pycom15g07410

RING-H2 zinc finger domain

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
4538761 .. 4540266
1506 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1506 bp
ATGCAAGGGCAGAGGGGCACTATCGGTTCCTTGCCTGAAATGCTAGATTTTGACCATGGAAGTGCATCAAACGATGCTGCTCTAGATCAGCAAATTTGCTGGAATAGCACACGGAATCCTGCCGAAAGGATTCCAGACTATGTACAATCACCTGGTGATATGAATGTTGTGAATTCTATGGGACAGGAGCGACAACACTTGAGTAGATGGTGCCTGGGTGAACCTAGTTCTAGCAACTCACAGAGTGAGGTTAGTCGTGATGAGCGGAAACCAGAACTTGGATGGTCTTCTTCAGTGGATCCTTGTGTAGAAGCTGCTTCAAGGTTAGAGGAGCGACGCTATGAACCAACTAATAACCTTTCACTGGGCAACAATGTGAATACTATTTTTACACAAAGTTCAAGTTCTGATGCAATTCCACAGAATCTGAACTTGAATGCAGCTTTTGCGGGTCATGGTGGTGATAATAGTCAAGTAATGGAATGTCCTAACACATTCAAGTATAATGTTTCTGAAAATGAGCAAATTCGACCTCCTAGTGGTTCTAATCCCTTTATGCTACCTTCTGGAACTGCTGGATTTTTAATGGGAGAGAATGATGGCAGATCGGGCAGTTCATTGGAGGGTCGTCGTGTATCTTGTAAAAGAAAGGCTATGGAGGGAAATATAGGACAGTCTTCTCTAAGTGGAAGTTGCAGTTACTTTCAGCATACAGACAGTGGTGGAAGGACTTCTGTTCCCGCTCACTATAATGCAGGTGGCAGCCTAAGCATATCTACCCCATCAGAACAGGGGAATTCAAGACTTGGAGTAGTTGGGAGAGCACTTGCTTCTGACAGCCTTCCTGATTCAAATGCTGGAAGAAGCTCAGAAGGCACTCATAGGAACTTCCGTGTGAGAATAAATCCTTCAAATCAGCAAAATTCTATACCCTCTAATAGGTTTCCATCGGGGAGGGCTGCTAGGCATTCTAGTATTTCCTCTTCGCATCATTCACCAAGTCTTCTTCCAGTTGATCATAATATGGACTTGAGACCAGCACCAGCGCTAGATAATACGAGTTCACAGAACCCACCAGTTGTCATCCATGTTCCTGCTTTGCCGCAAAATGTGCAATCATTGAGATGGAGTGGAGGGTCGAGCTCAAGAACTGGCAGCTTATCAAATTCTGTGGTTTTTGGAGACAGAGATGCTCCACAGCCTCCACCACTTGAGGAAGGGAGCTCAAGAAGCATGGCGAGACACATTTTGGATCATCCTATTTTTGTACCAGCATCTGAATTGAGAAATTCGGCTCGGCATCCTGCAGGTGCATCTAATAGAAATTTACCTGGTGGAAATGCAAGTATTCCTGGAAATGTTGCTTCAGCATCCCGGACGGGCACAAGTTCAGGTGTTAATCCAGCAGCTGCACCTACGTGGGTTCCTCCTCACAATTCTCATCCCCAATTTCCTCGAAGATTATCTGAATATGTTCGATCGATCATTATTTTCTGCTTCTGGTAG

Protein Analysis

502

Amino Acids

53.63

Weight (kDa)

6.98

Isoelectric Point (pI)

