Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0004341

Physical Location & Seq

Genomic Coordinates Forward (+)

996255 .. 997157

Gene Structure 903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGCTGAAGAAAAAGTGATCGCCTGCCACTCTGTCGCCGCCTGGACCGAGCACCTCGAGAAGAGCAATGTCGACAAGAAACTGATTGTGGTCGACTTCACGGCTACATGGTGTGGACCTTGCCGGTTCATTGCACCCATATTCGCGGAGTTGGCTAGGAAGAACCCGGAAGTGACATTCCTAAAGGTGGACGTGGATGAGCTGAAGACTGTTACCGAGGAGTGGGGCGTGGAGGCAATGCCGACCTTCTTGTTCCTCAAGGAAGGCAAGGTTGTTGACAAGGTTGTGGGTGCTAAGAAAGAAGAGTTACAGCTCAAAGTTGTGAAGCATGCCGCTCCAGCTGATGTCGCAACTGCTTCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Pkinase_Tyr Thioredoxin

Protein Analysis

122

Amino Acids

13.35

Weight (kDa)

5.63

Isoelectric Point (pI)

16.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	9 - 104	5.6e-28	Thioredoxin
Thioredoxin_9	PF14595	20 - 89	3.1e-07	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004341)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51030
fragaria_vesca	FvH4_1g12360 FvH4_2g39210
malus_domestica	MD08G1023500.v1.1 MD15G1020900.v1.1 MD15G1251000.v1.1
prunus_persica	Prupe.1G372700_v2.0.a1 Prupe.7G163200_v2.0.a1 Prupe.7G163200_v2.0.a1
pyrus_communis	pycom08g01830 pycom15g01720 pycom15g01730
rosa_chinensis	RchiOBHm_Chr2g0100181 RchiOBHm_Chr6g0301861
rosa_laevigata	RLG00000011215 RLG00000011218 RLG00000016944
rosa_multiflora	Rmu_co8455903.1_g000001 Rmu_sc0000407.1_g000008 Rmu_sc0002547.1_g000002 Rmu_sc0028483.1_g000002
rosa_roxburghii	Rroxscaffold_2G00142490 Rroxscaffold_7G00166330
rosa_rugosa	Rorug06G0310500
rosa_samantha	Rh2BG138800 Rh2DG140800 Rh6AG422300 Rh6BG429000 Rh6CG435600 Rh6DG422400
rosa_wichuraiana	Rw2G010570 Rw6G036580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	335
AccI	GTMKAC	2 cut(s)	72, 93
AccII	CGCG	1 cut(s)	146
AciI	CCGC	3 cut(s)	39, 146, 333
AcuI	CTGAAG	2 cut(s)	27, 224
AfiI	CCNNNNNNNGG	2 cut(s)	187, 222
AjiI	CACGTC	1 cut(s)	193
AjnI	CCWGG	1 cut(s)	41
AluBI	AGCT	3 cut(s)	202, 313, 341
AluI	AGCT	3 cut(s)	202, 313, 341
Alw21I	GWGCWC	1 cut(s)	54
Ama87I	CYCGRG	1 cut(s)	56
AspS9I	GGNCC	2 cut(s)	45, 116
AsuC2I	CCSGG	1 cut(s)	167
AvaI	CYCGRG	1 cut(s)	56
AvaII	GGWCC	2 cut(s)	45, 116
BbsI	GAAGAC	1 cut(s)	212
Bbv12I	GWGCWC	1 cut(s)	54
BceAI	ACGGC	1 cut(s)	117
BciT130I	CCWGG	1 cut(s)	43
BcnI	CCSGG	1 cut(s)	167
