	8 cut(s)	23, 191, 201, 216, 294, 327, 569, 621
Alw26I	GTCTC	1 cut(s)	78
AlwI	GGATC	1 cut(s)	281
AoxI	GGCC	4 cut(s)	46, 232, 557, 672
ApeKI	GCWGC	4 cut(s)	20, 92, 198, 266
AsiGI	ACCGGT	1 cut(s)	242
AspLEI	GCGC	1 cut(s)	266
AspS9I	GGNCC	3 cut(s)	232, 557, 672
AsuC2I	CCSGG	1 cut(s)	130
AsuHPI	GGTGA	1 cut(s)	400
AxyI	CCTNAGG	1 cut(s)	331
BaeGI	GKGCMC	1 cut(s)	503
BalI	TGGCCA	1 cut(s)	48
BanI	GGYRCC	1 cut(s)	500
BbvI	GCAGC	4 cut(s)	32, 104, 210, 253
BccI	CCATC	4 cut(s)	74, 155, 361, 568
BceAI	ACGGC	1 cut(s)	191
BciT130I	CCWGG	1 cut(s)	525
BcnI	CCSGG	1 cut(s)	130
BcoDI	GTCTC	1 cut(s)	78
BfaI	CTAG	2 cut(s)	533, 618
BfmI	CTRYAG	3 cut(s)	90, 98, 196
BfoI	RGCGCY	1 cut(s)	267
BisI	GCNGC	4 cut(s)	21, 93, 199, 267
BlsI	GCNGC	4 cut(s)	22, 94, 200, 268
BmcAI	AGTACT	1 cut(s)	531
Bme1390I	CCNGG	2 cut(s)	130, 525
BmgT120I	GGNCC	3 cut(s)	232, 557, 672
BmiI	GGNNCC	4 cut(s)	127, 364, 373, 502
BmrFI	CCNGG	2 cut(s)	130, 525
BmsI	GCATC	2 cut(s)	582, 651
BpmI	CTGGAG	1 cut(s)	546
BpuMI	CCSGG	1 cut(s)	130
BsaI	GGTCTC	1 cut(s)	78
BsaJI	CCNNGG	2 cut(s)	39, 129
BsaWI	WCCGGW	4 cut(s)	242, 392, 410, 428
BsaXI	ACNNNNNCTCC	2 cut(s)	505, 535
Bsc4I	CCNNNNNNNGG	9 cut(s)	103, 229, 359, 392, 410, 428, 446, 464, 482
Bse118I	RCCGGY	3 cut(s)	242, 374, 464
Bse1I	ACTGG	7 cut(s)	68, 114, 318, 364, 373, 451, 487
Bse21I	CCTNAGG	1 cut(s)	331
BseBI	CCWGG	1 cut(s)	525
BseDI	CCNNGG	2 cut(s)	39, 129
BseGI	GGATG	1 cut(s)	353
BseLI	CCNNNNNNNGG	9 cut(s)	103, 229, 359, 392, 410, 428, 446, 464, 482
BseMII	CTCAG	2 cut(s)	345, 666
BseNI	ACTGG	7 cut(s)	68, 114, 318, 364, 373, 451, 487
BseRI	GAGGAG	1 cut(s)	319
BseSI	GKGCMC	1 cut(s)	503
BseXI	GCAGC	4 cut(s)	32, 104, 210, 253
BseYI	CCCAGC	1 cut(s)	290
BshFI	GGCC	4 cut(s)	48, 234, 559, 674
BshNI	GGYRCC	1 cut(s)	500
BshTI	ACCGGT	1 cut(s)	242
BsiSI	CCGG	7 cut(s)	129, 243, 375, 393, 411, 429, 465
BslI	CCNNNNNNNGG	9 cut(s)	103, 229, 359, 392, 410, 428, 446, 464, 482
BsmAI	GTCTC	1 cut(s)	78
BsnI	GGCC	4 cut(s)	48, 234, 559, 674
Bso31I	GGTCTC	1 cut(s)	78
Bsp1286I	GDGCHC	1 cut(s)	503
Bsp143I	GATC	1 cut(s)	286
Bsp19I	CCATGG	1 cut(s)	39
BspACI	CCGC	1 cut(s)	591
BspANI	GGCC	4 cut(s)	48, 234, 559, 674
BspCNI	CTCAG	2 cut(s)	344, 665
BspLI	GGNNCC	4 cut(s)	127, 364, 373, 502
BspMAI	CTGCAG	3 cut(s)	94, 102, 200
BspPI	GGATC	1 cut(s)	281
