Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0006707

Physical Location & Seq

Genomic Coordinates Reverse (-)

1632653 .. 1634533

Gene Structure 1881 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGAAGGCATCTTTGAAGGGCAAGTATGAAACTGACAAGAGCGGTGCCGCCGCAAACGTCGCCTTCTTCGCCAGCGATGTCAAGTTCCGAGCTTCCCTCACCGATGCCACCTTCGCCGCCGGACCCAGCTTAAACGGCCTGGTCCTCGCCGTCGAGAAACCCGGTTCCTTCATCGTCGATTACAACGTCCCCAAACAGGACTTGAGGTTTCAGTTCATGAACTCGGTTAGGGTTGTGGGGAAGCCGTTGAATTTGAATTACATTCACATGAGGGGAGACAACCGGACGATTCTGGACGGAACCCTGGTGCTCGATTCGGCCAACAAGGTGTCGGCGAATCACGTGCTCGGCTCGAGGAACGGGAAGTTCAAGTACTCTTATCTGCACGGCGGAGCGACGACATTTGAGCCGTCGTATGATTTGGCCAAGAATTCGTGGGATTTCGCGGTGGCCCAGAGGGTTTATGATGATGTTTTCAGGGCTTCGTACCTGACGTCGAGCAAGTTGTTGGGGTTGGAGTGGTCGAGGAGTTCTAAAATCAATGGCTCTTTTAAGGTTTCAGCATCTGTCAATTTGGCGGAGGAACGAAAGATGCCAACATTAACTGCTGAGAGTACCTGGGATTTTGAGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005261 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0009507 GO:0009513 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0015075 GO:0015267 GO:0015288 GO:0015318 GO:0016020 GO:0016021 GO:0019867 GO:0022803 GO:0022829 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032879 GO:0032991 GO:0034220 GO:0034425 GO:0034426 GO:0034762 GO:0034765 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046930 GO:0050789 GO:0051049 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0098588 GO:0098655 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

212

Amino Acids

23.26

Weight (kDa)

9.3

Isoelectric Point (pI)

