pycom15g05880

Clathrin interactor EPSIN

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Reverse (-)
3555959 .. 3559177
3219 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1275 bp
ATGGATTTCATGAAGGTCTTCGATCAGACGGTCCGAGAAATAAAGAGGGAGGTGAATCTGAAGGTTTTGAAGGTTCCAGAGATGGAACAGAAGGTATTGGATGCCACGGACAATGAACCCTGGGGTCCTCATGGCTCTGCTTTGGCAGAGATTGCACAGGCCACTAAAAAATTTTCGGAATGTCAGATGGTAATGAATGTCTTATGGACAAGACTGAGTGAGATGGGAAAAGACTGGCGCCATGTTTATAAGGCATTGGCTGTTATAGAATATTTGGTGTCACTTGGATCTGAACGTGCTGTTGACGACATTATAGAACATACTTTCCAAATCTCATCACTCTCAAGCTTTGAATATGTTGAGCCAAGTGGGAAAGATAATGGTATAAATGTGAGGAAGAAGGCGGAAACCATAGTGGCCCTTCTGAATAATAAAGATAAAATACAAGAAGTTAGAAACAAAGCTGCTGCAAATCGTGACAAGTACTTTGGACTTTCATCTACTGGGATAACATATAAGTCAGGTTCAGTGACTTCATCCTCGTATGGTAATAGCAGCTATCAGAGTAGCGACCGATATGGAGGTCTAGGTGGTACAGGAGCTGGTGATAGTTTCAGGGATAGCTACAAAGACAGACATGAAGAAGATAATACTGAGAAGTTCAGCTCTGGCAGATCACGCCGTGGAGTTACAAGTGAGAAGCGAGAGAGCTCTTCAAAGAAGGGCTCAACAAGAAGCAGGAAGGGTCAGGATGATATATCATCTACTGTGTCAAAGTCATCAAACAAATCAAATGAAGCTGATGCATACAATTCAATTCATTCTCAAAGCGCAAGTATTCCTGATGATGATGATGATGATTTTGATCCACGAGGGACTTCTACTACTAAGGCTGCTGTTGGAAGCTCAGACCAAGTGGATCTGTTTGGACAAAATTTGATGGATGACTTCATAGATGCTCCAGCATCTGTTCCTGAAGAAAAGCCTGGCGTGAACAGCAGTTCAACGGATGTTGATCTGTTTGCAGATGCAGATTTTGTGTCAGCACCACCCCAGGCAGCAACTGGAGTATTTGCAGACTCGACCTTCGTATCAGCACCACCCAAGGCAGCAACTGGAGTGAGTTCTCAGAATGGCGTTGATCTATTTGCTTCCCAACCAATCATTTCTCCACCGGCCACTTCAACAGTTGATCTTTTTGCCACTCCTCGATCCAGTTATCCAGCCAGAAACCAAGTCTACAAATGCTGCGCCAACAAACACCAACATTGTTGA

Protein Analysis

425

Amino Acids

46.12

Weight (kDa)

5.35

Isoelectric Point (pI)

