Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0009793

Physical Location & Seq

Genomic Coordinates Reverse (-)

296567 .. 302374

Gene Structure 5808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGTCTGCCCTTTGTCCTGGAAGAGATGAGTGCTCCATTGCTATCTACCTCACCGGATTTCAACAAGCGATCGTAGGGCTGGGAACACTGGTGATGATGCCATTGGTAGGTAACCTCTCAGACAAGTGTGGGAGAAAAGCTTTGCTTACACTGCCAATGATCCTCACAATTATCCCTTTGGGGATATTGGGGTACAGCAGGAGTAAGAGTTTCTTCTACGTCTACTTCGTGGTCAAAACTCTAACCGACATGGTTTGTGAAGGCAGCGTTCAGTGCCTCGCCCTTGCCTATGTGGCAGATAATGTGGCAGAAGGGCGGCGAGCCTCGACGTTCGGAGTCCTATCGGGGATTAGTTCCTCTGCATTTGTCTGCGGAACCTTATTCACTCGTTTCGTCTCCACTTCCTCCACTTTTCAGGTTGCGACTGTGGTGGCGGTTGTGGCAGTTACGTACATGAGGGTTTTCCTACCGGATTCCAACATAGACAAGAACCTTTCCGCTCCGTTACTGTCGGATGAAAAGATCAAAATTAAGGATTCAGCTGAAAATTCAAGTGCTCAGATATTGCAGCCAGCCAAAACATTGCCTTCCTTAAGTGATTTTATCTCCTTGTTGAAAACCAGCACGACGTTTTCGCAAGCTGCAATTGTTGCGTTTTTCAGTAATCTAGCGGATGTTGGCCTTCATGCTTCAATGATGTACTATCTAAAGGCGCATTTTCATTTCAACAAGGATCAGTTTGCTGACCTGATGGTTATTTCCGGGGTAGCAGGCACTGTTTCACAGCTGGTTCTAATGCCCTTGCTGGCTCCAGCTTTAGGAGAGGAGAGGCTACTTTCGATAGGCCTCATTTTTAGCTGTGCACATATGTTTCTTTATGGCATTGCGTGGTCCTTCTGGGTGCCATATGCTGCTGCCATGTTTTCCATCTTTTATGTGTTCGCACAACCATGCATGCGAAGCATTGTATCGAAACAAGTTGGTCCGTCTGAGCAGGGGAAGGCTCAAGGGTGCATTTCAGGCATATGTTCACTTGCAAATGTTATATCTCCGATTGCTTTCTCTCCTCTCACAGCCTTGTTCCTGTCCGAAAAGGCACCATTTAATTTCCCTGGATTTAGTCTCATTTGCGTTGGATTTGCTGCGATGATAGCCTTTATTCAAAGCGTGATGATTAGGGCTGCTCCTTCCCTTTCGAGCCAAAGGAACAGTGGCAATTGCAATCACACGGAGCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1

Protein Analysis

413

Amino Acids

44.21

Weight (kDa)

8.4

Isoelectric Point (pI)

