pycom15g04480

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
2677358 .. 2678580
1223 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 939 bp
ATGGAGTTCAAGTTCAAAGACGAAAAGAATTTGGAGCAGCGATTGGAGGAGCTCCACAAGGACGTTTCGAGGAAGCAGAAATTCGAAGACGCCGTCGCCGCCCTGAATTCGCTGCTCCGCGACCACTACTCCTCCGCCTCTCCGTCCCTCCGGAAACTGTTCTACGGCGTCGTTTGCAGAGTCGCCACCGTGTTGAAGACCCGGTACACCTCGCTGGGTTTCTGGGCCGCCGGACTCGCCCTCTTTCAGCTCGCCCATTCCCTCGTCTCCGACCCCTCCGAGAAGGCCCACTTGCTCGCTTGCATCGATGAGGCACGACAGGTCGTTCATCAGGAAAACGATCCACCGCAGCCGTCGTCTTCTCCAAATCAAGGATATTTGTTTGAGGGGCATTTGACGGTGGATCGGGAGCCGCCGCAGCCGCAGTGGCTGGTGCAGTCGAATCTATTGACGGCGGCCATGGCGGCGGGGTCGTCTTCTGAGTCGGGTCCCGGAAACGAAGAGAACTCGGAAAGCGCGGTGAATCTGCTTCAGTCACTCATCGACAACCTCGACAGCGTTTTGCCGCCGGGGGTTTTGGATGACGTGAGGGCGGCTCCAAGGGTCCCGCCTGCGAGCAAACAGGTGGTGGCCAGTCTTCCGGTAGTCACGATCACGGAGGAAGTGTTGAAGAAGCTCGGAGAGGACGCGGACTGCTGCATTTGTAAGGAGAACTTGGTCGTCAATGACAAGATGCAGGAGTTGCCCTGCAAGCACACTTTCCACCCTCCTTGCCTAAAGCCATGGCTGGATGAGCACAATTCTTGTCCGATATGCCGGCATGAGCTGCAGACGGATGATCATGCGTACGAGAGTTGGAAGGAGAGGGAGAAGGAGGCCGAAGAAGACAGAAAAGGGGCTGCGAATGCGATTCGTGGTGGTGAATATATGTATGTTTAA

Protein Analysis

313

Amino Acids

34.77

Weight (kDa)

5.21

Isoelectric Point (pI)