20.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006707)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45170 AT1G45170 AT5G42960
fragaria_vesca	FvH4_2g39980
malus_domestica	MD01G1018700.v1.1 MD08G1033600.v1.1 MD15G1030300.v1.1
prunus_persica	Prupe.1G381300_v2.0.a1
pyrus_communis	pycom08g02690 pycom15g02660
rosa_chinensis	RchiOBHm_Chr6g0300771
rosa_laevigata	RLG00000001484 RLG00000011303
rosa_multiflora	Rmu_sc0028577.1_g000002
rosa_roxburghii	Rroxscaffold_5G00352990 Rroxscaffold_7G00167430 Rroxscaffold_7G00213200
rosa_rugosa	Rorug06G0299100
rosa_samantha	Rh1CG245300 Rh2BG493100 Rh5AG065000 Rh6AG411900 Rh6BG133300 Rh6BG419100 Rh6CG426600
rosa_wichuraiana	Rw7G034350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	497
AccB1I	GGYRCC	1 cut(s)	44
AccBSI	CCGCTC	1 cut(s)	42
AccII	CGCG	1 cut(s)	446
AciI	CCGC	7 cut(s)	42, 48, 51, 117, 390, 446, 578
AcoI	YGGCCR	2 cut(s)	318, 423
AcsI	RAATTY	2 cut(s)	250, 430
AcvI	CACGTG	1 cut(s)	343
AcyI	GRCGYC	1 cut(s)	494
AfaI	GTAC	3 cut(s)	374, 488, 616
AfiI	CCNNNNNNNGG	1 cut(s)	196
AgsI	TTSAA	4 cut(s)	16, 250, 256, 370
AjnI	CCWGG	3 cut(s)	138, 303, 617
AluBI	AGCT	2 cut(s)	92, 129
AluI	AGCT	2 cut(s)	92, 129
Alw21I	GWGCWC	2 cut(s)	312, 348
Alw26I	GTCTC	1 cut(s)	270
AlwNI	CAGNNNCTG	1 cut(s)	566
Ama87I	CYCGRG	1 cut(s)	352
AoxI	GGCC	4 cut(s)	136, 318, 423, 450
ApoI	RAATTY	2 cut(s)	250, 430
AspS9I	GGNCC	3 cut(s)	122, 142, 451
AsuC2I	CCSGG	1 cut(s)	162
AsuHPI	GGTGA	1 cut(s)	91
AvaI	CYCGRG	1 cut(s)	352
AvaII	GGWCC	2 cut(s)	122, 142
BalI	TGGCCA	1 cut(s)	425
BanI	GGYRCC	1 cut(s)	44
BarI	GAAGNNNNNNTAC	2 cut(s)	356, 388
BbrPI	CACGTG	1 cut(s)	343
Bbv12I	GWGCWC	2 cut(s)	312, 348
BceAI	ACGGC	5 cut(s)	134, 151, 229, 394, 403
BcgI	CGANNNNNNTGC	2 cut(s)	325, 359
BciT130I	CCWGG	3 cut(s)	140, 305, 619
BcnI	CCSGG	1 cut(s)	162
BcoDI	GTCTC	1 cut(s)	270
BisI	GCNGC	3 cut(s)	48, 51, 117
BlsI	GCNGC	3 cut(s)	49, 52, 118
BmcAI	AGTACT	1 cut(s)	374
Bme1390I	CCNGG	4 cut(s)	140, 162, 305, 619
Bme18I	GGWCC	2 cut(s)	122, 142
BmeT110I	CYCGRG	1 cut(s)	352
BmgT120I	GGNCC	3 cut(s)	122, 142, 451
BmiI	GGNNCC	4 cut(s)	46, 124, 166, 301
BmrFI	CCNGG	4 cut(s)	140, 162, 305, 619
BmsI	GCATC	4 cut(s)	17, 94, 572, 582
BplI	GAGNNNNNCTC	2 cut(s)	81, 113
BpuEI	CTTGAG	1 cut(s)	223
BpuMI	CCSGG	1 cut(s)	162
BsaAI	YACGTR	1 cut(s)	343
BsaHI	GRCGYC	1 cut(s)	494
BsaJI	CCNNGG	2 cut(s)	303, 618
BsaWI	WCCGGW	1 cut(s)	282
Bsc4I	CCNNNNNNNGG	1 cut(s)	196
BseBI	CCWGG	3 cut(s)	140, 305, 619
BseDI	CCNNGG	2 cut(s)	303, 618
BseLI	CCNNNNNNNGG	1 cut(s)	196