BspT107I	GGYRCC	1 cut(s)	500
BspTNI	GGTCTC	1 cut(s)	78
BsrFI	RCCGGY	3 cut(s)	242, 374, 464
BsrI	ACTGG	7 cut(s)	68, 114, 318, 364, 373, 451, 487
BssAI	RCCGGY	3 cut(s)	242, 374, 464
BssECI	CCNNGG	2 cut(s)	39, 129
BssMI	GATC	1 cut(s)	286
BssT1I	CCWWGG	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	525
BstC8I	GCNNGC	3 cut(s)	46, 325, 571
BstDEI	CTNAG	3 cut(s)	34, 331, 652
BstDSI	CCRYGG	1 cut(s)	39
BstENI	CCTNNNNNAGG	1 cut(s)	101
BstF5I	GGATG	1 cut(s)	353
BstH2I	RGCGCY	1 cut(s)	267
BstHHI	GCGC	1 cut(s)	266
BstKTI	GATC	1 cut(s)	289
BstMAI	GTCTC	1 cut(s)	78
BstMBI	GATC	1 cut(s)	286
BstMWI	GCNNNNNNNGC	3 cut(s)	20, 125, 333
BstNI	CCWGG	1 cut(s)	525
BstSCI	CCNGG	2 cut(s)	128, 523
BstSFI	CTRYAG	3 cut(s)	90, 98, 196
BstSLI	GKGCMC	1 cut(s)	503
BstV1I	GCAGC	4 cut(s)	32, 104, 210, 253
Bsu36I	CCTNAGG	1 cut(s)	331
BsuRI	GGCC	4 cut(s)	48, 234, 559, 674
BtgI	CCRYGG	1 cut(s)	39
BtsCI	GGATG	1 cut(s)	353
BtsI	GCAGTG	1 cut(s)	193
BtsIMutI	CAGTG	6 cut(s)	107, 193, 325, 357, 366, 444
Cac8I	GCNNGC	3 cut(s)	46, 325, 571
CfoI	GCGC	1 cut(s)	266
Cfr10I	RCCGGY	3 cut(s)	242, 374, 464
Cfr13I	GGNCC	3 cut(s)	232, 557, 672
Csp6I	GTAC	4 cut(s)	246, 306, 486, 530
CspAI	ACCGGT	1 cut(s)	242
CviAII	CATG	1 cut(s)	40
CviQI	GTAC	4 cut(s)	246, 306, 486, 530
DdeI	CTNAG	3 cut(s)	34, 331, 652
DpnI	GATC	1 cut(s)	288
DpnII	GATC	1 cut(s)	286
EaeI	YGGCCR	1 cut(s)	46
Eco130I	CCWWGG	1 cut(s)	39
Eco31I	GGTCTC	1 cut(s)	78
Eco81I	CCTNAGG	1 cut(s)	331
EcoNI	CCTNNNNNAGG	1 cut(s)	101
EcoRII	CCWGG	1 cut(s)	523
EcoT14I	CCWWGG	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	39
FaeI	CATG	1 cut(s)	43
FaiI	YATR	3 cut(s)	41, 117, 511
FatI	CATG	1 cut(s)	39
Fnu4HI	GCNGC	4 cut(s)	21, 93, 199, 267
FokI	GGATG	1 cut(s)	340
Fsp4HI	GCNGC	4 cut(s)	21, 93, 199, 267
FspBI	CTAG	2 cut(s)	533, 618
GlaI	GCGC	1 cut(s)	265
GluI	GCNGC	4 cut(s)	21, 93, 199, 267
GsaI	CCCAGC	1 cut(s)	294
GsuI	CTGGAG	1 cut(s)	546
HaeII	RGCGCY	1 cut(s)	267
HaeIII	GGCC	4 cut(s)	48, 234, 559, 674
HapII	CCGG	7 cut(s)	129, 243, 375, 393, 411, 429, 465
HhaI	GCGC	1 cut(s)	266
Hin1II	CATG	1 cut(s)	43
Hin6I	GCGC	1 cut(s)	264
HinP1I	GCGC	1 cut(s)	264
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HpaII	CCGG	7 cut(s)	129, 243, 375, 393, 411, 429, 465
HphI	GGTGA	1 cut(s)	400
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	2 cut(s)	286, 345
