Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0009565

Physical Location & Seq

Genomic Coordinates Forward (+)

348612 .. 350022

Gene Structure 1411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGCGGAAGCAAAGCACAGAATCCTTAAACTCCAAACAGGTTTAACGTTGTTGTTCGTTCTTGTTTTGAACGGATGCGCGCAGAGCTTGCCACCTTCGAAATACGATGGGTTTTGGTACGGACATCACCGAGTTGACTTGGATTCAATTCTGATCGAAGCCTTCTTCGACCCGGTCTGCCCAGACAGCAGGGACTCCTGGCCGCCCCTCAAACAAGCCGTCGAGTACTACTCCCCTCGCGTCTCGGTGGTGATTCACCTGTTACCCTTACCTTACCACGACAATGCTTTCGTTGGTTCTCGGGCTCTGCACATCGTAAATCAGCTGAAAAAATCTGCCACATTCCCGTTGTTGGAGTGGTTCTTCAAGAATCAGGAGAGGTATTACAATGCTCAAACTAGCAACATTTCCAGGGCTGCTGTTGTAAATGATATAGTGAACTCTGCCACACAAGTGATTGGGAACTCCTATCATAGCGCCCTTGAATCCGGCTTCAATGACCGGAAAACGGACCTCAAAACAAGGGTTTCATTCAAGTATAGCACTTCAAGAGGGGTGTATGGAACGCCTACTTTCTTTGTCAATGGATTTGTACTGCCAGATTCTGGATCCACTCTAGATCTTAATGGGTGGAAAAAAGTCATCGATCCATTAGTTGTCGGTAACGGGGTGCCAAGGAGCCAAGAAAATATGCACTTCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin_4

Protein Analysis

235

Amino Acids

26.35

Weight (kDa)

8.79

Isoelectric Point (pI)