BseMII	CTCAG	1 cut(s)	600
BseRI	GAGGAG	1 cut(s)	541
BseYI	CCCAGC	1 cut(s)	125
BsgI	GTGCAG	1 cut(s)	368
Bsh1236I	CGCG	1 cut(s)	446
BshFI	GGCC	4 cut(s)	138, 320, 425, 452
BshNI	GGYRCC	1 cut(s)	44
BsiHKAI	GWGCWC	2 cut(s)	312, 348
BsiHKCI	CYCGRG	1 cut(s)	352
BsiSI	CCGG	3 cut(s)	120, 162, 283
BslFI	GGGAC	1 cut(s)	173
BslI	CCNNNNNNNGG	1 cut(s)	196
BsmAI	GTCTC	1 cut(s)	270
BsmFI	GGGAC	1 cut(s)	173
BsnI	GGCC	4 cut(s)	138, 320, 425, 452
BsoBI	CYCGRG	1 cut(s)	352
Bsp1286I	GDGCHC	2 cut(s)	312, 348
BspACI	CCGC	7 cut(s)	42, 48, 51, 117, 390, 446, 578
BspANI	GGCC	4 cut(s)	138, 320, 425, 452
BspCNI	CTCAG	1 cut(s)	601
BspFNI	CGCG	1 cut(s)	446
BspHI	TCATGA	1 cut(s)	216
BspLI	GGNNCC	4 cut(s)	46, 124, 166, 301
BspT107I	GGYRCC	1 cut(s)	44
BsrBI	CCGCTC	1 cut(s)	42
BssECI	CCNNGG	2 cut(s)	303, 618
BssNI	GRCGYC	1 cut(s)	494
Bst2UI	CCWGG	3 cut(s)	140, 305, 619
BstACI	GRCGYC	1 cut(s)	494
BstBAI	YACGTR	1 cut(s)	343
BstC8I	GCNNGC	1 cut(s)	73
BstDEI	CTNAG	1 cut(s)	609
BstFNI	CGCG	1 cut(s)	446
BstMAI	GTCTC	1 cut(s)	270
BstMWI	GCNNNNNNNGC	4 cut(s)	59, 68, 113, 135
BstNI	CCWGG	3 cut(s)	140, 305, 619
BstSCI	CCNGG	4 cut(s)	138, 160, 303, 617
BstUI	CGCG	1 cut(s)	446
BsuRI	GGCC	4 cut(s)	138, 320, 425, 452
BtgZI	GCGATG	1 cut(s)	90
Cac8I	GCNNGC	1 cut(s)	73
CaiI	CAGNNNCTG	1 cut(s)	566
CciI	TCATGA	1 cut(s)	216
Cfr13I	GGNCC	3 cut(s)	122, 142, 451
Csp6I	GTAC	3 cut(s)	373, 487, 615
CviAII	CATG	2 cut(s)	217, 268
CviQI	GTAC	3 cut(s)	373, 487, 615
DdeI	CTNAG	1 cut(s)	609
EaeI	YGGCCR	2 cut(s)	318, 423
EciI	GGCGGA	2 cut(s)	405, 593
Eco47I	GGWCC	2 cut(s)	122, 142
Eco72I	CACGTG	1 cut(s)	343
Eco88I	CYCGRG	1 cut(s)	352
EcoRI	GAATTC	1 cut(s)	430
EcoRII	CCWGG	3 cut(s)	138, 303, 617
FaeI	CATG	2 cut(s)	220, 271
FaiI	YATR	5 cut(s)	27, 218, 269, 417, 465
FaqI	GGGAC	1 cut(s)	173
FatI	CATG	2 cut(s)	216, 267
Fnu4HI	GCNGC	3 cut(s)	48, 51, 117
Fsp4HI	GCNGC	3 cut(s)	48, 51, 117
GluI	GCNGC	3 cut(s)	48, 51, 117
GsaI	CCCAGC	1 cut(s)	129
HaeIII	GGCC	4 cut(s)	138, 320, 425, 452
HapII	CCGG	3 cut(s)	120, 162, 283
Hin1I	GRCGYC	1 cut(s)	494
Hin1II	CATG	2 cut(s)	220, 271
HinfI	GANTC	3 cut(s)	289, 314, 337
HpaII	CCGG	3 cut(s)	120, 162, 283
HphI	GGTGA	1 cut(s)	91
Hpy188I	TCNGA	1 cut(s)	89
Hpy188III	TCNNGA	3 cut(s)	154, 217, 293
Hpy99I	CGWCG	6 cut(s)	62, 155, 179, 400, 415, 499
HpyAV	CCTTC	4 cut(s)	10, 73, 121, 178
HpyCH4IV	ACGT	4 cut(s)	57, 186, 342, 494
HpyCH4V	TGCA	1 cut(s)	385
HpyF10VI	GCNNNNNNNGC	4 cut(s)	59, 68, 113, 135
HpyF3I	CTNAG	1 cut(s)	609
HpySE526I	ACGT	4 cut(s)	57, 186, 342, 494
Hsp92I	GRCGYC	1 cut(s)	494