40.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ENTH PF01417 27 - 147 5.3e-43 ENTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 249
AccB1I GGYRCC 1 cut(s) 237
AccI GTMKAC 1 cut(s) 1239
AciI CCGC 1 cut(s) 404
AclWI GGATC 4 cut(s) 295, 860, 927, 1206
AcoI YGGCCR 1 cut(s) 1176
AcsI RAATTY 2 cut(s) 170, 934
AcuI CTGAAG 2 cut(s) 80, 996
AcyI GRCGYC 1 cut(s) 238
AdeI CACNNNGTG 1 cut(s) 683
AfaI GTAC 2 cut(s) 485, 595
AgsI TTSAA 6 cut(s) 70, 353, 717, 816, 1005, 1185
AjnI CCWGG 3 cut(s) 119, 985, 1053
AloI GAACNNNNNNTCC 2 cut(s) 309, 341
AluBI AGCT 9 cut(s) 348, 464, 558, 602, 624, 666, 711, 800, 906
AluI AGCT 9 cut(s) 348, 464, 558, 602, 624, 666, 711, 800, 906
Alw21I GWGCWC 1 cut(s) 713
AlwI GGATC 4 cut(s) 295, 860, 927, 1206
AlwNI CAGNNNCTG 4 cut(s) 602, 968, 1064, 1115
AoxI GGCC 3 cut(s) 159, 417, 1176
ApeKI GCWGC 7 cut(s) 464, 467, 555, 893, 1058, 1109, 1248
ApoI RAATTY 2 cut(s) 170, 934
ArsI GACNNNNNNTTYG 4 cut(s) 470, 502, 1070, 1102
Asp700I GAANNNNTTC 1 cut(s) 17
AspLEI GCGC 3 cut(s) 240, 833, 1253
AspS9I GGNCC 3 cut(s) 31, 125, 418
AsuHPI GGTGA 2 cut(s) 64, 617
AvaII GGWCC 2 cut(s) 31, 125
BaeI ACNNNNGTAYC 2 cut(s) 1074, 1107
BanI GGYRCC 1 cut(s) 237
BanII GRGCYC 2 cut(s) 713, 728
BauI CACGAG 1 cut(s) 870
BbsI GAAGAC 1 cut(s) 10
Bbv12I GWGCWC 1 cut(s) 713
BbvI GCAGC 7 cut(s) 451, 454, 567, 880, 1070, 1121, 1235
BccI CCATC 4 cut(s) 76, 181, 217, 934
BceAI ACGGC 1 cut(s) 666
BciT130I CCWGG 3 cut(s) 121, 987, 1055
BfaI CTAG 1 cut(s) 587
BfoI RGCGCY 1 cut(s) 241
BisI GCNGC 7 cut(s) 465, 468, 556, 894, 1059, 1110, 1249
BlsI GCNGC 7 cut(s) 466, 469, 557, 895, 1060, 1111, 1250
BmcAI AGTACT 1 cut(s) 485
Bme1390I CCNGG 3 cut(s) 121, 987, 1055
Bme18I GGWCC 2 cut(s) 31, 125
BmgT120I GGNCC 3 cut(s) 31, 125, 418
BmiI GGNNCC 3 cut(s) 75, 126, 239
BmrFI CCNGG 3 cut(s) 121, 987, 1055
BmrI ACTGGG 1 cut(s) 513
BmsI GCATC 5 cut(s) 91, 793, 946, 974, 1018
BmuI ACTGGG 1 cut(s) 513
BpiI GAAGAC 1 cut(s) 10
BpmI CTGGAG 3 cut(s) 945, 1086, 1137
BpuEI CTTGAG 1 cut(s) 328
BsaBI GATNNNNATC 2 cut(s) 864, 1014
BsaHI GRCGYC 1 cut(s) 238
BsaJI CCNNGG 6 cut(s) 105, 119, 120, 682, 1053, 1104
Bse118I RCCGGY 1 cut(s) 1174
Bse1I ACTGG 5 cut(s) 239, 508, 1069, 1120, 1215
Bse8I GATNNNNATC 2 cut(s) 864, 1014
BseBI CCWGG 3 cut(s) 121, 987, 1055
BseDI CCNNGG 6 cut(s) 105, 119, 120, 682, 1053, 1104
BseGI GGATG 5 cut(s) 106, 536, 757, 949, 1015
BseJI GATNNNNATC 2 cut(s) 864, 1014
BseMII CTCAG 4 cut(s) 206, 645, 921, 1142
BseNI ACTGG 5 cut(s) 239, 508, 1069, 1120, 1215
BseRI GAGGAG 1 cut(s) 1197
BseXI GCAGC 7 cut(s) 451, 454, 567, 880, 1070, 1121, 1235