67.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 746, 1298
Acc36I ACCTGC 2 cut(s) 746, 1298
AccB1I GGYRCC 1 cut(s) 210
AccB7I CCANNNNNTGG 1 cut(s) 278
AccBSI CCGCTC 2 cut(s) 265, 743
AciI CCGC 4 cut(s) 265, 449, 741, 1103
AclWI GGATC 3 cut(s) 293, 306, 1260
AcsI RAATTY 8 cut(s) 93, 172, 525, 796, 922, 1165, 1288, 1324
AcuI CTGAAG 2 cut(s) 276, 1350
AdeI CACNNNGTG 2 cut(s) 155, 245
AfaI GTAC 2 cut(s) 144, 1269
AfeI AGCGCT 1 cut(s) 1047
AfiI CCNNNNNNNGG 4 cut(s) 278, 364, 539, 939
AgsI TTSAA 7 cut(s) 321, 402, 436, 499, 801, 852, 912
AjnI CCWGG 4 cut(s) 151, 213, 1330, 1351
AleI CACNNNNGTG 1 cut(s) 1417
AluBI AGCT 7 cut(s) 314, 443, 867, 1143, 1158, 1224, 1409
AluI AGCT 7 cut(s) 314, 443, 867, 1143, 1158, 1224, 1409
Alw21I GWGCWC 3 cut(s) 826, 1145, 1226
Alw26I GTCTC 3 cut(s) 1027, 1176, 1234
AlwI GGATC 3 cut(s) 293, 306, 1260
AlwNI CAGNNNCTG 3 cut(s) 427, 1277, 1409
Aor51HI AGCGCT 1 cut(s) 1047
ApeKI GCWGC 8 cut(s) 77, 314, 440, 762, 959, 1155, 1406, 1409
ApoI RAATTY 8 cut(s) 93, 172, 525, 796, 922, 1165, 1288, 1324
Asp700I GAANNNNTTC 3 cut(s) 129, 730, 1473
AspLEI GCGC 1 cut(s) 1048
AsuC2I CCSGG 1 cut(s) 1375
AsuHPI GGTGA 5 cut(s) 141, 167, 230, 473, 987
BaeGI GKGCMC 2 cut(s) 20, 1385
BamHI GGATCC 1 cut(s) 298
BanI GGYRCC 1 cut(s) 210
BanII GRGCYC 2 cut(s) 1145, 1226
BarI GAAGNNNNNNTAC 2 cut(s) 967, 999
BbsI GAAGAC 3 cut(s) 279, 669, 995
Bbv12I GWGCWC 3 cut(s) 826, 1145, 1226
BbvI GCAGC 8 cut(s) 64, 301, 452, 774, 946, 1167, 1396, 1418
BccI CCATC 6 cut(s) 201, 276, 593, 790, 955, 1119
BciT130I CCWGG 4 cut(s) 153, 215, 1332, 1353
BclI TGATCA 1 cut(s) 1015
BcnI CCSGG 1 cut(s) 1375
BcoDI GTCTC 3 cut(s) 1027, 1176, 1234
BfaI CTAG 8 cut(s) 44, 83, 225, 231, 537, 963, 972, 1049
BfmI CTRYAG 1 cut(s) 1305
BfoI RGCGCY 1 cut(s) 1049
BfuAI ACCTGC 2 cut(s) 746, 1298
BisI GCNGC 9 cut(s) 78, 315, 441, 763, 960, 1103, 1156, 1407, 1410
BlsI GCNGC 9 cut(s) 79, 316, 442, 764, 961, 1104, 1157, 1408, 1411
Bme1390I CCNGG 5 cut(s) 153, 215, 1332, 1353, 1375
BmiI GGNNCC 4 cut(s) 28, 212, 300, 1425
BmrFI CCNGG 5 cut(s) 153, 215, 1332, 1353, 1375
BmrI ACTGGG 1 cut(s) 374