53.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 231 - 273 1.2e-12 Ring finger domain
zf-RING_11 PF17123 231 - 259 4.7e-07 RING-like zinc finger
zf-C3HC4_2 PF13923 232 - 272 1.2e-06 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 120, 518, 689
AccIII TCCGGA 1 cut(s) 150
AclWI GGATC 2 cut(s) 335, 411
AcoI YGGCCR 2 cut(s) 456, 630
AcsI RAATTY 3 cut(s) 28, 80, 106
AcuI CTGAAG 1 cut(s) 515
AcyI GRCGYC 2 cut(s) 90, 168
AfaI GTAC 2 cut(s) 206, 848
AfiI CCNNNNNNNGG 1 cut(s) 371
AgsI TTSAA 4 cut(s) 10, 16, 196, 670
AjiI CACGTC 1 cut(s) 586
AloI GAACNNNNNNTCC 1 cut(s) 28
AluBI AGCT 4 cut(s) 52, 250, 676, 826
AluI AGCT 4 cut(s) 52, 250, 676, 826
Alw21I GWGCWC 2 cut(s) 54, 798
Alw26I GTCTC 1 cut(s) 271
AlwI GGATC 2 cut(s) 335, 411
AlwNI CAGNNNCTG 1 cut(s) 430
Aor13HI TCCGGA 1 cut(s) 150
AoxI GGCC 5 cut(s) 225, 285, 456, 630, 876
ApeKI GCWGC 7 cut(s) 37, 112, 349, 418, 696, 826, 899
ApoI RAATTY 3 cut(s) 28, 80, 106
ArsI GACNNNNNNTTYG 2 cut(s) 78, 110
Asp700I GAANNNNTTC 1 cut(s) 158
AspLEI GCGC 1 cut(s) 518
AspS9I GGNCC 4 cut(s) 225, 286, 488, 604
AsuC2I CCSGG 3 cut(s) 202, 492, 570
AsuHPI GGTGA 2 cut(s) 532, 932
AsuII TTCGAA 1 cut(s) 84
AvaII GGWCC 2 cut(s) 488, 604
BalI TGGCCA 1 cut(s) 632
BanII GRGCYC 1 cut(s) 54
BarI GAAGNNNNNNTAC 2 cut(s) 188, 220
BbsI GAAGAC 6 cut(s) 93, 203, 351, 468, 629, 891
Bbv12I GWGCWC 2 cut(s) 54, 798
BbvI GCAGC 7 cut(s) 49, 99, 361, 430, 683, 813, 886
BceAI ACGGC 4 cut(s) 77, 181, 337, 468
BclI TGATCA 1 cut(s) 838
BcnI CCSGG 3 cut(s) 202, 492, 570
BcoDI GTCTC 1 cut(s) 271
BfmI CTRYAG 1 cut(s) 827
BglI GCCNNNNNGGC 2 cut(s) 427, 464
Bme1390I CCNGG 3 cut(s) 202, 492, 570
Bme18I GGWCC 2 cut(s) 488, 604
BmgBI CACGTC 1 cut(s) 586
BmgT120I GGNCC 4 cut(s) 225, 286, 488, 604
BmiI GGNNCC 6 cut(s) 411, 489, 490, 597, 605, 606
BmrFI CCNGG 3 cut(s) 202, 492, 570
BmsI GCATC 2 cut(s) 312, 723
BpiI GAAGAC 6 cut(s) 93, 203, 351, 468, 629, 891
BplI GAGNNNNNCTC 2 cut(s) 580, 612
Bpu14I TTCGAA 1 cut(s) 84
BpuMI CCSGG 3 cut(s) 202, 492, 570
Bsa29I ATCGAT 1 cut(s) 306
BsaHI GRCGYC 2 cut(s) 90, 168
BsaJI CCNNGG 4 cut(s) 459, 569, 599, 782
BsaWI WCCGGW 2 cut(s) 150, 640
BsaXI ACNNNNNCTCC 7 cut(s) 26, 113, 116, 143, 146, 650, 680
Bsc4I CCNNNNNNNGG 1 cut(s) 371
Bse118I RCCGGY 1 cut(s) 816
Bse1I ACTGG 1 cut(s) 633
BseAI TCCGGA 1 cut(s) 150
BseCI ATCGAT 1 cut(s) 306
BseDI CCNNGG 4 cut(s) 459, 569, 599, 782
BseGI GGATG 3 cut(s) 586, 796, 841
BseLI CCNNNNNNNGG 1 cut(s) 371
BseMII CTCAG 1 cut(s) 471
BseNI ACTGG 1 cut(s) 633
BseRI GAGGAG 2 cut(s) 62, 121
