Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0004066

Physical Location & Seq

Genomic Coordinates Forward (+)

245761 .. 246585

Gene Structure 825 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGAGTGTCCTCCACCAACGTTAACAAGCCCCACTCACATCACTGACAATCCAGATACGAAACCCACTAGGTCACCGCCGTCGCCGCAGTCACAAGAGCCAGACCCCAAGAAGCTCAAAATGTCCACCACCACCACCAGCGACGACGAAGAAGCTACCGCCGCCACCACCAACGCCGCTAAAACGCCACGGTACAAGCGCCGAAAGGTTTCAATTTTCTTTGCTTATTTAGGCGTCGGATACCAAGGAATGCAAAAGAATCCAGGCGCCAAAACCATCGAGGGGGACCTCGAAGAAGCTCTCTACCTTTCCAACGCCGTCCCCGAGCAGGACCGCAATAGCCCTAAGCGCTACGATTGGGCCCGCTCCGCCCGCACCGATAAGGGGGTCAGCGCCGTCGGCCAGGTTGTCTCGGGCCGCTTCTATGTCGATCCGCCGGGATTCATCGACCGCCTAAATTCGAACCTTTCTCCTCAGATTCGGATTTTCGGCTACAAACGCGTCACGGCGTCGTTTAACGCGAAGAAGTTCTGTGATCGGAGAAGGTATGTGTATCTGATTCCCGTATTTGCCCTTGATCCTTCTGCTCATCGCGATAGAGGGAGCGTGTTGGCTAGTCTTGGGTCTGATCAGGAGTTTGTTAAGTGCTTGGAGTGCTCCGAGAGAGGGCGTAAAGTCGGGGGCTTGATGGGTAAGCGCACGTATGAATTGAGAGGTACGAATTTTGAGGTAAGCATTTCTCGAACACCAATGAGTCTATGGTTGAATCTGAAATTGGTGAAAAATTTAGGGTTCTTCCCGGAAATGCTGGCGGTGATAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000049 GO:0000959 GO:0000963 GO:0001522 GO:0002153 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009982 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016853 GO:0016866 GO:0031119 GO:0031974 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070525 GO:0070900 GO:0070902 GO:0071704 GO:0090304 GO:0090646 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363 GO:1990481

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_1

Protein Analysis

275

Amino Acids

30.61

Weight (kDa)

9.56

Isoelectric Point (pI)