37.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20225 AT1G76020 AT1G76020 AT1G76020
fragaria_vesca	FvH4_2g38030
malus_domestica	MD08G1008700.v1.1 MD15G1007500.v1.1
prunus_persica	Prupe.1G360400_v2.0.a1 Prupe.1G360400_v2.0.a1
pyrus_communis	pycom08g00690 pycom15g00600
rosa_chinensis	RchiOBHm_Chr6g0303571
rosa_laevigata	RLG00000011072
rosa_multiflora	Rmu_sc0007957.1_g000001 Rmu_ssc0000388.1_g000044
rosa_roxburghii	Rroxscaffold_7G00164620
rosa_rugosa	Rorug06G0322400
rosa_samantha	Rh6AG436900 Rh6BG466500 Rh6CG448800 Rh6DG435600
rosa_wichuraiana	Rw6G037810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	670
AccB7I	CCANNNNNTGG	1 cut(s)	605
AccII	CGCG	2 cut(s)	80, 240
AciI	CCGC	2 cut(s)	5, 203
AclI	AACGTT	1 cut(s)	47
AclWI	GGATC	3 cut(s)	603, 616, 641
AcoI	YGGCCR	1 cut(s)	200
AfaI	GTAC	3 cut(s)	119, 227, 594
AfiI	CCNNNNNNNGG	3 cut(s)	352, 508, 605
AgsI	TTSAA	7 cut(s)	70, 147, 367, 485, 496, 535, 549
AjnI	CCWGG	2 cut(s)	197, 410
AleI	CACNNNNGTG	1 cut(s)	452
AluBI	AGCT	2 cut(s)	87, 325
AluI	AGCT	2 cut(s)	87, 325
Alw26I	GTCTC	1 cut(s)	247
AlwI	GGATC	3 cut(s)	603, 616, 641
AlwNI	CAGNNNCTG	1 cut(s)	605
Ama87I	CYCGRG	1 cut(s)	300
AoxI	GGCC	1 cut(s)	200
ApeKI	GCWGC	1 cut(s)	416
ArsI	GACNNNNNNTTYG	4 cut(s)	204, 236, 272, 304
AspLEI	GCGC	3 cut(s)	80, 82, 479
AspS9I	GGNCC	1 cut(s)	511
AsuC2I	CCSGG	1 cut(s)	173
AsuHPI	GGTGA	3 cut(s)	119, 248, 262
AsuII	TTCGAA	1 cut(s)	98
AvaI	CYCGRG	1 cut(s)	300
AvaII	GGWCC	1 cut(s)	511
BamHI	GGATCC	1 cut(s)	608
BanI	GGYRCC	1 cut(s)	670
BanII	GRGCYC	1 cut(s)	307
BbvI	GCAGC	1 cut(s)	403
BccI	CCATC	1 cut(s)	101
BceAI	ACGGC	1 cut(s)	203
BciT130I	CCWGG	2 cut(s)	199, 412
BcnI	CCSGG	1 cut(s)	173
BcoDI	GTCTC	1 cut(s)	247
BfaI	CTAG	2 cut(s)	399, 617
BfoI	RGCGCY	1 cut(s)	480
BglII	AGATCT	1 cut(s)	619
BisI	GCNGC	2 cut(s)	203, 417
BlsI	GCNGC	2 cut(s)	204, 418
BmcAI	AGTACT	1 cut(s)	227
Bme1390I	CCNGG	3 cut(s)	173, 199, 412
Bme18I	GGWCC	1 cut(s)	511
BmeT110I	CYCGRG	1 cut(s)	300
BmgT120I	GGNCC	1 cut(s)	511
BmiI	GGNNCC	3 cut(s)	610, 672, 680
BmrFI	CCNGG	3 cut(s)	173, 199, 412
BmsI	GCATC	1 cut(s)	65
BplI	GAGNNNNNCTC	2 cut(s)	215, 247
Bpu14I	TTCGAA	1 cut(s)	98
BpuMI	CCSGG	1 cut(s)	173
Bsa29I	ATCGAT	1 cut(s)	645
BsaJI	CCNNGG	2 cut(s)	411, 674
BsaWI	WCCGGW	1 cut(s)	501
Bsc4I	CCNNNNNNNGG	3 cut(s)	352, 508, 605
BseBI	CCWGG	2 cut(s)	199, 412
BseCI	ATCGAT	1 cut(s)	645
BseDI	CCNNGG	2 cut(s)	411, 674
BseGI	GGATG	1 cut(s)	80
BseLI	CCNNNNNNNGG	3 cut(s)	352, 508, 605
BsePI	GCGCGC	1 cut(s)	78
BseXI	GCAGC	1 cut(s)	403
BsgI	GTGCAG	1 cut(s)	293
Bsh1236I	CGCG	2 cut(s)	80, 240
BshFI	GGCC	1 cut(s)	202
BshNI	GGYRCC	1 cut(s)	670
BshVI	ATCGAT	1 cut(s)	645
BsiHKCI	CYCGRG	1 cut(s)	300
BsiSI	CCGG	3 cut(s)	173, 489, 502
BslFI	GGGAC	1 cut(s)	206
BslI	CCNNNNNNNGG	3 cut(s)	352, 508, 605
BsmAI	GTCTC	1 cut(s)	247