BseXI GCAGC 7 cut(s) 49, 99, 361, 430, 683, 813, 886
BseYI CCCAGC 1 cut(s) 214
BsgI GTGCAG 1 cut(s) 455
Bsh1236I CGCG 3 cut(s) 120, 518, 689
BshFI GGCC 5 cut(s) 227, 287, 458, 632, 878
BshVI ATCGAT 1 cut(s) 306
BsiHKAI GWGCWC 2 cut(s) 54, 798
BsiSI CCGG 7 cut(s) 151, 202, 231, 492, 569, 641, 817
BsiWI CGTACG 1 cut(s) 846
BslFI GGGAC 3 cut(s) 130, 474, 590
BslI CCNNNNNNNGG 1 cut(s) 371
BsmAI GTCTC 1 cut(s) 271
BsmBI CGTCTC 1 cut(s) 271
BsmFI GGGAC 3 cut(s) 130, 474, 590
BsmI GAATGC 1 cut(s) 910
BsnI GGCC 5 cut(s) 227, 287, 458, 632, 878
Bsp119I TTCGAA 1 cut(s) 84
Bsp1286I GDGCHC 2 cut(s) 54, 798
Bsp13I TCCGGA 1 cut(s) 150
Bsp143I GATC 4 cut(s) 340, 403, 651, 838
Bsp19I CCATGG 2 cut(s) 459, 782
BspANI GGCC 5 cut(s) 227, 287, 458, 632, 878
BspCNI CTCAG 1 cut(s) 472
BspDI ATCGAT 1 cut(s) 306
BspEI TCCGGA 1 cut(s) 150
BspFNI CGCG 3 cut(s) 120, 518, 689
BspLI GGNNCC 6 cut(s) 411, 489, 490, 597, 605, 606
BspMAI CTGCAG 1 cut(s) 831
BspPI GGATC 2 cut(s) 335, 411
BspT104I TTCGAA 1 cut(s) 84
BsrFI RCCGGY 1 cut(s) 816
BsrI ACTGG 1 cut(s) 633
BssAI RCCGGY 1 cut(s) 816
BssECI CCNNGG 4 cut(s) 459, 569, 599, 782
BssMI GATC 4 cut(s) 340, 403, 651, 838
BssNI GRCGYC 2 cut(s) 90, 168
BssT1I CCWWGG 3 cut(s) 459, 599, 782
Bst4CI ACNGT 3 cut(s) 159, 190, 400
Bst6I CTCTTC 1 cut(s) 495
BstACI GRCGYC 2 cut(s) 90, 168
BstAPI GCANNNNNTGC 2 cut(s) 742, 826
BstBI TTCGAA 1 cut(s) 84
BstC8I GCNNGC 7 cut(s) 252, 297, 301, 612, 616, 752, 818
BstDEI CTNAG 1 cut(s) 480
BstDSI CCRYGG 2 cut(s) 459, 782
BstF5I GGATG 3 cut(s) 586, 796, 841
BstFNI CGCG 3 cut(s) 120, 518, 689
BstHHI GCGC 1 cut(s) 518
BstKTI GATC 4 cut(s) 343, 406, 654, 841
BstMAI GTCTC 1 cut(s) 271
BstMBI GATC 4 cut(s) 340, 403, 651, 838
BstSCI CCNGG 3 cut(s) 200, 490, 568
BstSFI CTRYAG 1 cut(s) 827
BstUI CGCG 3 cut(s) 120, 518, 689
BstV1I GCAGC 7 cut(s) 49, 99, 361, 430, 683, 813, 886
BstV2I GAAGAC 6 cut(s) 93, 203, 351, 468, 629, 891
Bsu15I ATCGAT 1 cut(s) 306
BsuRI GGCC 5 cut(s) 227, 287, 458, 632, 878
BsuTUI ATCGAT 1 cut(s) 306
BtgI CCRYGG 2 cut(s) 459, 782
BtrI CACGTC 1 cut(s) 586
BtsCI GGATG 3 cut(s) 586, 796, 841
BtsI GCAGTG 1 cut(s) 431
BtsIMutI CAGTG 1 cut(s) 431
Cac8I GCNNGC 7 cut(s) 252, 297, 301, 612, 616, 752, 818
CaiI CAGNNNCTG 1 cut(s) 430
CfoI GCGC 1 cut(s) 518
Cfr10I RCCGGY 1 cut(s) 816
Cfr13I GGNCC 4 cut(s) 225, 286, 488, 604
ClaI ATCGAT 1 cut(s) 306
CseI GACGC 3 cut(s) 98, 157, 695
Csp6I GTAC 2 cut(s) 205, 847
CspCI CAANNNNNGTGG 2 cut(s) 752, 787
CviAII CATG 4 cut(s) 460, 783, 821, 842
CviQI GTAC 2 cut(s) 205, 847
DdeI CTNAG 1 cut(s) 480