53.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004066)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20370 AT1G76120 AT1G76120
fragaria_vesca	FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_4g09040 FvH4_5g07491
malus_domestica	MD15G1005300.v1.1 MD15G1005400.v1.1
prunus_persica	Prupe.1G357900_v2.0.a1
pyrus_communis	pycom08g00460 pycom15g00380 pycom15g00390
rosa_chinensis	RchiOBHm_Chr6g0303831
rosa_laevigata	RLG00000011040
rosa_multiflora	Rmu_co8307379.1_g000001 Rmu_sc0012878.1_g000001 Rmu_sc0022895.1_g000001
rosa_roxburghii	Rroxscaffold_7G00164370
rosa_rugosa	Rorug06G0325200
rosa_samantha	Rh6AG439500 Rh6BG463500 Rh6CG451800 Rh6DG438700
rosa_wichuraiana	Rw6G038050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	266
AccBSI	CCGCTC	1 cut(s)	366
AccII	CGCG	3 cut(s)	501, 521, 594
AclI	AACGTT	1 cut(s)	20
AclWI	GGATC	2 cut(s)	425, 572
AcoI	YGGCCR	1 cut(s)	400
AcsI	RAATTY	3 cut(s)	457, 721, 784
AcyI	GRCGYC	3 cut(s)	234, 267, 509
AfaI	GTAC	2 cut(s)	194, 718
AfeI	AGCGCT	1 cut(s)	350
AfiI	CCNNNNNNNGG	4 cut(s)	282, 328, 384, 666
AflIII	ACRYGT	1 cut(s)	499
AgsI	TTSAA	2 cut(s)	213, 766
AjnI	CCWGG	2 cut(s)	262, 402
AjuI	GAANNNNNNNTTGG	2 cut(s)	758, 790
AluBI	AGCT	3 cut(s)	115, 155, 299
AluI	AGCT	3 cut(s)	115, 155, 299
Alw21I	GWGCWC	1 cut(s)	659
Alw26I	GTCTC	1 cut(s)	415
AlwI	GGATC	2 cut(s)	425, 572
Ama87I	CYCGRG	2 cut(s)	323, 412
Aor51HI	AGCGCT	1 cut(s)	350
AoxI	GGCC	3 cut(s)	360, 400, 415
ApaI	GGGCCC	1 cut(s)	364
ApoI	RAATTY	3 cut(s)	457, 721, 784
Asp700I	GAANNNNTTC	2 cut(s)	208, 527
AspLEI	GCGC	5 cut(s)	201, 269, 351, 395, 699
AspS9I	GGNCC	5 cut(s)	286, 331, 360, 361, 415
AsuC2I	CCSGG	2 cut(s)	438, 800
AsuHPI	GGTGA	2 cut(s)	66, 790
AsuII	TTCGAA	1 cut(s)	461
AvaI	CYCGRG	2 cut(s)	323, 412
AvaII	GGWCC	2 cut(s)	286, 331
BaeGI	GKGCMC	1 cut(s)	364
BanI	GGYRCC	1 cut(s)	266
BanII	GRGCYC	1 cut(s)	364
Bbv12I	GWGCWC	1 cut(s)	659
BccI	CCATC	2 cut(s)	284, 682
BceAI	ACGGC	4 cut(s)	64, 302, 380, 522
BciT130I	CCWGG	2 cut(s)	264, 404
BciVI	GTATCC	1 cut(s)	233
BclI	TGATCA	1 cut(s)	628
BcnI	CCSGG	2 cut(s)	438, 800
BcoDI	GTCTC	1 cut(s)	415
BfaI	CTAG	2 cut(s)	69, 615
BfoI	RGCGCY	4 cut(s)	202, 270, 352, 396
BfuI	GTATCC	1 cut(s)	233
BisI	GCNGC	4 cut(s)	86, 162, 177, 418
BlsI	GCNGC	4 cut(s)	87, 163, 178, 419
Bme1390I	CCNGG	4 cut(s)	264, 404, 438, 800
Bme18I	GGWCC	2 cut(s)	286, 331
BmeT110I	CYCGRG	2 cut(s)	323, 412
BmgT120I	GGNCC	5 cut(s)	286, 331, 360, 361, 415
BmiI	GGNNCC	3 cut(s)	268, 287, 362
BmrFI	CCNGG	4 cut(s)	264, 404, 438, 800
Bpu10I	CCTNAGC	1 cut(s)	345
