Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0010925

Physical Location & Seq

Genomic Coordinates Forward (+)

159812 .. 161412

Gene Structure 1601 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGCGGAGGAGTACAACAAGAGCCAAGAACACGAGTACGAGAGGAAGACGGGGGATTACGAGGAGGGATCTGGTGCAGGCGAGACCAAGGATCGCGGGTTGTTTGATTTCTTGGGGAAGAAAGCGGAGGCGAAGCCAACTTCTTATCAGCATGAGGAGAAGCCAGCTTCTTATCAGGAGGAGGAGGTGATCGTCACTGAGTTTGATGAGAAAGCCAAGATCTCCGATCATCATAAGGCACCGGCTCCTGATCAGTACACATCATCATACAGCAAAGTAGAAGAGGAGGAGGACAAGGAGAAGAAGCACGAGAATCTCTTGCAGAAGCTTCACCGATCTAACAGCAGTTCTAGCTCTTCAAGCGATGAGGAGGAAGATGAAGAGAAGAAGAAGAAGAGGAAAGAAAAGAAGGGATTGAAGGATAAGATCAAGGAGAAGATCTCCGGTGATGATCACACGGAAGAAGGCTATCACAAAGAGGACACGGCTGTCCCAGTGGAGAAAGTGTACGAGGAGGAACATCATCATCAAGCTCCAGCTCCGGTTGTCCATCACCACGAAGAGCCCACTGATTACCCAACTGAGGAAAATAAGGGTTTCCTCGAGAAGATCAAGGAAAAGCTTCCTGGACACAAGAAGACTGAGGAGGTTCCAGTTGCTGCTGCTTCGTACGAACAGCAGAGTCACGACCATCATGCCGCGGAGCCACCGGTAGCAGCCTCTTATGAAGCTGGCGAAGAGCCCAAGGAAAAGAAGGGTATTATGGAGAAGATCAAGGAAAAGCTTCCTGGGTACCATTCCAAGGCCGAGGAAGATCACAAGGACATCAAGGAGAAAGAGAAGGATACTCCTTCCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001786 GO:0003674 GO:0003779 GO:0005488 GO:0005507 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005911 GO:0006950 GO:0008092 GO:0008150 GO:0008289 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0010029 GO:0010033 GO:0010035 GO:0016020 GO:0016151 GO:0019898 GO:0030054 GO:0031210 GO:0031647 GO:0033993 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048580 GO:0050789 GO:0050793 GO:0050821 GO:0050896 GO:0050997 GO:0051239 GO:0055044 GO:0065007 GO:0065008 GO:0070405 GO:0072341 GO:0090559 GO:0097305 GO:1900140 GO:1901700 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dehydrin

Protein Analysis

287

Amino Acids

32.89

Weight (kDa)

5.28

Isoelectric Point (pI)

