pycom15g00630

UPF0496 protein At1g20180-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0011075
Physical Location & Seq
Reverse (-)
362270 .. 362772
503 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 357 bp
ATGATCATGTCTAAGATGAGGAAAATGAGGAAAAGCCTACGAACCAAGTTGGGATCTGCGTTCTCCAAGCCAAGAAGAGAAAAAGACAATGTCGGCGGCAATGGCTTCTCCAGCAAGTCAAGCGTGAACGAAGAATACATGGAAGTTTTCAGAACAAAGTCGTACGTAGAAATGTGGGATAGGGTTCACGAACAGCTGCCGAGCACTAGTACTAGTACTAGCCGGCTTCCTTCGTCTAGCTCGTCGCTTCCGTCTAATATGTTGTTGGACCGCACCGAATATTTGCTCGAACCACGGCAAGAAACCCTTAAAAACATCATCGATGAGGAGGGCTTAAATCTCCACCACACCGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF677

Protein Analysis

119

Amino Acids

13.62

Weight (kDa)

9.3

Isoelectric Point (pI)

59.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011075)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20180 AT1G20180
fragaria_vesca FvH4_2g38050
malus_domestica MD03G1275300.v1.1 MD08G1009100.v1.1 MD15G1007800.v1.1 MD15G1007900.v1.1
prunus_persica Prupe.1G360800_v2.0.a1 Prupe.1G360800_v2.0.a1
pyrus_communis pycom15g00630
rosa_chinensis RchiOBHm_Chr6g0303541
rosa_laevigata RLG00000011075
rosa_multiflora Rmu_ssc0000114.1_g000034
rosa_roxburghii Rroxscaffold_7G00164660
rosa_rugosa Rorug06G0322100
rosa_samantha Rh6AG436500 Rh6BG466900 Rh6CG448500 Rh6DG435300
rosa_wichuraiana Rw6G037780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 96, 271
AclWI GGATC 1 cut(s) 61
AfaI GTAC 3 cut(s) 164, 211, 217
AhlI ACTAGT 2 cut(s) 206, 212
AluBI AGCT 2 cut(s) 196, 240
AluI AGCT 2 cut(s) 196, 240
Alw21I GWGCWC 1 cut(s) 206
AlwI GGATC 1 cut(s) 61
ApeKI GCWGC 1 cut(s) 196
AspS9I GGNCC 1 cut(s) 268
AvaII GGWCC 1 cut(s) 268
Bbv12I GWGCWC 1 cut(s) 206
BbvI GCAGC 1 cut(s) 183
BceAI ACGGC 1 cut(s) 311
BclI TGATCA 1 cut(s) 3
BcuI ACTAGT 2 cut(s) 206, 212
BfaI CTAG 4 cut(s) 207, 213, 219, 237
BisI GCNGC 2 cut(s) 97, 197
BlsI GCNGC 2 cut(s) 98, 198
BmcAI AGTACT 2 cut(s) 211, 217
Bme18I GGWCC 1 cut(s) 268
BmgT120I GGNCC 1 cut(s) 268
BpmI CTGGAG 1 cut(s) 94
Bsa29I ATCGAT 1 cut(s) 321
BsaAI YACGTR 1 cut(s) 166
BsaJI CCNNGG 1 cut(s) 293
Bse118I RCCGGY 1 cut(s) 222
Bse3DI GCAATG 1 cut(s) 106
BseCI ATCGAT 1 cut(s) 321
BseDI CCNNGG 1 cut(s) 293
BseMI GCAATG 1 cut(s) 106
BseRI GAGGAG 1 cut(s) 341
BseXI GCAGC 1 cut(s) 183
BshVI ATCGAT 1 cut(s) 321
BsiHKAI GWGCWC 1 cut(s) 206
BsiSI CCGG 1 cut(s) 223
BsiWI CGTACG 1 cut(s) 162
Bsp1286I GDGCHC 1 cut(s) 206
Bsp143I GATC 2 cut(s) 3, 53
BspACI CCGC 2 cut(s) 96, 271
BspDI ATCGAT 1 cut(s) 321
BspPI GGATC 1 cut(s) 61
BsrDI GCAATG 1 cut(s) 106
BsrFI RCCGGY 1 cut(s) 222
BssAI RCCGGY 1 cut(s) 222
BssECI CCNNGG 1 cut(s) 293
BssMI GATC 2 cut(s) 3, 53
Bst6I CTCTTC 1 cut(s) 70
BstBAI YACGTR 1 cut(s) 166
BstC8I GCNNGC 1 cut(s) 224
BstDEI CTNAG 1 cut(s) 12
BstDSI CCRYGG 1 cut(s) 293
BstKTI GATC 2 cut(s) 6, 56
BstMBI GATC 2 cut(s) 3, 53
BstMWI GCNNNNNNNGC 3 cut(s) 102, 111, 120
BstSNI TACGTA 1 cut(s) 166
BstV1I GCAGC 1 cut(s) 183
BstX2I RGATCY 1 cut(s) 53
BstYI RGATCY 1 cut(s) 53
Bsu15I ATCGAT 1 cut(s) 321
BsuTUI ATCGAT 1 cut(s) 321
BtgI CCRYGG 1 cut(s) 293
Cac8I GCNNGC 1 cut(s) 224