Bpu14I	TTCGAA	1 cut(s)	461
BpuMI	CCSGG	2 cut(s)	438, 800
BsaAI	YACGTR	1 cut(s)	702
BsaHI	GRCGYC	3 cut(s)	234, 267, 509
BsaJI	CCNNGG	2 cut(s)	188, 244
Bsc4I	CCNNNNNNNGG	4 cut(s)	282, 328, 384, 666
BseBI	CCWGG	2 cut(s)	264, 404
BseDI	CCNNGG	2 cut(s)	188, 244
BseLI	CCNNNNNNNGG	4 cut(s)	282, 328, 384, 666
BseMII	CTCAG	1 cut(s)	488
BseRI	GAGGAG	1 cut(s)	462
BseSI	GKGCMC	1 cut(s)	364
Bsh1236I	CGCG	3 cut(s)	501, 521, 594
Bsh1285I	CGRYCG	1 cut(s)	451
BshFI	GGCC	3 cut(s)	362, 402, 417
BshNI	GGYRCC	1 cut(s)	266
BsiEI	CGRYCG	1 cut(s)	451
BsiHKAI	GWGCWC	1 cut(s)	659
BsiHKCI	CYCGRG	2 cut(s)	323, 412
BsiSI	CCGG	2 cut(s)	437, 800
BslFI	GGGAC	2 cut(s)	299, 305
BslI	CCNNNNNNNGG	4 cut(s)	282, 328, 384, 666
BsmAI	GTCTC	1 cut(s)	415
BsmFI	GGGAC	2 cut(s)	299, 305
BsmI	GAATGC	1 cut(s)	255
BsnI	GGCC	3 cut(s)	362, 402, 417
BsoBI	CYCGRG	2 cut(s)	323, 412
Bsp119I	TTCGAA	1 cut(s)	461
Bsp120I	GGGCCC	1 cut(s)	360
Bsp1286I	GDGCHC	2 cut(s)	364, 659
Bsp143I	GATC	4 cut(s)	430, 535, 577, 628
Bsp68I	TCGCGA	1 cut(s)	594
BspANI	GGCC	3 cut(s)	362, 402, 417
BspCNI	CTCAG	1 cut(s)	487
BspFNI	CGCG	3 cut(s)	501, 521, 594
BspLI	GGNNCC	3 cut(s)	268, 287, 362
BspPI	GGATC	2 cut(s)	425, 572
BspT104I	TTCGAA	1 cut(s)	461
BspT107I	GGYRCC	1 cut(s)	266
BsrBI	CCGCTC	1 cut(s)	366
BssECI	CCNNGG	2 cut(s)	188, 244
BssMI	GATC	4 cut(s)	430, 535, 577, 628
BssNI	GRCGYC	3 cut(s)	234, 267, 509
BssT1I	CCWWGG	1 cut(s)	244
Bst2UI	CCWGG	2 cut(s)	264, 404
Bst4CI	ACNGT	1 cut(s)	192
BstACI	GRCGYC	3 cut(s)	234, 267, 509
BstBAI	YACGTR	1 cut(s)	702
BstBI	TTCGAA	1 cut(s)	461
BstC8I	GCNNGC	3 cut(s)	364, 373, 810
BstDEI	CTNAG	2 cut(s)	345, 474
BstDSI	CCRYGG	1 cut(s)	188
BstEII	GGTNACC	1 cut(s)	72
BstFNI	CGCG	3 cut(s)	501, 521, 594
BstH2I	RGCGCY	4 cut(s)	202, 270, 352, 396
BstHHI	GCGC	5 cut(s)	201, 269, 351, 395, 699
BstKTI	GATC	4 cut(s)	433, 538, 580, 631
BstMAI	GTCTC	1 cut(s)	415
BstMBI	GATC	4 cut(s)	430, 535, 577, 628
BstMCI	CGRYCG	1 cut(s)	451
BstMWI	GCNNNNNNNGC	8 cut(s)	85, 161, 348, 368, 372, 399, 498, 654
BstNI	CCWGG	2 cut(s)	264, 404
BstPI	GGTNACC	1 cut(s)	72
BstSCI	CCNGG	4 cut(s)	262, 402, 436, 798
BstSLI	GKGCMC	1 cut(s)	364
BstUI	CGCG	3 cut(s)	501, 521, 594
BsuI	GTATCC	1 cut(s)	233
BsuRI	GGCC	3 cut(s)	362, 402, 417
BtgI	CCRYGG	1 cut(s)	188
BtgZI	GCGATG	1 cut(s)	575
BtsIMutI	CAGTG	1 cut(s)	42
BtuMI	TCGCGA	1 cut(s)	594
Cac8I	GCNNGC	3 cut(s)	364, 373, 810
CfoI	GCGC	5 cut(s)	201, 269, 351, 395, 699
Cfr13I	GGNCC	5 cut(s)	286, 331, 360, 361, 415
CseI	GACGC	3 cut(s)	223, 490, 498
Csp6I	GTAC	2 cut(s)	193, 717