57.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dehydrin	PF00257	91 - 211	1.3e-16	Dehydrin
Dehydrin	PF00257	198 - 266	8.6e-14	Dehydrin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20440 AT1G20450 AT1G20450 AT1G76180 AT1G76180
fragaria_vesca	FvH4_2g37690
malus_domestica	MD08G1004500.v1.1 MD15G1003900.v1.1
prunus_persica	Prupe.1G356400_v2.0.a1
pyrus_communis	pycom15g00280
rosa_chinensis	RchiOBHm_Chr6g0304041
rosa_laevigata	RLG00000011023
rosa_multiflora	Rmu_sc0003805.1_g000015
rosa_roxburghii	Rroxscaffold_7G00164160
rosa_rugosa	Rorug06G0327200
rosa_samantha	Rh6AG441000 Rh6BG461800 Rh6CG453200 Rh6DG440500
rosa_wichuraiana	Rw6G038210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	488
Acc65I	GGTACC	1 cut(s)	792
AccB1I	GGYRCC	2 cut(s)	238, 792
AccII	CGCG	2 cut(s)	96, 701
AciI	CCGC	5 cut(s)	5, 96, 125, 699, 701
AclWI	GGATC	2 cut(s)	76, 99
AfaI	GTAC	6 cut(s)	14, 38, 257, 509, 671, 794
AfiI	CCNNNNNNNGG	2 cut(s)	583, 802
AgeI	ACCGGT	1 cut(s)	709
AgsI	TTSAA	2 cut(s)	360, 418
AjnI	CCWGG	2 cut(s)	625, 787
AluBI	AGCT	8 cut(s)	167, 328, 354, 533, 539, 622, 731, 784
AluI	AGCT	8 cut(s)	167, 328, 354, 533, 539, 622, 731, 784
Alw26I	GTCTC	1 cut(s)	77
AlwI	GGATC	2 cut(s)	76, 99
AlwNI	CAGNNNCTG	1 cut(s)	659
Ama87I	CYCGRG	1 cut(s)	602
AoxI	GGCC	1 cut(s)	804
ApeKI	GCWGC	3 cut(s)	659, 662, 716
AsiGI	ACCGGT	1 cut(s)	709
Asp700I	GAANNNNTTC	2 cut(s)	621, 783
Asp718I	GGTACC	1 cut(s)	792
AsuHPI	GGTGA	4 cut(s)	199, 323, 458, 545
AvaI	CYCGRG	1 cut(s)	602
BanI	GGYRCC	2 cut(s)	238, 792
BanII	GRGCYC	2 cut(s)	567, 744
BauI	CACGAG	2 cut(s)	32, 308
BbsI	GAAGAC	2 cut(s)	53, 644
BbvI	GCAGC	3 cut(s)	646, 649, 728
BccI	CCATC	2 cut(s)	558, 699
BceAI	ACGGC	1 cut(s)	501
BcgI	CGANNNNNNTGC	2 cut(s)	677, 711
BciT130I	CCWGG	2 cut(s)	627, 789
BciVI	GTATCC	1 cut(s)	838
BclI	TGATCA	2 cut(s)	250, 451
BcoDI	GTCTC	1 cut(s)	77
BfaI	CTAG	1 cut(s)	351
BfuI	GTATCC	1 cut(s)	838
BglII	AGATCT	2 cut(s)	219, 438
BisI	GCNGC	4 cut(s)	660, 663, 699, 717
BlsI	GCNGC	4 cut(s)	661, 664, 700, 718
Bme1390I	CCNGG	2 cut(s)	627, 789
BmeT110I	CYCGRG	1 cut(s)	602
BmiI	GGNNCC	5 cut(s)	240, 246, 651, 705, 794
BmrFI	CCNGG	2 cut(s)	627, 789
BmrI	ACTGGG	1 cut(s)	488
BmuI	ACTGGG	1 cut(s)	488
BpiI	GAAGAC	2 cut(s)	53, 644
BplI	GAGNNNNNCTC	2 cut(s)	425, 457
BpmI	CTGGAG	1 cut(s)	519
BsaI	GGTCTC	1 cut(s)	77
BsaJI	CCNNGG	6 cut(s)	87, 699, 744, 788, 801, 807
BsaWI	WCCGGW	3 cut(s)	443, 541, 709
BsaXI	ACNNNNNCTCC	2 cut(s)	491, 521
Bsc4I	CCNNNNNNNGG	2 cut(s)	583, 802
Bse118I	RCCGGY	2 cut(s)	241, 709
Bse1I	ACTGG	2 cut(s)	494, 653
BseBI	CCWGG	2 cut(s)	627, 789
BseDI	CCNNGG	6 cut(s)	87, 699, 744, 788, 801, 807
BseLI	CCNNNNNNNGG	2 cut(s)	583, 802
BseMII	CTCAG	3 cut(s)	189, 573, 633
BseNI	ACTGG	2 cut(s)	494, 653
BseXI	GCAGC	3 cut(s)	646, 649, 728
BsgI	GTGCAG	1 cut(s)	96