Bsh1285I CGRYCG 1 cut(s) 574
BshFI GGCC 3 cut(s) 161, 419, 1178
BshNI GGYRCC 1 cut(s) 237
BsiEI CGRYCG 1 cut(s) 574
BsiHKAI GWGCWC 1 cut(s) 713
BsiSI CCGG 1 cut(s) 1175
BslFI GGGAC 1 cut(s) 889
BsmFI GGGAC 1 cut(s) 889
BsnI GGCC 3 cut(s) 161, 419, 1178
Bsp1286I GDGCHC 2 cut(s) 713, 728
Bsp143I GATC 9 cut(s) 22, 287, 674, 865, 919, 1015, 1141, 1192, 1211
BspACI CCGC 1 cut(s) 404
BspANI GGCC 3 cut(s) 161, 419, 1178
BspCNI CTCAG 4 cut(s) 207, 646, 920, 1141
BspHI TCATGA 1 cut(s) 9
BspLI GGNNCC 3 cut(s) 75, 126, 239
BspPI GGATC 4 cut(s) 295, 860, 927, 1206
BspQI GCTCTTC 1 cut(s) 718
BspT107I GGYRCC 1 cut(s) 237
BsrFI RCCGGY 1 cut(s) 1174
BsrI ACTGG 5 cut(s) 239, 508, 1069, 1120, 1215
BssAI RCCGGY 1 cut(s) 1174
BssECI CCNNGG 6 cut(s) 105, 119, 120, 682, 1053, 1104
BssMI GATC 9 cut(s) 22, 287, 674, 865, 919, 1015, 1141, 1192, 1211
BssNI GRCGYC 1 cut(s) 238
BssSI CACGAG 1 cut(s) 870
BssT1I CCWWGG 1 cut(s) 1104
Bst2BI CACGAG 1 cut(s) 870
Bst2UI CCWGG 3 cut(s) 121, 987, 1055
Bst4CI ACNGT 3 cut(s) 31, 769, 1189
Bst6I CTCTTC 1 cut(s) 718
BstACI GRCGYC 1 cut(s) 238
BstAPI GCANNNNNTGC 1 cut(s) 152
BstDEI CTNAG 5 cut(s) 215, 654, 888, 907, 1128
BstDSI CCRYGG 2 cut(s) 105, 682
BstF5I GGATG 5 cut(s) 106, 536, 757, 949, 1015
BstH2I RGCGCY 1 cut(s) 241
BstHHI GCGC 3 cut(s) 240, 833, 1253
BstKTI GATC 9 cut(s) 25, 290, 677, 868, 922, 1018, 1144, 1195, 1214
BstMBI GATC 9 cut(s) 22, 287, 674, 865, 919, 1015, 1141, 1192, 1211
BstMCI CGRYCG 1 cut(s) 574
BstMWI GCNNNNNNNGC 3 cut(s) 152, 678, 996
BstNI CCWGG 3 cut(s) 121, 987, 1055
BstSCI CCNGG 3 cut(s) 119, 985, 1053
BstV1I GCAGC 7 cut(s) 451, 454, 567, 880, 1070, 1121, 1235
BstV2I GAAGAC 1 cut(s) 10
BstX2I RGATCY 2 cut(s) 287, 919
BstYI RGATCY 2 cut(s) 287, 919
BsuRI GGCC 3 cut(s) 161, 419, 1178
BtgI CCRYGG 2 cut(s) 105, 682
BtsCI GGATG 5 cut(s) 106, 536, 757, 949, 1015
BtsIMutI CAGTG 1 cut(s) 534
CaiI CAGNNNCTG 4 cut(s) 602, 968, 1064, 1115
CciI TCATGA 1 cut(s) 9
CfoI GCGC 3 cut(s) 240, 833, 1253
Cfr10I RCCGGY 1 cut(s) 1174
Cfr13I GGNCC 3 cut(s) 31, 125, 418
CpoI CGGWCCG 1 cut(s) 31
Csp6I GTAC 2 cut(s) 484, 594
CspI CGGWCCG 1 cut(s) 31
CviAII CATG 4 cut(s) 10, 131, 242, 638
CviQI GTAC 2 cut(s) 484, 594
DdeI CTNAG 5 cut(s) 215, 654, 888, 907, 1128
DinI GGCGCC 1 cut(s) 239
DpnI GATC 9 cut(s) 24, 289, 676, 867, 921, 1017, 1143, 1194, 1213
DpnII GATC 9 cut(s) 22, 287, 674, 865, 919, 1015, 1141, 1192, 1211
DraIII CACNNNGTG 1 cut(s) 683
EaeI YGGCCR 1 cut(s) 1176
Eam1104I CTCTTC 1 cut(s) 718
EarI CTCTTC 1 cut(s) 718
EciI GGCGGA 1 cut(s) 419
Ecl136II GAGCTC 1 cut(s) 711
Eco130I CCWWGG 1 cut(s) 1104