38.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	18 - 168	1.1e-14	Major Facilitator Superfamily
MFS_1	PF07690	217 - 386	5.9e-11	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009793)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42210 AT5G42210
fragaria_vesca	FvH4_2g37910 FvH4_2g37910
malus_domestica	MD08G1007300.v1.1 MD15G1006500.v1.1
prunus_persica	Prupe.1G359100_v2.0.a1
pyrus_communis	pycom08g00590 pycom15g00510
rosa_chinensis	RchiOBHm_Chr6g0303701
rosa_laevigata	RLG00000011054
rosa_multiflora	Rmu_co8304199.1_g000001 Rmu_sc0014789.1_g000006
rosa_roxburghii	Rroxscaffold_7G00164470
rosa_rugosa	Rorug06G0324100 Rorug06G0324100
rosa_samantha	Rh6AG438400 Rh6BG464700 Rh6CG450700 Rh6DG437400
rosa_wichuraiana	Rw6G037940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	901, 1096
AccBSI	CCGCTC	1 cut(s)	500
AccI	GTMKAC	1 cut(s)	222
AciI	CCGC	5 cut(s)	316, 372, 434, 498, 671
AclWI	GGATC	2 cut(s)	154, 741
AcsI	RAATTY	1 cut(s)	547
AfaI	GTAC	3 cut(s)	194, 452, 701
AfiI	CCNNNNNNNGG	2 cut(s)	107, 818
AflII	CTTAAG	1 cut(s)	592
AgsI	TTSAA	6 cut(s)	62, 552, 616, 693, 727, 1163
AjnI	CCWGG	2 cut(s)	16, 1111
AluBI	AGCT	6 cut(s)	140, 542, 641, 787, 815, 858
AluI	AGCT	6 cut(s)	140, 542, 641, 787, 815, 858
Alw21I	GWGCWC	3 cut(s)	35, 559, 865
Alw26I	GTCTC	2 cut(s)	400, 1127
Alw44I	GTGCAC	1 cut(s)	861
AlwI	GGATC	2 cut(s)	154, 741
AlwNI	CAGNNNCTG	1 cut(s)	776
AoxI	GGCC	2 cut(s)	679, 844
ApaLI	GTGCAC	1 cut(s)	861
ApeKI	GCWGC	7 cut(s)	264, 568, 641, 911, 914, 1142, 1181
ApoI	RAATTY	1 cut(s)	547
AspLEI	GCGC	1 cut(s)	715
AspS9I	GGNCC	2 cut(s)	891, 983
AsuC2I	CCSGG	1 cut(s)	763
AsuHPI	GGTGA	2 cut(s)	43, 103
AvaII	GGWCC	2 cut(s)	891, 983
BaeGI	GKGCMC	1 cut(s)	865
BanI	GGYRCC	2 cut(s)	901, 1096
BanII	GRGCYC	1 cut(s)	1236
Bbv12I	GWGCWC	3 cut(s)	35, 559, 865
BbvI	GCAGC	7 cut(s)	276, 580, 628, 898, 901, 1129, 1168
BccI	CCATC	2 cut(s)	745, 935
BciT130I	CCWGG	2 cut(s)	18, 1113
BcnI	CCSGG	1 cut(s)	763
BcoDI	GTCTC	2 cut(s)	400, 1127
BfaI	CTAG	2 cut(s)	668, 1237
BfrI	CTTAAG	1 cut(s)	592
BglI	GCCNNNNNGGC	1 cut(s)	293
BisI	GCNGC	8 cut(s)	265, 317, 569, 642, 912, 915, 1143, 1182
BlsI	GCNGC	8 cut(s)	266, 318, 570, 643, 913, 916, 1144, 1183
Bme1390I	CCNGG	3 cut(s)	18, 763, 1113
Bme18I	GGWCC	2 cut(s)	891, 983
BmgT120I	GGNCC	2 cut(s)	891, 983
BmiI	GGNNCC	5 cut(s)	376, 810, 903, 1098, 1233
BmrFI	CCNGG	3 cut(s)	18, 763, 1113
BmsI	GCATC	1 cut(s)	87
BpmI	CTGGAG	1 cut(s)	795
BpuEI	CTTGAG	1 cut(s)	990
BpuMI	CCSGG	1 cut(s)	763
BsaAI	YACGTR	1 cut(s)	450
BsaJI	CCNNGG	2 cut(s)	762, 1111
BsaWI	WCCGGW	2 cut(s)	53, 469
BsaXI	ACNNNNNCTCC	2 cut(s)	193, 223