Bsh1236I	CGCG	2 cut(s)	96, 701
BshFI	GGCC	1 cut(s)	806
BshNI	GGYRCC	2 cut(s)	238, 792
BshTI	ACCGGT	1 cut(s)	709
BsiHKCI	CYCGRG	1 cut(s)	602
BsiSI	CCGG	4 cut(s)	242, 444, 542, 710
BsiWI	CGTACG	1 cut(s)	669
BslFI	GGGAC	1 cut(s)	476
BslI	CCNNNNNNNGG	2 cut(s)	583, 802
BsmAI	GTCTC	1 cut(s)	77
BsmFI	GGGAC	1 cut(s)	476
BsnI	GGCC	1 cut(s)	806
Bso31I	GGTCTC	1 cut(s)	77
BsoBI	CYCGRG	1 cut(s)	602
Bsp1286I	GDGCHC	2 cut(s)	567, 744
BspACI	CCGC	5 cut(s)	5, 96, 125, 699, 701
BspANI	GGCC	1 cut(s)	806
BspCNI	CTCAG	3 cut(s)	190, 574, 634
BspFNI	CGCG	2 cut(s)	96, 701
BspLI	GGNNCC	5 cut(s)	240, 246, 651, 705, 794
BspPI	GGATC	2 cut(s)	76, 99
BspQI	GCTCTTC	3 cut(s)	361, 555, 732
BspT107I	GGYRCC	2 cut(s)	238, 792
BspTNI	GGTCTC	1 cut(s)	77
BsrFI	RCCGGY	2 cut(s)	241, 709
BsrI	ACTGG	2 cut(s)	494, 653
BssAI	RCCGGY	2 cut(s)	241, 709
BssECI	CCNNGG	6 cut(s)	87, 699, 744, 788, 801, 807
BssSI	CACGAG	2 cut(s)	32, 308
BssT1I	CCWWGG	3 cut(s)	87, 744, 801
Bst2BI	CACGAG	2 cut(s)	32, 308
Bst2UI	CCWGG	2 cut(s)	627, 789
Bst6I	CTCTTC	6 cut(s)	276, 361, 375, 389, 555, 732
BstC8I	GCNNGC	3 cut(s)	79, 165, 733
BstDEI	CTNAG	3 cut(s)	198, 582, 642
BstDSI	CCRYGG	1 cut(s)	699
BstFNI	CGCG	2 cut(s)	96, 701
BstMAI	GTCTC	1 cut(s)	77
BstMWI	GCNNNNNNNGC	2 cut(s)	351, 360
BstNI	CCWGG	2 cut(s)	627, 789
BstSCI	CCNGG	2 cut(s)	625, 787
BstUI	CGCG	2 cut(s)	96, 701
BstV1I	GCAGC	3 cut(s)	646, 649, 728
BstV2I	GAAGAC	2 cut(s)	53, 644
BstX2I	RGATCY	3 cut(s)	68, 219, 438
BstYI	RGATCY	3 cut(s)	68, 219, 438
BsuI	GTATCC	1 cut(s)	838
BsuRI	GGCC	1 cut(s)	806
BtgI	CCRYGG	1 cut(s)	699
BtgZI	GCGATG	1 cut(s)	378
BtsIMutI	CAGTG	3 cut(s)	195, 501, 567
Cac8I	GCNNGC	3 cut(s)	79, 165, 733
CaiI	CAGNNNCTG	1 cut(s)	659
Cfr10I	RCCGGY	2 cut(s)	241, 709
Cfr42I	CCGCGG	1 cut(s)	702
Csp6I	GTAC	6 cut(s)	13, 37, 256, 508, 670, 793
CspAI	ACCGGT	1 cut(s)	709
CviAII	CATG	2 cut(s)	152, 695
CviQI	GTAC	6 cut(s)	13, 37, 256, 508, 670, 793
DdeI	CTNAG	3 cut(s)	198, 582, 642
DrdI	GACNNNNNNGTC	1 cut(s)	488
DseDI	GACNNNNNNGTC	1 cut(s)	488
Eam1104I	CTCTTC	6 cut(s)	276, 361, 375, 389, 555, 732
EarI	CTCTTC	6 cut(s)	276, 361, 375, 389, 555, 732
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	3 cut(s)	87, 744, 801
Eco24I	GRGCYC	2 cut(s)	567, 744
Eco31I	GGTCTC	1 cut(s)	77
Eco88I	CYCGRG	1 cut(s)	602
EcoRII	CCWGG	2 cut(s)	625, 787
EcoT14I	CCWWGG	3 cut(s)	87, 744, 801
EcoT38I	GRGCYC	2 cut(s)	567, 744
ErhI	CCWWGG	3 cut(s)	87, 744, 801
FaeI	CATG	2 cut(s)	155, 698
FaiI	YATR	6 cut(s)	153, 234, 268, 696, 726, 764
FaqI	GGGAC	1 cut(s)	476
FatI	CATG	2 cut(s)	151, 694
FauI	CCCGC	1 cut(s)	89
FbaI	TGATCA	2 cut(s)	250, 451
Fnu4HI	GCNGC	4 cut(s)	660, 663, 699, 717
FriOI	GRGCYC	2 cut(s)	567, 744
Fsp4HI	GCNGC	4 cut(s)	660, 663, 699, 717
FspBI	CTAG	1 cut(s)	351
GluI	GCNGC	4 cut(s)	660, 663, 699, 717
GsuI	CTGGAG	1 cut(s)	519