BfaI	CTAG	1 cut(s)	156
BisI	GCNGC	2 cut(s)	39, 333
BlsI	GCNGC	2 cut(s)	40, 334
Bme1390I	CCNGG	2 cut(s)	43, 167
Bme18I	GGWCC	2 cut(s)	45, 116
BmeT110I	CYCGRG	1 cut(s)	56
BmgBI	CACGTC	1 cut(s)	193
BmgT120I	GGNCC	2 cut(s)	45, 116
BmrFI	CCNGG	2 cut(s)	43, 167
BpiI	GAAGAC	1 cut(s)	212
BpmI	CTGGAG	1 cut(s)	321
BpuEI	CTTGAG	1 cut(s)	242
BpuMI	CCSGG	1 cut(s)	167
BsaJI	CCNNGG	1 cut(s)	216
Bsc4I	CCNNNNNNNGG	2 cut(s)	187, 222
Bse118I	RCCGGY	1 cut(s)	123
Bse3DI	GCAATG	3 cut(s)	73, 129, 243
BseBI	CCWGG	1 cut(s)	43
BseDI	CCNNGG	1 cut(s)	216
BseGI	GGATG	1 cut(s)	202
BseLI	CCNNNNNNNGG	2 cut(s)	187, 222
BseMI	GCAATG	3 cut(s)	73, 129, 243
BseRI	GAGGAG	1 cut(s)	233
Bsh1236I	CGCG	1 cut(s)	146
BsiHKAI	GWGCWC	1 cut(s)	54
BsiHKCI	CYCGRG	1 cut(s)	56
BsiSI	CCGG	2 cut(s)	124, 167
BslI	CCNNNNNNNGG	2 cut(s)	187, 222
BsoBI	CYCGRG	1 cut(s)	56
Bsp1286I	GDGCHC	1 cut(s)	54
Bsp143I	GATC	1 cut(s)	18
BspACI	CCGC	3 cut(s)	39, 146, 333
BspFNI	CGCG	1 cut(s)	146
BspQI	GCTCTTC	1 cut(s)	56
BsrBI	CCGCTC	1 cut(s)	335
BsrDI	GCAATG	3 cut(s)	73, 129, 243
BsrFI	RCCGGY	1 cut(s)	123
BssAI	RCCGGY	1 cut(s)	123
BssECI	CCNNGG	1 cut(s)	216
BssMI	GATC	1 cut(s)	18
Bst2UI	CCWGG	1 cut(s)	43
Bst4CI	ACNGT	1 cut(s)	211
Bst6I	CTCTTC	2 cut(s)	56, 297
BstC8I	GCNNGC	2 cut(s)	25, 330
BstDEI	CTNAG	2 cut(s)	294, 363
BstF5I	GGATG	1 cut(s)	202
BstFNI	CGCG	1 cut(s)	146
BstKTI	GATC	1 cut(s)	21
BstMBI	GATC	1 cut(s)	18
BstMWI	GCNNNNNNNGC	3 cut(s)	152, 338, 347
BstNI	CCWGG	1 cut(s)	43
BstNSI	RCATGY	1 cut(s)	332
BstSCI	CCNGG	2 cut(s)	41, 165
BstUI	CGCG	1 cut(s)	146
BstV2I	GAAGAC	1 cut(s)	212
BtrI	CACGTC	1 cut(s)	193
BtsCI	GGATG	1 cut(s)	202
Cac8I	GCNNGC	2 cut(s)	25, 330
Cfr10I	RCCGGY	1 cut(s)	123
Cfr13I	GGNCC	2 cut(s)	45, 116
CviAII	CATG	2 cut(s)	108, 329
CviJI	RGCY	6 cut(s)	5, 104, 155, 202, 313, 341
CviKI_1	RGCY	6 cut(s)	5, 104, 155, 202, 313, 341
DdeI	CTNAG	2 cut(s)	294, 363
DpnI	GATC	1 cut(s)	20
DpnII	GATC	1 cut(s)	18
Eam1104I	CTCTTC	2 cut(s)	56, 297
EarI	CTCTTC	2 cut(s)	56, 297
Eco47I	GGWCC	2 cut(s)	45, 116
Eco57I	CTGAAG	2 cut(s)	27, 224
Eco88I	CYCGRG	1 cut(s)	56
EcoRII	CCWGG	1 cut(s)	41
FaeI	CATG	2 cut(s)	111, 332
FaiI	YATR	3 cut(s)	109, 140, 330
FatI	CATG	2 cut(s)	107, 328
FblI	GTMKAC	2 cut(s)	72, 93
Fnu4HI	GCNGC	2 cut(s)	39, 333
FokI	GGATG	1 cut(s)	209
Fsp4HI	GCNGC	2 cut(s)	39, 333
FspBI	CTAG	1 cut(s)	156