BsmBI	CGTCTC	1 cut(s)	247
BsmFI	GGGAC	1 cut(s)	206
BsnI	GGCC	1 cut(s)	202
BsoBI	CYCGRG	1 cut(s)	300
Bsp119I	TTCGAA	1 cut(s)	98
Bsp1286I	GDGCHC	1 cut(s)	307
Bsp143I	GATC	4 cut(s)	153, 608, 619, 646
BspACI	CCGC	2 cut(s)	5, 203
BspANI	GGCC	1 cut(s)	202
BspDI	ATCGAT	1 cut(s)	645
BspFNI	CGCG	2 cut(s)	80, 240
BspLI	GGNNCC	3 cut(s)	610, 672, 680
BspPI	GGATC	3 cut(s)	603, 616, 641
BspT104I	TTCGAA	1 cut(s)	98
BspT107I	GGYRCC	1 cut(s)	670
BssECI	CCNNGG	2 cut(s)	411, 674
BssHII	GCGCGC	1 cut(s)	78
BssMI	GATC	4 cut(s)	153, 608, 619, 646
BssT1I	CCWWGG	1 cut(s)	674
Bst2UI	CCWGG	2 cut(s)	199, 412
BstAPI	GCANNNNNTGC	1 cut(s)	88
BstBI	TTCGAA	1 cut(s)	98
BstC8I	GCNNGC	2 cut(s)	80, 89
BstF5I	GGATG	1 cut(s)	80
BstFNI	CGCG	2 cut(s)	80, 240
BstH2I	RGCGCY	1 cut(s)	480
BstHHI	GCGC	3 cut(s)	80, 82, 479
BstKTI	GATC	4 cut(s)	156, 611, 622, 649
BstMAI	GTCTC	1 cut(s)	247
BstMBI	GATC	4 cut(s)	153, 608, 619, 646
BstMWI	GCNNNNNNNGC	3 cut(s)	84, 88, 186
BstNI	CCWGG	2 cut(s)	199, 412
BstSCI	CCNGG	3 cut(s)	171, 197, 410
BstUI	CGCG	2 cut(s)	80, 240
BstV1I	GCAGC	1 cut(s)	403
BstX2I	RGATCY	2 cut(s)	608, 619
BstYI	RGATCY	2 cut(s)	608, 619
Bsu15I	ATCGAT	1 cut(s)	645
BsuRI	GGCC	1 cut(s)	202
BsuTUI	ATCGAT	1 cut(s)	645
BtsCI	GGATG	1 cut(s)	80
Cac8I	GCNNGC	2 cut(s)	80, 89
CaiI	CAGNNNCTG	1 cut(s)	605
CfoI	GCGC	3 cut(s)	80, 82, 479
Cfr13I	GGNCC	1 cut(s)	511
ClaI	ATCGAT	1 cut(s)	645
CseI	GACGC	1 cut(s)	229
Csp6I	GTAC	3 cut(s)	118, 226, 593
CviJI	RGCY	9 cut(s)	87, 161, 202, 218, 305, 325, 416, 492, 681
CviKI_1	RGCY	9 cut(s)	87, 161, 202, 218, 305, 325, 416, 492, 681
CviQI	GTAC	3 cut(s)	118, 226, 593
DpnI	GATC	4 cut(s)	155, 610, 621, 648
DpnII	GATC	4 cut(s)	153, 608, 619, 646
EaeI	YGGCCR	1 cut(s)	200
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	674
Eco24I	GRGCYC	1 cut(s)	307
Eco47I	GGWCC	1 cut(s)	511
Eco88I	CYCGRG	1 cut(s)	300
EcoRII	CCWGG	2 cut(s)	197, 410
EcoT14I	CCWWGG	1 cut(s)	674
EcoT38I	GRGCYC	1 cut(s)	307
ErhI	CCWWGG	1 cut(s)	674
Esp3I	CGTCTC	1 cut(s)	247
FaiI	YATR	5 cut(s)	434, 474, 540, 561, 692
FaqI	GGGAC	1 cut(s)	206
Fnu4HI	GCNGC	2 cut(s)	203, 417
FokI	GGATG	1 cut(s)	87
FriOI	GRGCYC	1 cut(s)	307
Fsp4HI	GCNGC	2 cut(s)	203, 417
FspBI	CTAG	2 cut(s)	399, 617
GlaI	GCGC	3 cut(s)	79, 81, 478
GluI	GCNGC	2 cut(s)	203, 417
HaeII	RGCGCY	1 cut(s)	480
HaeIII	GGCC	1 cut(s)	202
HapII	CCGG	3 cut(s)	173, 489, 502
HgaI	GACGC	1 cut(s)	229
HhaI	GCGC	3 cut(s)	80, 82, 479
Hin6I	GCGC	3 cut(s)	78, 80, 477
HinP1I	GCGC	3 cut(s)	78, 80, 477
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HinfI	GANTC	7 cut(s)	21, 143, 194, 253, 370, 485, 602
HpaII	CCGG	3 cut(s)	173, 489, 502
HphI	GGTGA	3 cut(s)	119, 248, 262
Hpy166II	GTNNAC	2 cut(s)	136, 439
Hpy188I	TCNGA	1 cut(s)	153
Hpy188III	TCNNGA	5 cut(s)	367, 374, 549, 606, 617
Hpy8I	GTNNAC	2 cut(s)	136, 439
Hpy99I	CGWCG	1 cut(s)	224