Bsc4I	CCNNNNNNNGG	2 cut(s)	107, 818
Bse1I	ACTGG	1 cut(s)	93
Bse3DI	GCAATG	3 cut(s)	36, 581, 882
BseBI	CCWGG	2 cut(s)	18, 1113
BseDI	CCNNGG	2 cut(s)	762, 1111
BseGI	GGATG	2 cut(s)	520, 679
BseLI	CCNNNNNNNGG	2 cut(s)	107, 818
BseMI	GCAATG	3 cut(s)	36, 581, 882
BseMII	CTCAG	3 cut(s)	132, 572, 981
BseNI	ACTGG	1 cut(s)	93
BseRI	GAGGAG	2 cut(s)	839, 1056
BseSI	GKGCMC	1 cut(s)	865
BseXI	GCAGC	7 cut(s)	276, 580, 628, 898, 901, 1129, 1168
BseYI	CCCAGC	1 cut(s)	79
Bsh1285I	CGRYCG	1 cut(s)	72
BshFI	GGCC	2 cut(s)	681, 846
BshNI	GGYRCC	2 cut(s)	901, 1096
BsiEI	CGRYCG	1 cut(s)	72
BsiHKAI	GWGCWC	3 cut(s)	35, 559, 865
BsiSI	CCGG	3 cut(s)	54, 470, 762
BslI	CCNNNNNNNGG	2 cut(s)	107, 818
BsmAI	GTCTC	2 cut(s)	400, 1127
BsmBI	CGTCTC	1 cut(s)	400
BsnI	GGCC	2 cut(s)	681, 846
Bsp1286I	GDGCHC	4 cut(s)	35, 559, 865, 1236
Bsp143I	GATC	4 cut(s)	69, 159, 522, 733
BspACI	CCGC	5 cut(s)	316, 372, 434, 498, 671
BspANI	GGCC	2 cut(s)	681, 846
BspCNI	CTCAG	3 cut(s)	131, 571, 982
BspLI	GGNNCC	5 cut(s)	376, 810, 903, 1098, 1233
BspPI	GGATC	2 cut(s)	154, 741
BspT107I	GGYRCC	2 cut(s)	901, 1096
BspTI	CTTAAG	1 cut(s)	592
BsrBI	CCGCTC	1 cut(s)	500
BsrDI	GCAATG	3 cut(s)	36, 581, 882
BsrI	ACTGG	1 cut(s)	93
BssECI	CCNNGG	2 cut(s)	762, 1111
BssMI	GATC	4 cut(s)	69, 159, 522, 733
Bst2UI	CCWGG	2 cut(s)	18, 1113
Bst4CI	ACNGT	4 cut(s)	427, 510, 778, 1211
Bst6I	CTCTTC	1 cut(s)	16
BstAFI	CTTAAG	1 cut(s)	592
BstAPI	GCANNNNNTGC	1 cut(s)	650
BstBAI	YACGTR	1 cut(s)	450
BstC8I	GCNNGC	6 cut(s)	321, 573, 639, 772, 807, 956
BstDEI	CTNAG	3 cut(s)	118, 558, 990
BstEII	GGTNACC	1 cut(s)	110
BstF5I	GGATG	2 cut(s)	520, 679
BstHHI	GCGC	1 cut(s)	715
BstKTI	GATC	4 cut(s)	72, 162, 525, 736
BstMAI	GTCTC	2 cut(s)	400, 1127
BstMBI	GATC	4 cut(s)	69, 159, 522, 733
BstMCI	CGRYCG	1 cut(s)	72
BstMWI	GCNNNNNNNGC	8 cut(s)	151, 273, 293, 440, 650, 960, 1020, 1151
BstNI	CCWGG	2 cut(s)	18, 1113
BstNSI	RCATGY	1 cut(s)	958
BstPI	GGTNACC	1 cut(s)	110
BstSCI	CCNGG	3 cut(s)	16, 761, 1111
BstSLI	GKGCMC	1 cut(s)	865
BstSNI	TACGTA	1 cut(s)	450
BstV1I	GCAGC	7 cut(s)	276, 580, 628, 898, 901, 1129, 1168
BsuRI	GGCC	2 cut(s)	681, 846
BtgZI	GCGATG	1 cut(s)	1160
BtsCI	GGATG	2 cut(s)	520, 679
BtsI	GCAGTG	1 cut(s)	149
BtsIMutI	CAGTG	5 cut(s)	86, 149, 278, 774, 1216
Cac8I	GCNNGC	6 cut(s)	321, 573, 639, 772, 807, 956
CaiI	CAGNNNCTG	1 cut(s)	776
CfoI	GCGC	1 cut(s)	715
Cfr13I	GGNCC	2 cut(s)	891, 983
Csp6I	GTAC	3 cut(s)	193, 451, 700
CviAII	CATG	6 cut(s)	250, 454, 686, 919, 951, 955
CviQI	GTAC	3 cut(s)	193, 451, 700
DdeI	CTNAG	3 cut(s)	118, 558, 990
DpnI	GATC	4 cut(s)	71, 161, 524, 735
DpnII	GATC	4 cut(s)	69, 159, 522, 733
Eam1104I	CTCTTC	1 cut(s)	16