GluI	GCNGC	2 cut(s)	39, 333
GsuI	CTGGAG	1 cut(s)	321
HapII	CCGG	2 cut(s)	124, 167
Hin1II	CATG	2 cut(s)	111, 332
HincII	GTYRAC	3 cut(s)	73, 94, 277
HindII	GTYRAC	3 cut(s)	73, 94, 277
HpaII	CCGG	2 cut(s)	124, 167
Hpy166II	GTNNAC	5 cut(s)	73, 94, 116, 190, 277
Hpy188III	TCNNGA	1 cut(s)	58
Hpy8I	GTNNAC	5 cut(s)	73, 94, 116, 190, 277
HpyAV	CCTTC	2 cut(s)	256, 257
HpyCH4III	ACNGT	1 cut(s)	211
HpyCH4IV	ACGT	1 cut(s)	192
HpyCH4V	TGCA	1 cut(s)	134
HpyF10VI	GCNNNNNNNGC	3 cut(s)	152, 338, 347
HpyF3I	CTNAG	2 cut(s)	294, 363
HpySE526I	ACGT	1 cut(s)	192
Hsp92II	CATG	2 cut(s)	111, 332
Kzo9I	GATC	1 cut(s)	18
LguI	GCTCTTC	1 cut(s)	56
LmnI	GCTCC	1 cut(s)	340
LpnPI	CCDG	6 cut(s)	28, 37, 55, 137, 180, 351
MaeI	CTAG	1 cut(s)	156
MaeII	ACGT	1 cut(s)	192
MaeIII	GTNAC	3 cut(s)	172, 211, 306
MalI	GATC	1 cut(s)	20
MbiI	CCGCTC	1 cut(s)	335
MboI	GATC	1 cut(s)	18
MboII	GAAGA	5 cut(s)	20, 73, 172, 217, 314
MhlI	GDGCHC	1 cut(s)	54
MnlI	CCTC	4 cut(s)	65, 211, 226, 266
MspA1I	CMGCKG	1 cut(s)	341
MspI	CCGG	2 cut(s)	124, 167
MspR9I	CCNGG	2 cut(s)	43, 167
MvaI	CCWGG	1 cut(s)	43
MvnI	CGCG	1 cut(s)	146
MwoI	GCNNNNNNNGC	3 cut(s)	152, 338, 347
NciI	CCSGG	1 cut(s)	167
NdeII	GATC	1 cut(s)	18
NlaIII	CATG	2 cut(s)	111, 332
NmuCI	GTSAC	1 cut(s)	172
NspI	RCATGY	1 cut(s)	332
PaeI	GCATGC	1 cut(s)	332
PaeR7I	CTCGAG	1 cut(s)	56
PciSI	GCTCTTC	1 cut(s)	56
PkrI	GCNGC	2 cut(s)	40, 334
Psp6I	CCWGG	1 cut(s)	41
PspGI	CCWGG	1 cut(s)	41
PspPI	GGNCC	2 cut(s)	45, 116
PvuII	CAGCTG	1 cut(s)	341
SalI	GTCGAC	2 cut(s)	71, 92
SapI	GCTCTTC	1 cut(s)	56
SatI	GCNGC	2 cut(s)	39, 333
Sau3AI	GATC	1 cut(s)	18
Sau96I	GGNCC	2 cut(s)	45, 116
ScrFI	CCNGG	2 cut(s)	43, 167
SduI	GDGCHC	1 cut(s)	54
Sfr274I	CTCGAG	1 cut(s)	56
SinI	GGWCC	2 cut(s)	45, 116
SlaI	CTCGAG	1 cut(s)	56
SmlI	CTYRAG	2 cut(s)	56, 257
SmoI	CTYRAG	2 cut(s)	56, 257
SphI	GCATGC	1 cut(s)	332
SsiI	CCGC	3 cut(s)	39, 146, 333
SspMI	CTAG	1 cut(s)	156
StyD4I	CCNGG	2 cut(s)	41, 165
TaaI	ACNGT	1 cut(s)	211
TaiI	ACGT	1 cut(s)	195
TaqI	TCGA	3 cut(s)	57, 72, 93
TaqII	GACCGA	1 cut(s)	62
TauI	GCSGC	2 cut(s)	41, 335
TseFI	GTSAC	1 cut(s)	172
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	1 cut(s)	118
VpaK11BI	GGWCC	2 cut(s)	45, 116
XceI	RCATGY	1 cut(s)	332
XhoI	CTCGAG	1 cut(s)	56
XmiI	GTMKAC	2 cut(s)	72, 93
XspI	CTAG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.