DpnI GATC 4 cut(s) 342, 405, 653, 840
DpnII GATC 4 cut(s) 340, 403, 651, 838
EaeI YGGCCR 2 cut(s) 456, 630
Eam1104I CTCTTC 1 cut(s) 495
EarI CTCTTC 1 cut(s) 495
EciI GGCGGA 1 cut(s) 124
Ecl136II GAGCTC 1 cut(s) 52
Eco130I CCWWGG 3 cut(s) 459, 599, 782
Eco24I GRGCYC 1 cut(s) 54
Eco47I GGWCC 2 cut(s) 488, 604
Eco53kI GAGCTC 1 cut(s) 52
Eco57I CTGAAG 1 cut(s) 515
EcoICRI GAGCTC 1 cut(s) 52
EcoO109I RGGNCCY 2 cut(s) 488, 604
EcoRI GAATTC 1 cut(s) 106
EcoT14I CCWWGG 3 cut(s) 459, 599, 782
EcoT38I GRGCYC 1 cut(s) 54
ErhI CCWWGG 3 cut(s) 459, 599, 782
Esp3I CGTCTC 1 cut(s) 271
FaeI CATG 4 cut(s) 463, 786, 824, 845
FaiI YATR 8 cut(s) 461, 784, 814, 822, 843, 927, 929, 933
FalI AAGNNNNNCTT 4 cut(s) 275, 307, 698, 730
FaqI GGGAC 3 cut(s) 130, 474, 590
FatI CATG 4 cut(s) 459, 782, 820, 841
FauI CCCGC 2 cut(s) 460, 615
FbaI TGATCA 1 cut(s) 838
FokI GGATG 3 cut(s) 593, 803, 848
FriOI GRGCYC 1 cut(s) 54
GlaI GCGC 1 cut(s) 517
GsaI CCCAGC 1 cut(s) 218
HaeIII GGCC 5 cut(s) 227, 287, 458, 632, 878
HapII CCGG 7 cut(s) 151, 202, 231, 492, 569, 641, 817
HgaI GACGC 3 cut(s) 98, 157, 695
HhaI GCGC 1 cut(s) 518
Hin1I GRCGYC 2 cut(s) 90, 168
Hin1II CATG 4 cut(s) 463, 786, 824, 845
Hin6I GCGC 1 cut(s) 516
HinP1I GCGC 1 cut(s) 516
HinfI GANTC 6 cut(s) 180, 234, 442, 482, 523, 910
HpaII CCGG 7 cut(s) 151, 202, 231, 492, 569, 641, 817
HphI GGTGA 2 cut(s) 532, 932
Hpy166II GTNNAC 1 cut(s) 207
Hpy188I TCNGA 6 cut(s) 271, 280, 481, 511, 680, 810
Hpy188III TCNNGA 4 cut(s) 151, 332, 407, 649
Hpy8I GTNNAC 1 cut(s) 207
Hpy99I CGWCG 3 cut(s) 98, 173, 358
HpyAV CCTTC 3 cut(s) 277, 853, 865
HpyCH4III ACNGT 3 cut(s) 159, 190, 400
HpyCH4IV ACGT 2 cut(s) 63, 585
HpyCH4V TGCA 7 cut(s) 177, 303, 436, 699, 736, 750, 829
HpyF3I CTNAG 1 cut(s) 480
HpySE526I ACGT 2 cut(s) 63, 585
Hsp92I GRCGYC 2 cut(s) 90, 168
Hsp92II CATG 4 cut(s) 463, 786, 824, 845
HspAI GCGC 1 cut(s) 516
KflI GGGWCCC 2 cut(s) 488, 604
Kpn2I TCCGGA 1 cut(s) 150
KroI GCCGGC 1 cut(s) 816
KroNI GCCGGC 1 cut(s) 818
Ksp22I TGATCA 1 cut(s) 838
Kzo9I GATC 4 cut(s) 340, 403, 651, 838
LmnI GCTCC 6 cut(s) 34, 49, 57, 120, 409, 601
Lsp1109I GCAGC 7 cut(s) 49, 99, 361, 430, 683, 813, 886
LweI GCATC 2 cut(s) 312, 723
MaeII ACGT 2 cut(s) 63, 585
MaeIII GTNAC 2 cut(s) 534, 646
MalI GATC 4 cut(s) 342, 405, 653, 840
MboI GATC 4 cut(s) 340, 403, 651, 838
MboII GAAGA 9 cut(s) 98, 208, 351, 468, 512, 629, 682, 893, 896
MhlI GDGCHC 2 cut(s) 54, 798
MlsI TGGCCA 1 cut(s) 632
MluCI AATT 4 cut(s) 28, 80, 106, 799
MluNI TGGCCA 1 cut(s) 632
MlyI GAGTC 3 cut(s) 189, 228, 491