CviQI	GTAC	2 cut(s)	193, 717
DdeI	CTNAG	2 cut(s)	345, 474
DinI	GGCGCC	1 cut(s)	268
DpnI	GATC	4 cut(s)	432, 537, 579, 630
DpnII	GATC	4 cut(s)	430, 535, 577, 628
EaeI	YGGCCR	1 cut(s)	400
EciI	GGCGGA	2 cut(s)	358, 423
Eco130I	CCWWGG	1 cut(s)	244
Eco24I	GRGCYC	1 cut(s)	364
Eco47I	GGWCC	2 cut(s)	286, 331
Eco47III	AGCGCT	1 cut(s)	350
Eco88I	CYCGRG	2 cut(s)	323, 412
Eco91I	GGTNACC	1 cut(s)	72
EcoO109I	RGGNCCY	1 cut(s)	286
EcoO65I	GGTNACC	1 cut(s)	72
EcoRII	CCWGG	2 cut(s)	262, 402
EcoT14I	CCWWGG	1 cut(s)	244
EcoT38I	GRGCYC	1 cut(s)	364
EgeI	GGCGCC	1 cut(s)	268
EheI	GGCGCC	1 cut(s)	268
ErhI	CCWWGG	1 cut(s)	244
FaiI	YATR	4 cut(s)	426, 549, 705, 760
FaqI	GGGAC	2 cut(s)	299, 305
FauI	CCCGC	2 cut(s)	371, 380
FbaI	TGATCA	1 cut(s)	628
Fnu4HI	GCNGC	4 cut(s)	86, 162, 177, 418
FriOI	GRGCYC	1 cut(s)	364
Fsp4HI	GCNGC	4 cut(s)	86, 162, 177, 418
FspBI	CTAG	2 cut(s)	69, 615
GlaI	GCGC	5 cut(s)	200, 268, 350, 394, 698
GluI	GCNGC	4 cut(s)	86, 162, 177, 418
HaeII	RGCGCY	4 cut(s)	202, 270, 352, 396
HaeIII	GGCC	3 cut(s)	362, 402, 417
HapII	CCGG	2 cut(s)	437, 800
HgaI	GACGC	3 cut(s)	223, 490, 498
HhaI	GCGC	5 cut(s)	201, 269, 351, 395, 699
Hin1I	GRCGYC	3 cut(s)	234, 267, 509
Hin6I	GCGC	5 cut(s)	199, 267, 349, 393, 697
HinP1I	GCGC	5 cut(s)	199, 267, 349, 393, 697
HincII	GTYRAC	1 cut(s)	24
HindII	GTYRAC	1 cut(s)	24
HinfI	GANTC	6 cut(s)	259, 441, 478, 559, 754, 766
HpaI	GTTAAC	1 cut(s)	24
HpaII	CCGG	2 cut(s)	437, 800
HphI	GGTGA	2 cut(s)	66, 790
Hpy166II	GTNNAC	2 cut(s)	24, 126
Hpy188I	TCNGA	8 cut(s)	239, 477, 483, 540, 558, 628, 661, 771
Hpy188III	TCNNGA	4 cut(s)	53, 593, 632, 741
Hpy8I	GTNNAC	2 cut(s)	24, 126
Hpy99I	CGWCG	6 cut(s)	85, 146, 149, 239, 401, 514
HpyAV	CCTTC	2 cut(s)	537, 591
HpyCH4III	ACNGT	1 cut(s)	192
HpyCH4IV	ACGT	2 cut(s)	20, 701
HpyCH4V	TGCA	1 cut(s)	253
HpyF10VI	GCNNNNNNNGC	8 cut(s)	85, 161, 348, 368, 372, 399, 498, 654
HpyF3I	CTNAG	2 cut(s)	345, 474
HpySE526I	ACGT	2 cut(s)	20, 701
Hsp92I	GRCGYC	3 cut(s)	234, 267, 509
HspAI	GCGC	5 cut(s)	199, 267, 349, 393, 697
KasI	GGCGCC	1 cut(s)	266
Ksp22I	TGATCA	1 cut(s)	628
KspAI	GTTAAC	1 cut(s)	24
Kzo9I	GATC	4 cut(s)	430, 535, 577, 628
LmnI	GCTCC	3 cut(s)	371, 603, 662
MaeI	CTAG	2 cut(s)	69, 615
MaeII	ACGT	2 cut(s)	20, 701
MaeIII	GTNAC	3 cut(s)	72, 90, 502
MalI	GATC	4 cut(s)	432, 537, 579, 630
MbiI	CCGCTC	1 cut(s)	366
MboI	GATC	4 cut(s)	430, 535, 577, 628
MboII	GAAGA	4 cut(s)	161, 305, 535, 787
MhlI	GDGCHC	2 cut(s)	364, 659
MluCI	AATT	7 cut(s)	213, 457, 707, 721, 773, 784, 819
MluI	ACGCGT	1 cut(s)	499
Mly113I	GGCGCC	1 cut(s)	267