HaeIII	GGCC	1 cut(s)	806
HapII	CCGG	4 cut(s)	242, 444, 542, 710
Hin1II	CATG	2 cut(s)	155, 698
HindIII	AAGCTT	3 cut(s)	326, 620, 782
HinfI	GANTC	2 cut(s)	313, 682
HpaII	CCGG	4 cut(s)	242, 444, 542, 710
HphI	GGTGA	4 cut(s)	199, 323, 458, 545
Hpy166II	GTNNAC	2 cut(s)	258, 508
Hpy188I	TCNGA	1 cut(s)	226
Hpy188III	TCNNGA	4 cut(s)	176, 248, 604, 686
Hpy8I	GTNNAC	2 cut(s)	258, 508
HpyAV	CCTTC	6 cut(s)	403, 412, 458, 748, 835, 861
HpyCH4V	TGCA	2 cut(s)	77, 322
HpyF10VI	GCNNNNNNNGC	2 cut(s)	351, 360
HpyF3I	CTNAG	3 cut(s)	198, 582, 642
Hsp92II	CATG	2 cut(s)	155, 698
KpnI	GGTACC	1 cut(s)	796
Ksp22I	TGATCA	2 cut(s)	250, 451
KspI	CCGCGG	1 cut(s)	702
LguI	GCTCTTC	3 cut(s)	361, 555, 732
LmnI	GCTCC	4 cut(s)	250, 538, 544, 703
Lsp1109I	GCAGC	3 cut(s)	646, 649, 728
MaeI	CTAG	1 cut(s)	351
MaeIII	GTNAC	2 cut(s)	193, 683
MflI	RGATCY	3 cut(s)	68, 219, 438
MhlI	GDGCHC	2 cut(s)	567, 744
MlyI	GAGTC	1 cut(s)	691
MroXI	GAANNNNTTC	2 cut(s)	621, 783
MspA1I	CMGCKG	1 cut(s)	701
MspI	CCGG	4 cut(s)	242, 444, 542, 710
MspR9I	CCNGG	2 cut(s)	627, 789
MvaI	CCWGG	2 cut(s)	627, 789
MvnI	CGCG	2 cut(s)	96, 701
MwoI	GCNNNNNNNGC	2 cut(s)	351, 360
NlaIII	CATG	2 cut(s)	155, 698
NlaIV	GGNNCC	5 cut(s)	240, 246, 651, 705, 794
NmeAIII	GCCGAG	1 cut(s)	832
NmuCI	GTSAC	2 cut(s)	193, 683
PaeR7I	CTCGAG	1 cut(s)	602
PciSI	GCTCTTC	3 cut(s)	361, 555, 732
PdmI	GAANNNNTTC	2 cut(s)	621, 783
PfeI	GAWTC	1 cut(s)	313
Pfl23II	CGTACG	1 cut(s)	669
PfoI	TCCNGGA	1 cut(s)	625
PinAI	ACCGGT	1 cut(s)	709
PkrI	GCNGC	4 cut(s)	661, 664, 700, 718
PleI	GAGTC	1 cut(s)	690
PpsI	GAGTC	1 cut(s)	690
Psp6I	CCWGG	2 cut(s)	625, 787
PspGI	CCWGG	2 cut(s)	625, 787
PspLI	CGTACG	1 cut(s)	669
PspN4I	GGNNCC	5 cut(s)	240, 246, 651, 705, 794
PstNI	CAGNNNCTG	1 cut(s)	659
PsuI	RGATCY	3 cut(s)	68, 219, 438
RsaI	GTAC	6 cut(s)	14, 38, 257, 509, 671, 794
RsaNI	GTAC	6 cut(s)	13, 37, 256, 508, 670, 793
SacII	CCGCGG	1 cut(s)	702
SapI	GCTCTTC	3 cut(s)	361, 555, 732
SatI	GCNGC	4 cut(s)	660, 663, 699, 717
SchI	GAGTC	1 cut(s)	691
ScrFI	CCNGG	2 cut(s)	627, 789
SduI	GDGCHC	2 cut(s)	567, 744
Sfr274I	CTCGAG	1 cut(s)	602
Sfr303I	CCGCGG	1 cut(s)	702
SgrBI	CCGCGG	1 cut(s)	702
SlaI	CTCGAG	1 cut(s)	602
SmlI	CTYRAG	1 cut(s)	602
SmoI	CTYRAG	1 cut(s)	602
SsiI	CCGC	5 cut(s)	5, 96, 125, 699, 701
SspMI	CTAG	1 cut(s)	351
StyD4I	CCNGG	2 cut(s)	625, 787
StyI	CCWWGG	3 cut(s)	87, 744, 801
TaqI	TCGA	1 cut(s)	603
TatI	WGTACW	2 cut(s)	12, 255
TauI	GCSGC	1 cut(s)	701
TfiI	GAWTC	1 cut(s)	313
TscAI	CASTG	3 cut(s)	202, 501, 574
TseFI	GTSAC	2 cut(s)	193, 683
TseI	GCWGC	3 cut(s)	659, 662, 716
Tsp45I	GTSAC	2 cut(s)	193, 683
TspDTI	ATGAA	2 cut(s)	393, 741
TspGWI	ACGGA	1 cut(s)	473
TspRI	CASTG	3 cut(s)	202, 501, 574
XhoI	CTCGAG	1 cut(s)	602
XmnI	GAANNNNTTC	2 cut(s)	621, 783
XspI	CTAG	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.