EarI	CTCTTC	1 cut(s)	16
Eco105I	TACGTA	1 cut(s)	450
Eco147I	AGGCCT	1 cut(s)	846
Eco24I	GRGCYC	1 cut(s)	1236
Eco47I	GGWCC	2 cut(s)	891, 983
Eco91I	GGTNACC	1 cut(s)	110
EcoO65I	GGTNACC	1 cut(s)	110
EcoRII	CCWGG	2 cut(s)	16, 1111
EcoT22I	ATGCAT	1 cut(s)	956
EcoT38I	GRGCYC	1 cut(s)	1236
Esp3I	CGTCTC	1 cut(s)	400
FaeI	CATG	6 cut(s)	253, 457, 689, 922, 954, 958
FalI	AAGNNNNNCTT	4 cut(s)	129, 161, 197, 229
FatI	CATG	6 cut(s)	249, 453, 685, 918, 950, 954
FauNDI	CATATG	3 cut(s)	867, 907, 1025
FblI	GTMKAC	1 cut(s)	222
Fnu4HI	GCNGC	8 cut(s)	265, 317, 569, 642, 912, 915, 1143, 1182
FokI	GGATG	2 cut(s)	527, 686
FriOI	GRGCYC	1 cut(s)	1236
Fsp4HI	GCNGC	8 cut(s)	265, 317, 569, 642, 912, 915, 1143, 1182
FspBI	CTAG	2 cut(s)	668, 1237
GlaI	GCGC	1 cut(s)	714
GluI	GCNGC	8 cut(s)	265, 317, 569, 642, 912, 915, 1143, 1182
GsaI	CCCAGC	1 cut(s)	83
GsuI	CTGGAG	1 cut(s)	795
HaeIII	GGCC	2 cut(s)	681, 846
HapII	CCGG	3 cut(s)	54, 470, 762
HhaI	GCGC	1 cut(s)	715
Hin1II	CATG	6 cut(s)	253, 457, 689, 922, 954, 958
Hin6I	GCGC	1 cut(s)	713
HinP1I	GCGC	1 cut(s)	713
HindIII	AAGCTT	1 cut(s)	138
HinfI	GANTC	3 cut(s)	336, 473, 536
HpaII	CCGG	3 cut(s)	54, 470, 762
HphI	GGTGA	2 cut(s)	43, 103
Hpy166II	GTNNAC	3 cut(s)	223, 863, 1031
Hpy188I	TCNGA	7 cut(s)	121, 335, 514, 561, 991, 1053, 1090
Hpy8I	GTNNAC	3 cut(s)	223, 863, 1031
Hpy99I	CGWCG	2 cut(s)	331, 631
HpyAV	CCTTC	7 cut(s)	254, 305, 597, 692, 904, 994, 1197
HpyCH4III	ACNGT	4 cut(s)	427, 510, 778, 1211
HpyCH4IV	ACGT	4 cut(s)	219, 329, 449, 629
HpyCH4V	TGCA	8 cut(s)	362, 568, 644, 863, 954, 1014, 1037, 1221
HpyF10VI	GCNNNNNNNGC	8 cut(s)	151, 273, 293, 440, 650, 960, 1020, 1151
HpyF3I	CTNAG	3 cut(s)	118, 558, 990
HpySE526I	ACGT	4 cut(s)	219, 329, 449, 629
Hsp92II	CATG	6 cut(s)	253, 457, 689, 922, 954, 958
HspAI	GCGC	1 cut(s)	713
Kzo9I	GATC	4 cut(s)	69, 159, 522, 733
LmnI	GCTCC	5 cut(s)	38, 505, 814, 1189, 1231
Lsp1109I	GCAGC	7 cut(s)	276, 580, 628, 898, 901, 1129, 1168
LweI	GCATC	1 cut(s)	87
MaeI	CTAG	2 cut(s)	668, 1237
MaeII	ACGT	4 cut(s)	219, 329, 449, 629
MaeIII	GTNAC	3 cut(s)	110, 445, 504
MalI	GATC	4 cut(s)	71, 161, 524, 735
MbiI	CCGCTC	1 cut(s)	500
MboI	GATC	4 cut(s)	69, 159, 522, 733
MboII	GAAGA	2 cut(s)	33, 205
MfeI	CAATTG	2 cut(s)	645, 1216
MhlI	GDGCHC	4 cut(s)	35, 559, 865, 1236
MluCI	AATT	6 cut(s)	168, 528, 547, 645, 1105, 1216
MlyI	GAGTC	1 cut(s)	345
MmeI	TCCRAC	3 cut(s)	492, 501, 1114
Mph1103I	ATGCAT	1 cut(s)	956
MseI	TTAA	3 cut(s)	531, 593, 1104
MslI	CAYNNNNRTG	1 cut(s)	949
MspA1I	CMGCKG	2 cut(s)	542, 787
MspCI	CTTAAG	1 cut(s)	592
MspI	CCGG	3 cut(s)	54, 470, 762
MspR9I	CCNGG	3 cut(s)	18, 763, 1113