Eco24I GRGCYC 2 cut(s) 713, 728
Eco47I GGWCC 2 cut(s) 31, 125
Eco53kI GAGCTC 1 cut(s) 711
Eco57I CTGAAG 2 cut(s) 80, 996
EcoICRI GAGCTC 1 cut(s) 711
EcoO109I RGGNCCY 1 cut(s) 125
EcoRII CCWGG 3 cut(s) 119, 985, 1053
EcoT14I CCWWGG 1 cut(s) 1104
EcoT22I ATGCAT 1 cut(s) 808
EcoT38I GRGCYC 2 cut(s) 713, 728
EgeI GGCGCC 1 cut(s) 239
EheI GGCGCC 1 cut(s) 239
ErhI CCWWGG 1 cut(s) 1104
FaeI CATG 4 cut(s) 13, 134, 245, 641
FaqI GGGAC 1 cut(s) 889
FatI CATG 4 cut(s) 9, 130, 241, 637
FblI GTMKAC 1 cut(s) 1239
Fnu4HI GCNGC 7 cut(s) 465, 468, 556, 894, 1059, 1110, 1249
FokI GGATG 5 cut(s) 113, 523, 764, 956, 1022
FriOI GRGCYC 2 cut(s) 713, 728
Fsp4HI GCNGC 7 cut(s) 465, 468, 556, 894, 1059, 1110, 1249
FspBI CTAG 1 cut(s) 587
GlaI GCGC 3 cut(s) 239, 832, 1252
GluI GCNGC 7 cut(s) 465, 468, 556, 894, 1059, 1110, 1249
GsuI CTGGAG 3 cut(s) 945, 1086, 1137
HaeII RGCGCY 1 cut(s) 241
HaeIII GGCC 3 cut(s) 161, 419, 1178
HapII CCGG 1 cut(s) 1175
HhaI GCGC 3 cut(s) 240, 833, 1253
Hin1I GRCGYC 1 cut(s) 238
Hin1II CATG 4 cut(s) 13, 134, 245, 641
Hin6I GCGC 3 cut(s) 238, 831, 1251
HinP1I GCGC 3 cut(s) 238, 831, 1251
HincII GTYRAC 1 cut(s) 304
HindII GTYRAC 1 cut(s) 304
HindIII AAGCTT 1 cut(s) 346
HinfI GANTC 2 cut(s) 55, 1079
HpaII CCGG 1 cut(s) 1175
HphI GGTGA 2 cut(s) 64, 617
Hpy166II GTNNAC 3 cut(s) 304, 994, 1240
Hpy188III TCNNGA 6 cut(s) 10, 77, 476, 749, 842, 974
Hpy8I GTNNAC 3 cut(s) 304, 994, 1240
HpyAV CCTTC 9 cut(s) 7, 55, 64, 85, 394, 431, 715, 736, 1096
HpyCH4III ACNGT 3 cut(s) 31, 769, 1189
HpyCH4IV ACGT 1 cut(s) 295
HpyCH4V TGCA 6 cut(s) 155, 470, 806, 1025, 1031, 1076
HpyF10VI GCNNNNNNNGC 3 cut(s) 152, 678, 996
HpyF3I CTNAG 5 cut(s) 215, 654, 888, 907, 1128
HpySE526I ACGT 1 cut(s) 295
Hsp92I GRCGYC 1 cut(s) 238
Hsp92II CATG 4 cut(s) 13, 134, 245, 641
HspAI GCGC 3 cut(s) 238, 831, 1251
KasI GGCGCC 1 cut(s) 237
Kzo9I GATC 9 cut(s) 22, 287, 674, 865, 919, 1015, 1141, 1192, 1211
LguI GCTCTTC 1 cut(s) 718
LmnI GCTCC 2 cut(s) 599, 964
Lsp1109I GCAGC 7 cut(s) 451, 454, 567, 880, 1070, 1121, 1235
LweI GCATC 5 cut(s) 91, 793, 946, 974, 1018
MaeI CTAG 1 cut(s) 587
MaeII ACGT 1 cut(s) 295
MaeIII GTNAC 4 cut(s) 279, 476, 529, 688
MalI GATC 9 cut(s) 24, 289, 676, 867, 921, 1017, 1143, 1194, 1213
MboI GATC 9 cut(s) 22, 287, 674, 865, 919, 1015, 1141, 1192, 1211
MboII GAAGA 6 cut(s) 10, 409, 653, 656, 705, 989
MflI RGATCY 2 cut(s) 287, 919
MhlI GDGCHC 2 cut(s) 713, 728
MluCI AATT 4 cut(s) 170, 811, 816, 934
Mly113I GGCGCC 1 cut(s) 238
MlyI GAGTC 1 cut(s) 1073
MmeI TCCRAC 1 cut(s) 880
MnlI CCTC 8 cut(s) 39, 43, 138, 387, 550, 575, 866, 1218
Mph1103I ATGCAT 1 cut(s) 808