MlyI	GAGTC	1 cut(s)	763
MmeI	TCCRAC	2 cut(s)	217, 336
MnlI	CCTC	8 cut(s)	21, 274, 299, 483, 593, 659, 707, 721
MroXI	GAANNNNTTC	2 cut(s)	208, 527
MseI	TTAA	3 cut(s)	23, 516, 642
MspI	CCGG	2 cut(s)	437, 800
MspR9I	CCNGG	4 cut(s)	264, 404, 438, 800
Mva1269I	GAATGC	1 cut(s)	255
MvaI	CCWGG	2 cut(s)	264, 404
MvnI	CGCG	3 cut(s)	501, 521, 594
MwoI	GCNNNNNNNGC	8 cut(s)	85, 161, 348, 368, 372, 399, 498, 654
NarI	GGCGCC	1 cut(s)	267
NciI	CCSGG	2 cut(s)	438, 800
NdeII	GATC	4 cut(s)	430, 535, 577, 628
NlaIV	GGNNCC	3 cut(s)	268, 287, 362
NmuCI	GTSAC	3 cut(s)	72, 90, 502
NruI	TCGCGA	1 cut(s)	594
NspV	TTCGAA	1 cut(s)	461
PcsI	WCGNNNNNNNCGW	2 cut(s)	321, 518
PctI	GAATGC	1 cut(s)	255
PdmI	GAANNNNTTC	2 cut(s)	208, 527
PfeI	GAWTC	5 cut(s)	259, 441, 478, 559, 766
PfoI	TCCNGGA	1 cut(s)	798
PkrI	GCNGC	4 cut(s)	87, 163, 178, 419
PleI	GAGTC	1 cut(s)	762
PluTI	GGCGCC	1 cut(s)	270
PpsI	GAGTC	1 cut(s)	762
Ppu21I	YACGTR	1 cut(s)	702
PpuMI	RGGWCCY	1 cut(s)	286
Psp1406I	AACGTT	1 cut(s)	20
Psp5II	RGGWCCY	1 cut(s)	286
Psp6I	CCWGG	2 cut(s)	262, 402
PspEI	GGTNACC	1 cut(s)	72
PspGI	CCWGG	2 cut(s)	262, 402
PspN4I	GGNNCC	3 cut(s)	268, 287, 362
PspOMI	GGGCCC	1 cut(s)	360
PspPI	GGNCC	5 cut(s)	286, 331, 360, 361, 415
PspPPI	RGGWCCY	1 cut(s)	286
RruI	TCGCGA	1 cut(s)	594
RsaI	GTAC	2 cut(s)	194, 718
RsaNI	GTAC	2 cut(s)	193, 717
SaqAI	TTAA	3 cut(s)	23, 516, 642
SatI	GCNGC	4 cut(s)	86, 162, 177, 418
Sau3AI	GATC	4 cut(s)	430, 535, 577, 628
Sau96I	GGNCC	5 cut(s)	286, 331, 360, 361, 415
SchI	GAGTC	1 cut(s)	763
ScrFI	CCNGG	4 cut(s)	264, 404, 438, 800
SduI	GDGCHC	2 cut(s)	364, 659
SfoI	GGCGCC	1 cut(s)	268
SfuI	TTCGAA	1 cut(s)	461
SinI	GGWCC	2 cut(s)	286, 331
Sse9I	AATT	7 cut(s)	213, 457, 707, 721, 773, 784, 819
SspDI	GGCGCC	1 cut(s)	266
SspMI	CTAG	2 cut(s)	69, 615
StyD4I	CCNGG	4 cut(s)	262, 402, 436, 798
StyI	CCWWGG	1 cut(s)	244
TaaI	ACNGT	1 cut(s)	192
TaiI	ACGT	2 cut(s)	23, 704
TaqI	TCGA	6 cut(s)	279, 291, 429, 447, 461, 742
TasI	AATT	7 cut(s)	213, 457, 707, 721, 773, 784, 819
TauI	GCSGC	4 cut(s)	88, 164, 179, 420
TfiI	GAWTC	5 cut(s)	259, 441, 478, 559, 766
Tru1I	TTAA	3 cut(s)	23, 516, 642
Tru9I	TTAA	3 cut(s)	23, 516, 642
TscAI	CASTG	1 cut(s)	49
TseFI	GTSAC	3 cut(s)	72, 90, 502
Tsp45I	GTSAC	3 cut(s)	72, 90, 502
TspDTI	ATGAA	2 cut(s)	433, 720
TspRI	CASTG	1 cut(s)	49
VpaK11BI	GGWCC	2 cut(s)	286, 331
XapI	RAATTY	3 cut(s)	457, 721, 784
XcmI	CCANNNNNNNNNTGG	1 cut(s)	756
XmnI	GAANNNNTTC	2 cut(s)	208, 527
XspI	CTAG	2 cut(s)	69, 615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.