MmeI TCCRAC 2 cut(s) 294, 836
Mox20I TGGCCA 1 cut(s) 632
MroI TCCGGA 1 cut(s) 150
MroNI GCCGGC 1 cut(s) 816
MroXI GAANNNNTTC 1 cut(s) 158
MscI TGGCCA 1 cut(s) 632
MseI TTAA 1 cut(s) 937
Msp20I TGGCCA 1 cut(s) 632
MspI CCGG 7 cut(s) 151, 202, 231, 492, 569, 641, 817
MspR9I CCNGG 3 cut(s) 202, 492, 570
Mva1269I GAATGC 1 cut(s) 910
MvnI CGCG 3 cut(s) 120, 518, 689
NaeI GCCGGC 1 cut(s) 818
NciI CCSGG 3 cut(s) 202, 492, 570
NcoI CCATGG 2 cut(s) 459, 782
NdeII GATC 4 cut(s) 340, 403, 651, 838
NgoMIV GCCGGC 1 cut(s) 816
NlaIII CATG 4 cut(s) 463, 786, 824, 845
NlaIV GGNNCC 6 cut(s) 411, 489, 490, 597, 605, 606
NmuCI GTSAC 2 cut(s) 534, 646
NspV TTCGAA 1 cut(s) 84
PcsI WCGNNNNNNNCGW 3 cut(s) 90, 303, 549
PctI GAATGC 1 cut(s) 910
PdiI GCCGGC 1 cut(s) 818
PdmI GAANNNNTTC 1 cut(s) 158
PfeI GAWTC 3 cut(s) 442, 523, 910
Pfl23II CGTACG 1 cut(s) 846
PflFI GACNNNGTC 1 cut(s) 92
PfoI TCCNGGA 1 cut(s) 490
PleI GAGTC 3 cut(s) 188, 228, 490
PpsI GAGTC 3 cut(s) 188, 228, 490
PpuMI RGGWCCY 2 cut(s) 488, 604
Psp124BI GAGCTC 1 cut(s) 54
Psp5II RGGWCCY 2 cut(s) 488, 604
PspFI CCCAGC 1 cut(s) 214
PspLI CGTACG 1 cut(s) 846
PspN4I GGNNCC 6 cut(s) 411, 489, 490, 597, 605, 606
PspPI GGNCC 4 cut(s) 225, 286, 488, 604
PspPPI RGGWCCY 2 cut(s) 488, 604
PstI CTGCAG 1 cut(s) 831
PstNI CAGNNNCTG 1 cut(s) 430
PsyI GACNNNGTC 1 cut(s) 92
RsaI GTAC 2 cut(s) 206, 848
RsaNI GTAC 2 cut(s) 205, 847
SacI GAGCTC 1 cut(s) 54
SaqAI TTAA 1 cut(s) 937
Sau3AI GATC 4 cut(s) 340, 403, 651, 838
Sau96I GGNCC 4 cut(s) 225, 286, 488, 604
SchI GAGTC 3 cut(s) 189, 228, 491
ScrFI CCNGG 3 cut(s) 202, 492, 570
SduI GDGCHC 2 cut(s) 54, 798
SfaNI GCATC 2 cut(s) 312, 723
SfcI CTRYAG 1 cut(s) 827
SfuI TTCGAA 1 cut(s) 84
SinI GGWCC 2 cut(s) 488, 604
Sse9I AATT 4 cut(s) 28, 80, 106, 799
SstI GAGCTC 1 cut(s) 54
StyD4I CCNGG 3 cut(s) 200, 490, 568
StyI CCWWGG 3 cut(s) 459, 599, 782
TaaI ACNGT 3 cut(s) 159, 190, 400
TaiI ACGT 2 cut(s) 66, 588
TaqI TCGA 6 cut(s) 68, 84, 306, 440, 543, 552
TasI AATT 4 cut(s) 28, 80, 106, 799
TauI GCSGC 9 cut(s) 101, 230, 415, 418, 424, 458, 467, 568, 596
TfiI GAWTC 3 cut(s) 442, 523, 910
Tru1I TTAA 1 cut(s) 937
Tru9I TTAA 1 cut(s) 937
TscAI CASTG 1 cut(s) 431
TseFI GTSAC 2 cut(s) 534, 646
TseI GCWGC 7 cut(s) 37, 112, 349, 418, 696, 826, 899
Tsp45I GTSAC 2 cut(s) 534, 646
TspDTI ATGAA 1 cut(s) 317
TspGWI ACGGA 3 cut(s) 132, 671, 848
TspRI CASTG 1 cut(s) 431
Tth111I GACNNNGTC 1 cut(s) 92
VpaK11BI GGWCC 2 cut(s) 488, 604
XapI RAATTY 3 cut(s) 28, 80, 106
XmnI GAANNNNTTC 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.