MroXI GAANNNNTTC 1 cut(s) 17
MspI CCGG 1 cut(s) 1175
MspR9I CCNGG 3 cut(s) 121, 987, 1055
MvaI CCWGG 3 cut(s) 121, 987, 1055
MwoI GCNNNNNNNGC 3 cut(s) 152, 678, 996
NarI GGCGCC 1 cut(s) 238
NdeII GATC 9 cut(s) 22, 287, 674, 865, 919, 1015, 1141, 1192, 1211
NlaIII CATG 4 cut(s) 13, 134, 245, 641
NlaIV GGNNCC 3 cut(s) 75, 126, 239
NmuCI GTSAC 3 cut(s) 279, 476, 529
NsiI ATGCAT 1 cut(s) 808
PagI TCATGA 1 cut(s) 9
PasI CCCWGGG 1 cut(s) 120
PciSI GCTCTTC 1 cut(s) 718
PdmI GAANNNNTTC 1 cut(s) 17
PfeI GAWTC 1 cut(s) 55
PkrI GCNGC 7 cut(s) 466, 469, 557, 895, 1060, 1111, 1250
PleI GAGTC 1 cut(s) 1073
PluTI GGCGCC 1 cut(s) 241
PpsI GAGTC 1 cut(s) 1073
PpuMI RGGWCCY 1 cut(s) 125
PsiI TTATAA 1 cut(s) 249
Psp124BI GAGCTC 1 cut(s) 713
Psp5II RGGWCCY 1 cut(s) 125
Psp6I CCWGG 3 cut(s) 119, 985, 1053
PspGI CCWGG 3 cut(s) 119, 985, 1053
PspN4I GGNNCC 3 cut(s) 75, 126, 239
PspPI GGNCC 3 cut(s) 31, 125, 418
PspPPI RGGWCCY 1 cut(s) 125
PstNI CAGNNNCTG 4 cut(s) 602, 968, 1064, 1115
PsuI RGATCY 2 cut(s) 287, 919
RsaI GTAC 2 cut(s) 485, 595
RsaNI GTAC 2 cut(s) 484, 594
Rsr2I CGGWCCG 1 cut(s) 31
RsrII CGGWCCG 1 cut(s) 31
SacI GAGCTC 1 cut(s) 713
SapI GCTCTTC 1 cut(s) 718
SatI GCNGC 7 cut(s) 465, 468, 556, 894, 1059, 1110, 1249
Sau3AI GATC 9 cut(s) 22, 287, 674, 865, 919, 1015, 1141, 1192, 1211
Sau96I GGNCC 3 cut(s) 31, 125, 418
ScaI AGTACT 1 cut(s) 485
SchI GAGTC 1 cut(s) 1073
ScrFI CCNGG 3 cut(s) 121, 987, 1055
SduI GDGCHC 2 cut(s) 713, 728
SfaNI GCATC 5 cut(s) 91, 793, 946, 974, 1018
SfoI GGCGCC 1 cut(s) 239
SinI GGWCC 2 cut(s) 31, 125
SmlI CTYRAG 1 cut(s) 343
SmoI CTYRAG 1 cut(s) 343
Sse9I AATT 4 cut(s) 170, 811, 816, 934
SsiI CCGC 1 cut(s) 404
SspDI GGCGCC 1 cut(s) 237
SspI AATATT 1 cut(s) 272
SspMI CTAG 1 cut(s) 587
SstI GAGCTC 1 cut(s) 713
StyD4I CCNGG 3 cut(s) 119, 985, 1053
StyI CCWWGG 1 cut(s) 1104
TaaI ACNGT 3 cut(s) 31, 769, 1189
TaiI ACGT 1 cut(s) 298
TaqI TCGA 3 cut(s) 21, 1082, 1210
TaqII GACCGA 1 cut(s) 588
TasI AATT 4 cut(s) 170, 811, 816, 934
TatI WGTACW 1 cut(s) 483
TfiI GAWTC 1 cut(s) 55
TscAI CASTG 1 cut(s) 534
TseFI GTSAC 3 cut(s) 279, 476, 529
TseI GCWGC 7 cut(s) 464, 467, 555, 893, 1058, 1109, 1248
Tsp45I GTSAC 3 cut(s) 279, 476, 529
TspDTI ATGAA 9 cut(s) 26, 129, 209, 486, 525, 654, 809, 810, 940
TspGWI ACGGA 2 cut(s) 122, 1022
TspRI CASTG 1 cut(s) 534
VpaK11BI GGWCC 2 cut(s) 31, 125
XapI RAATTY 2 cut(s) 170, 934
XcmI CCANNNNNNNNNTGG 1 cut(s) 1061
XmiI GTMKAC 1 cut(s) 1239
XmnI GAANNNNTTC 1 cut(s) 17
XspI CTAG 1 cut(s) 587
ZrmI AGTACT 1 cut(s) 485
Zsp2I ATGCAT 1 cut(s) 808
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.