MunI	CAATTG	2 cut(s)	645, 1216
MvaI	CCWGG	2 cut(s)	18, 1113
MwoI	GCNNNNNNNGC	8 cut(s)	151, 273, 293, 440, 650, 960, 1020, 1151
NciI	CCSGG	1 cut(s)	763
NdeI	CATATG	3 cut(s)	867, 907, 1025
NdeII	GATC	4 cut(s)	69, 159, 522, 733
NlaIII	CATG	6 cut(s)	253, 457, 689, 922, 954, 958
NlaIV	GGNNCC	5 cut(s)	376, 810, 903, 1098, 1233
NsiI	ATGCAT	1 cut(s)	956
NspI	RCATGY	1 cut(s)	958
PaeI	GCATGC	1 cut(s)	958
PceI	AGGCCT	1 cut(s)	846
PcsI	WCGNNNNNNNCGW	1 cut(s)	225
PfeI	GAWTC	2 cut(s)	473, 536
PfoI	TCCNGGA	1 cut(s)	16
PkrI	GCNGC	8 cut(s)	266, 318, 570, 643, 913, 916, 1144, 1183
Ple19I	CGATCG	1 cut(s)	72
PleI	GAGTC	1 cut(s)	344
PpsI	GAGTC	1 cut(s)	344
Ppu21I	YACGTR	1 cut(s)	450
Psp6I	CCWGG	2 cut(s)	16, 1111
PspEI	GGTNACC	1 cut(s)	110
PspFI	CCCAGC	1 cut(s)	79
PspGI	CCWGG	2 cut(s)	16, 1111
PspN4I	GGNNCC	5 cut(s)	376, 810, 903, 1098, 1233
PspPI	GGNCC	2 cut(s)	891, 983
PstNI	CAGNNNCTG	1 cut(s)	776
PvuI	CGATCG	1 cut(s)	72
PvuII	CAGCTG	2 cut(s)	542, 787
RsaI	GTAC	3 cut(s)	194, 452, 701
RsaNI	GTAC	3 cut(s)	193, 451, 700
RseI	CAYNNNNRTG	1 cut(s)	949
SaqAI	TTAA	3 cut(s)	531, 593, 1104
SatI	GCNGC	8 cut(s)	265, 317, 569, 642, 912, 915, 1143, 1182
Sau3AI	GATC	4 cut(s)	69, 159, 522, 733
Sau96I	GGNCC	2 cut(s)	891, 983
SchI	GAGTC	1 cut(s)	345
ScrFI	CCNGG	3 cut(s)	18, 763, 1113
SduI	GDGCHC	4 cut(s)	35, 559, 865, 1236
SfaNI	GCATC	1 cut(s)	87
SinI	GGWCC	2 cut(s)	891, 983
SmiMI	CAYNNNNRTG	1 cut(s)	949
SmlI	CTYRAG	2 cut(s)	592, 1005
SmoI	CTYRAG	2 cut(s)	592, 1005
SnaBI	TACGTA	1 cut(s)	450
SphI	GCATGC	1 cut(s)	958
Sse9I	AATT	6 cut(s)	168, 528, 547, 645, 1105, 1216
SseBI	AGGCCT	1 cut(s)	846
SsiI	CCGC	5 cut(s)	316, 372, 434, 498, 671
SspMI	CTAG	2 cut(s)	668, 1237
StuI	AGGCCT	1 cut(s)	846
StyD4I	CCNGG	3 cut(s)	16, 761, 1111
TaaI	ACNGT	4 cut(s)	427, 510, 778, 1211
TaiI	ACGT	4 cut(s)	222, 332, 452, 632
TaqI	TCGA	4 cut(s)	326, 839, 971, 1196
TasI	AATT	6 cut(s)	168, 528, 547, 645, 1105, 1216
TatI	WGTACW	1 cut(s)	699
TauI	GCSGC	1 cut(s)	319
TfiI	GAWTC	2 cut(s)	473, 536
Tru1I	TTAA	3 cut(s)	531, 593, 1104
Tru9I	TTAA	3 cut(s)	531, 593, 1104
TscAI	CASTG	5 cut(s)	93, 156, 278, 781, 1216
TseI	GCWGC	7 cut(s)	264, 568, 641, 911, 914, 1142, 1181
TspDTI	ATGAA	3 cut(s)	531, 674, 710
TspGWI	ACGGA	2 cut(s)	492, 975
TspRI	CASTG	5 cut(s)	93, 156, 278, 781, 1216
Vha464I	CTTAAG	1 cut(s)	592
VneI	GTGCAC	1 cut(s)	861
VpaK11BI	GGWCC	2 cut(s)	891, 983
XapI	RAATTY	1 cut(s)	547
XceI	RCATGY	1 cut(s)	958
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1208
XmiI	GTMKAC	1 cut(s)	222
XspI	CTAG	2 cut(s)	668, 1237
Zsp2I	ATGCAT	1 cut(s)	956

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.