HpyAV	CCTTC	2 cut(s)	105, 172
HpyCH4IV	ACGT	1 cut(s)	47
HpyCH4V	TGCA	2 cut(s)	310, 694
HpyF10VI	GCNNNNNNNGC	3 cut(s)	84, 88, 186
HpySE526I	ACGT	1 cut(s)	47
HspAI	GCGC	3 cut(s)	78, 80, 477
Kzo9I	GATC	4 cut(s)	153, 608, 619, 646
LmnI	GCTCC	1 cut(s)	678
Lsp1109I	GCAGC	1 cut(s)	403
LweI	GCATC	1 cut(s)	65
MaeI	CTAG	2 cut(s)	399, 617
MaeII	ACGT	1 cut(s)	47
MaeIII	GTNAC	2 cut(s)	261, 662
MalI	GATC	4 cut(s)	155, 610, 621, 648
MboI	GATC	4 cut(s)	153, 608, 619, 646
MboII	GAAGA	2 cut(s)	157, 355
MflI	RGATCY	2 cut(s)	608, 619
MhlI	GDGCHC	1 cut(s)	307
MluCI	AATT	1 cut(s)	147
MlyI	GAGTC	1 cut(s)	188
MmeI	TCCRAC	1 cut(s)	333
MnlI	CCTC	5 cut(s)	218, 246, 372, 524, 545
MseI	TTAA	3 cut(s)	27, 44, 624
MslI	CAYNNNNRTG	2 cut(s)	282, 452
MspA1I	CMGCKG	1 cut(s)	325
MspI	CCGG	3 cut(s)	173, 489, 502
MspR9I	CCNGG	3 cut(s)	173, 199, 412
MvaI	CCWGG	2 cut(s)	199, 412
MvnI	CGCG	2 cut(s)	80, 240
MwoI	GCNNNNNNNGC	3 cut(s)	84, 88, 186
NciI	CCSGG	1 cut(s)	173
NdeII	GATC	4 cut(s)	153, 608, 619, 646
NlaIV	GGNNCC	3 cut(s)	610, 672, 680
NspV	TTCGAA	1 cut(s)	98
OliI	CACNNNNGTG	1 cut(s)	452
PauI	GCGCGC	1 cut(s)	78
PfeI	GAWTC	6 cut(s)	21, 143, 253, 370, 485, 602
PflFI	GACNNNGTC	1 cut(s)	173
PflMI	CCANNNNNTGG	1 cut(s)	605
PkrI	GCNGC	2 cut(s)	204, 418
PleI	GAGTC	1 cut(s)	188
PpsI	GAGTC	1 cut(s)	188
Psp1406I	AACGTT	1 cut(s)	47
Psp6I	CCWGG	2 cut(s)	197, 410
PspGI	CCWGG	2 cut(s)	197, 410
PspN4I	GGNNCC	3 cut(s)	610, 672, 680
PspPI	GGNCC	1 cut(s)	511
PstNI	CAGNNNCTG	1 cut(s)	605
PsuI	RGATCY	2 cut(s)	608, 619
PsyI	GACNNNGTC	1 cut(s)	173
PteI	GCGCGC	1 cut(s)	78
PvuII	CAGCTG	1 cut(s)	325
RsaI	GTAC	3 cut(s)	119, 227, 594
RsaNI	GTAC	3 cut(s)	118, 226, 593
RseI	CAYNNNNRTG	2 cut(s)	282, 452
SaqAI	TTAA	3 cut(s)	27, 44, 624
SatI	GCNGC	2 cut(s)	203, 417
Sau3AI	GATC	4 cut(s)	153, 608, 619, 646
Sau96I	GGNCC	1 cut(s)	511
ScaI	AGTACT	1 cut(s)	227
SchI	GAGTC	1 cut(s)	188
ScrFI	CCNGG	3 cut(s)	173, 199, 412
SduI	GDGCHC	1 cut(s)	307
SetI	ASST	9 cut(s)	43, 50, 89, 97, 261, 274, 327, 383, 516
SfaNI	GCATC	1 cut(s)	65
SfuI	TTCGAA	1 cut(s)	98
SinI	GGWCC	1 cut(s)	511
SmiMI	CAYNNNNRTG	2 cut(s)	282, 452
Sse9I	AATT	1 cut(s)	147
SsiI	CCGC	2 cut(s)	5, 203
SspMI	CTAG	2 cut(s)	399, 617
StyD4I	CCNGG	3 cut(s)	171, 197, 410
StyI	CCWWGG	1 cut(s)	674
TaiI	ACGT	1 cut(s)	50
TaqI	TCGA	5 cut(s)	98, 156, 168, 222, 645
TasI	AATT	1 cut(s)	147
TatI	WGTACW	2 cut(s)	225, 592
TauI	GCSGC	1 cut(s)	205
TfiI	GAWTC	6 cut(s)	21, 143, 253, 370, 485, 602
Tru1I	TTAA	3 cut(s)	27, 44, 624
Tru9I	TTAA	3 cut(s)	27, 44, 624
TseI	GCWGC	1 cut(s)	416
TspDTI	ATGAA	1 cut(s)	519
TspGWI	ACGGA	3 cut(s)	87, 135, 524
Tth111I	GACNNNGTC	1 cut(s)	173
Van91I	CCANNNNNTGG	1 cut(s)	605
VpaK11BI	GGWCC	1 cut(s)	511
XbaI	TCTAGA	1 cut(s)	616
XspI	CTAG	2 cut(s)	399, 617
ZrmI	AGTACT	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.