Cfr10I RCCGGY 1 cut(s) 222
Cfr13I GGNCC 1 cut(s) 268
ClaI ATCGAT 1 cut(s) 321
Csp6I GTAC 3 cut(s) 163, 210, 216
CviAII CATG 2 cut(s) 7, 139
CviJI RGCY 8 cut(s) 36, 70, 105, 196, 222, 226, 240, 333
CviKI_1 RGCY 8 cut(s) 36, 70, 105, 196, 222, 226, 240, 333
CviQI GTAC 3 cut(s) 163, 210, 216
DdeI CTNAG 1 cut(s) 12
DpnI GATC 2 cut(s) 5, 55
DpnII GATC 2 cut(s) 3, 53
Eam1104I CTCTTC 1 cut(s) 70
EarI CTCTTC 1 cut(s) 70
Eco105I TACGTA 1 cut(s) 166
Eco47I GGWCC 1 cut(s) 268
FaeI CATG 2 cut(s) 10, 142
FaiI YATR 3 cut(s) 8, 140, 260
FalI AAGNNNNNCTT 2 cut(s) 291, 323
FatI CATG 2 cut(s) 6, 138
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 2 cut(s) 97, 197
Fsp4HI GCNGC 2 cut(s) 97, 197
FspBI CTAG 4 cut(s) 207, 213, 219, 237
GluI GCNGC 2 cut(s) 97, 197
GsuI CTGGAG 1 cut(s) 94
HapII CCGG 1 cut(s) 223
Hin1II CATG 2 cut(s) 10, 142
HpaII CCGG 1 cut(s) 223
Hpy166II GTNNAC 2 cut(s) 127, 187
Hpy188I TCNGA 1 cut(s) 152
Hpy188III TCNNGA 1 cut(s) 188
Hpy8I GTNNAC 2 cut(s) 127, 187
Hpy99I CGWCG 1 cut(s) 247
HpyAV CCTTC 1 cut(s) 240
HpyCH4IV ACGT 1 cut(s) 165
HpyF10VI GCNNNNNNNGC 3 cut(s) 102, 111, 120
HpyF3I CTNAG 1 cut(s) 12
HpySE526I ACGT 1 cut(s) 165
Hsp92II CATG 2 cut(s) 10, 142
KroI GCCGGC 1 cut(s) 222
KroNI GCCGGC 1 cut(s) 224
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 2 cut(s) 3, 53
LpnPI CCDG 2 cut(s) 124, 236
Lsp1109I GCAGC 1 cut(s) 183
MaeI CTAG 4 cut(s) 207, 213, 219, 237
MaeII ACGT 1 cut(s) 165
MalI GATC 2 cut(s) 5, 55
MboI GATC 2 cut(s) 3, 53
MboII GAAGA 2 cut(s) 87, 143
MflI RGATCY 1 cut(s) 53
MhlI GDGCHC 1 cut(s) 206
MmeI TCCRAC 1 cut(s) 246
MnlI CCTC 4 cut(s) 12, 21, 319, 322
MroNI GCCGGC 1 cut(s) 222
MseI TTAA 2 cut(s) 309, 335
MspA1I CMGCKG 1 cut(s) 196
MspI CCGG 1 cut(s) 223
MwoI GCNNNNNNNGC 3 cut(s) 102, 111, 120
NaeI GCCGGC 1 cut(s) 224
NdeII GATC 2 cut(s) 3, 53
NgoMIV GCCGGC 1 cut(s) 222
NlaIII CATG 2 cut(s) 10, 142
NmeAIII GCCGAG 1 cut(s) 225
PcsI WCGNNNNNNNCGW 2 cut(s) 239, 248
PdiI GCCGGC 1 cut(s) 224
Pfl23II CGTACG 1 cut(s) 162
PflFI GACNNNGTC 1 cut(s) 89
PkrI GCNGC 2 cut(s) 98, 198
Ppu21I YACGTR 1 cut(s) 166
PspLI CGTACG 1 cut(s) 162
PspPI GGNCC 1 cut(s) 268
PsrI GAACNNNNNNTAC 2 cut(s) 119, 151
PsuI RGATCY 1 cut(s) 53
PsyI GACNNNGTC 1 cut(s) 89
PvuII CAGCTG 1 cut(s) 196
RsaI GTAC 3 cut(s) 164, 211, 217
RsaNI GTAC 3 cut(s) 163, 210, 216
SaqAI TTAA 2 cut(s) 309, 335
SatI GCNGC 2 cut(s) 97, 197
Sau3AI GATC 2 cut(s) 3, 53
Sau96I GGNCC 1 cut(s) 268
ScaI AGTACT 2 cut(s) 211, 217
SduI GDGCHC 1 cut(s) 206
SetI ASST 3 cut(s) 168, 198, 242
SinI GGWCC 1 cut(s) 268
SnaBI TACGTA 1 cut(s) 166
SpeI ACTAGT 2 cut(s) 206, 212
SsiI CCGC 2 cut(s) 96, 271
SspI AATATT 1 cut(s) 281
SspMI CTAG 4 cut(s) 207, 213, 219, 237
TaiI ACGT 1 cut(s) 168
TaqI TCGA 2 cut(s) 288, 321
TatI WGTACW 2 cut(s) 209, 215
TauI GCSGC 1 cut(s) 99
Tru1I TTAA 2 cut(s) 309, 335
Tru9I TTAA 2 cut(s) 309, 335
TseI GCWGC 1 cut(s) 196
TspGWI ACGGA 1 cut(s) 240
Tth111I GACNNNGTC 1 cut(s) 89
VpaK11BI GGWCC 1 cut(s) 268
XspI CTAG 4 cut(s) 207, 213, 219, 237
ZrmI AGTACT 2 cut(s) 211, 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.