Hsp92II	CATG	2 cut(s)	220, 271
LmnI	GCTCC	1 cut(s)	392
LweI	GCATC	4 cut(s)	17, 94, 572, 582
MaeII	ACGT	4 cut(s)	57, 186, 342, 494
MbiI	CCGCTC	1 cut(s)	42
MboII	GAAGA	1 cut(s)	58
MhlI	GDGCHC	2 cut(s)	312, 348
MlsI	TGGCCA	1 cut(s)	425
MluCI	AATT	4 cut(s)	250, 256, 430, 571
MluNI	TGGCCA	1 cut(s)	425
MmeI	TCCRAC	1 cut(s)	495
MnlI	CCTC	8 cut(s)	107, 155, 198, 264, 348, 450, 519, 574
Mox20I	TGGCCA	1 cut(s)	425
MscI	TGGCCA	1 cut(s)	425
MseI	TTAA	3 cut(s)	131, 552, 602
MslI	CAYNNNNRTG	1 cut(s)	266
Msp20I	TGGCCA	1 cut(s)	425
MspI	CCGG	3 cut(s)	120, 162, 283
MspR9I	CCNGG	4 cut(s)	140, 162, 305, 619
MvaI	CCWGG	3 cut(s)	140, 305, 619
MvnI	CGCG	1 cut(s)	446
MwoI	GCNNNNNNNGC	4 cut(s)	59, 68, 113, 135
NciI	CCSGG	1 cut(s)	162
NlaIII	CATG	2 cut(s)	220, 271
NlaIV	GGNNCC	4 cut(s)	46, 124, 166, 301
NmeAIII	GCCGAG	1 cut(s)	327
PaeR7I	CTCGAG	1 cut(s)	352
PagI	TCATGA	1 cut(s)	216
PcsI	WCGNNNNNNNCGW	2 cut(s)	183, 491
PfeI	GAWTC	3 cut(s)	289, 314, 337
PkrI	GCNGC	3 cut(s)	49, 52, 118
PmaCI	CACGTG	1 cut(s)	343
PmlI	CACGTG	1 cut(s)	343
Ppu21I	YACGTR	1 cut(s)	343
Psp6I	CCWGG	3 cut(s)	138, 303, 617
PspCI	CACGTG	1 cut(s)	343
PspFI	CCCAGC	1 cut(s)	125
PspGI	CCWGG	3 cut(s)	138, 303, 617
PspN4I	GGNNCC	4 cut(s)	46, 124, 166, 301
PspPI	GGNCC	3 cut(s)	122, 142, 451
PspXI	VCTCGAGB	1 cut(s)	352
PstNI	CAGNNNCTG	1 cut(s)	566
RsaI	GTAC	3 cut(s)	374, 488, 616
RsaNI	GTAC	3 cut(s)	373, 487, 615
RseI	CAYNNNNRTG	1 cut(s)	266
SaqAI	TTAA	3 cut(s)	131, 552, 602
SatI	GCNGC	3 cut(s)	48, 51, 117
Sau96I	GGNCC	3 cut(s)	122, 142, 451
ScaI	AGTACT	1 cut(s)	374
ScrFI	CCNGG	4 cut(s)	140, 162, 305, 619
SduI	GDGCHC	2 cut(s)	312, 348
SfaNI	GCATC	4 cut(s)	17, 94, 572, 582
Sfr274I	CTCGAG	1 cut(s)	352
SinI	GGWCC	2 cut(s)	122, 142
SlaI	CTCGAG	1 cut(s)	352
SmiMI	CAYNNNNRTG	1 cut(s)	266
SmlI	CTYRAG	2 cut(s)	202, 352
SmoI	CTYRAG	2 cut(s)	202, 352
Sse9I	AATT	4 cut(s)	250, 256, 430, 571
SsiI	CCGC	7 cut(s)	42, 48, 51, 117, 390, 446, 578
StyD4I	CCNGG	4 cut(s)	138, 160, 303, 617
TaiI	ACGT	4 cut(s)	60, 189, 345, 497
TaqI	TCGA	6 cut(s)	153, 177, 312, 353, 497, 524
TasI	AATT	4 cut(s)	250, 256, 430, 571
TatI	WGTACW	1 cut(s)	372
TauI	GCSGC	3 cut(s)	50, 53, 119
TfiI	GAWTC	3 cut(s)	289, 314, 337
Tru1I	TTAA	3 cut(s)	131, 552, 602
Tru9I	TTAA	3 cut(s)	131, 552, 602
TspDTI	ATGAA	5 cut(s)	17, 42, 160, 205, 233
TspGWI	ACGGA	1 cut(s)	312
VpaK11BI	GGWCC	2 cut(s)	122, 142
XapI	RAATTY	2 cut(s)	250, 430
XhoI	CTCGAG	1 cut(s)	352
ZraI	GACGTC	1 cut(s)	495
ZrmI	AGTACT	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.