Hpy188III	TCNNGA	3 cut(s)	54, 223, 564
Hpy8I	GTNNAC	1 cut(s)	211
HpyAV	CCTTC	2 cut(s)	97, 223
HpyCH4V	TGCA	7 cut(s)	20, 75, 92, 100, 141, 198, 269
HpyF10VI	GCNNNNNNNGC	3 cut(s)	20, 125, 333
HpyF3I	CTNAG	3 cut(s)	34, 331, 652
Hsp92II	CATG	1 cut(s)	43
HspAI	GCGC	1 cut(s)	264
Kzo9I	GATC	1 cut(s)	286
LmnI	GCTCC	3 cut(s)	125, 332, 566
Lsp1109I	GCAGC	4 cut(s)	32, 104, 210, 253
LweI	GCATC	2 cut(s)	582, 651
MaeI	CTAG	2 cut(s)	533, 618
MaeIII	GTNAC	1 cut(s)	251
MalI	GATC	1 cut(s)	288
MboI	GATC	1 cut(s)	286
MboII	GAAGA	2 cut(s)	238, 640
MhlI	GDGCHC	1 cut(s)	503
MlsI	TGGCCA	1 cut(s)	48
MluNI	TGGCCA	1 cut(s)	48
MmeI	TCCRAC	1 cut(s)	368
MnlI	CCTC	3 cut(s)	292, 340, 530
Mox20I	TGGCCA	1 cut(s)	48
MscI	TGGCCA	1 cut(s)	48
Msp20I	TGGCCA	1 cut(s)	48
MspA1I	CMGCKG	1 cut(s)	591
MspI	CCGG	7 cut(s)	129, 243, 375, 393, 411, 429, 465
MspR9I	CCNGG	2 cut(s)	130, 525
MvaI	CCWGG	1 cut(s)	525
MwoI	GCNNNNNNNGC	3 cut(s)	20, 125, 333
NciI	CCSGG	1 cut(s)	130
NcoI	CCATGG	1 cut(s)	39
NdeII	GATC	1 cut(s)	286
NlaIII	CATG	1 cut(s)	43
NlaIV	GGNNCC	4 cut(s)	127, 364, 373, 502
NmuCI	GTSAC	1 cut(s)	251
PflMI	CCANNNNNTGG	1 cut(s)	359
PfoI	TCCNGGA	1 cut(s)	523
PinAI	ACCGGT	1 cut(s)	242
PkrI	GCNGC	4 cut(s)	22, 94, 200, 268
Psp6I	CCWGG	1 cut(s)	523
PspFI	CCCAGC	1 cut(s)	290
PspGI	CCWGG	1 cut(s)	523
PspN4I	GGNNCC	4 cut(s)	127, 364, 373, 502
PspPI	GGNCC	3 cut(s)	232, 557, 672
PstI	CTGCAG	3 cut(s)	94, 102, 200
RsaI	GTAC	4 cut(s)	247, 307, 487, 531
RsaNI	GTAC	4 cut(s)	246, 306, 486, 530
SatI	GCNGC	4 cut(s)	21, 93, 199, 267
Sau3AI	GATC	1 cut(s)	286
Sau96I	GGNCC	3 cut(s)	232, 557, 672
ScaI	AGTACT	1 cut(s)	531
ScrFI	CCNGG	2 cut(s)	130, 525
SduI	GDGCHC	1 cut(s)	503
SfaNI	GCATC	2 cut(s)	582, 651
SfcI	CTRYAG	3 cut(s)	90, 98, 196
SsiI	CCGC	1 cut(s)	591
SspMI	CTAG	2 cut(s)	533, 618
StyD4I	CCNGG	2 cut(s)	128, 523
StyI	CCWWGG	1 cut(s)	39
TatI	WGTACW	2 cut(s)	305, 529
TscAI	CASTG	6 cut(s)	114, 200, 325, 364, 373, 451
TseFI	GTSAC	1 cut(s)	251
TseI	GCWGC	4 cut(s)	20, 92, 198, 266
Tsp45I	GTSAC	1 cut(s)	251
TspGWI	ACGGA	1 cut(s)	596
TspRI	CASTG	6 cut(s)	114, 200, 325, 364, 373, 451
Van91I	CCANNNNNTGG	1 cut(s)	359
XagI	CCTNNNNNAGG	1 cut(s)	101
XspI	CTAG	2 cut(s)	533, 618
ZrmI	AGTACT	1 cut(s)	531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.