BmsI GCATC 9 cut(s) 64, 74, 400, 997, 1180, 1283, 1309, 1322, 1379
BmuI ACTGGG 1 cut(s) 374
BpiI GAAGAC 3 cut(s) 279, 669, 995
Bpu10I CCTNAGC 1 cut(s) 767
BpuEI CTTGAG 5 cut(s) 220, 1051, 1129, 1210, 1232
BpuMI CCSGG 1 cut(s) 1375
Bsa29I ATCGAT 1 cut(s) 1481
BsaAI YACGTR 1 cut(s) 1419
BsaI GGTCTC 1 cut(s) 1027
BsaJI CCNNGG 2 cut(s) 55, 214
Bsc4I CCNNNNNNNGG 4 cut(s) 278, 364, 539, 939
Bse1I ACTGG 4 cut(s) 369, 1010, 1076, 1156
BseBI CCWGG 4 cut(s) 153, 215, 1332, 1353
BseCI ATCGAT 1 cut(s) 1481
BseDI CCNNGG 2 cut(s) 55, 214
BseGI GGATG 6 cut(s) 287, 1083, 1255, 1300, 1370, 1441
BseLI CCNNNNNNNGG 4 cut(s) 278, 364, 539, 939
BseMII CTCAG 1 cut(s) 882
BseNI ACTGG 4 cut(s) 369, 1010, 1076, 1156
BseRI GAGGAG 2 cut(s) 344, 1419
BseSI GKGCMC 2 cut(s) 20, 1385
BseXI GCAGC 8 cut(s) 64, 301, 452, 774, 946, 1167, 1396, 1418
BsgI GTGCAG 1 cut(s) 1395
Bsh1285I CGRYCG 1 cut(s) 1481
BshNI GGYRCC 1 cut(s) 210
BshVI ATCGAT 1 cut(s) 1481
BsiEI CGRYCG 1 cut(s) 1481
BsiHKAI GWGCWC 3 cut(s) 826, 1145, 1226
BsiSI CCGG 1 cut(s) 1375
BslFI GGGAC 1 cut(s) 195
BslI CCNNNNNNNGG 4 cut(s) 278, 364, 539, 939
BsmAI GTCTC 3 cut(s) 1027, 1176, 1234
BsmFI GGGAC 1 cut(s) 195
BsmI GAATGC 2 cut(s) 442, 967
Bso31I GGTCTC 1 cut(s) 1027
Bsp1286I GDGCHC 5 cut(s) 20, 826, 1145, 1226, 1385
Bsp1407I TGTACA 1 cut(s) 142
Bsp143I GATC 7 cut(s) 85, 298, 605, 1015, 1252, 1478, 1482
Bsp19I CCATGG 1 cut(s) 55
BspACI CCGC 4 cut(s) 265, 449, 741, 1103
BspCNI CTCAG 1 cut(s) 881
BspDI ATCGAT 1 cut(s) 1481
BspLI GGNNCC 4 cut(s) 28, 212, 300, 1425
BspMAI CTGCAG 1 cut(s) 1309
BspMI ACCTGC 2 cut(s) 746, 1298
BspPI GGATC 3 cut(s) 293, 306, 1260
BspT107I GGYRCC 1 cut(s) 210
BspTNI GGTCTC 1 cut(s) 1027
BsrBI CCGCTC 2 cut(s) 265, 743
BsrGI TGTACA 1 cut(s) 142
BsrI ACTGG 4 cut(s) 369, 1010, 1076, 1156
BssECI CCNNGG 2 cut(s) 55, 214
BssMI GATC 7 cut(s) 85, 298, 605, 1015, 1252, 1478, 1482
BssT1I CCWWGG 1 cut(s) 55
Bst2UI CCWGG 4 cut(s) 153, 215, 1332, 1353
Bst4CI ACNGT 2 cut(s) 675, 719
Bst6I CTCTTC 1 cut(s) 988
BstAPI GCANNNNNTGC 2 cut(s) 446, 1111
BstAUI TGTACA 1 cut(s) 142
BstBAI YACGTR 1 cut(s) 1419
BstDEI CTNAG 3 cut(s) 683, 767, 868
BstDSI CCRYGG 1 cut(s) 55
BstENI CCTNNNNNAGG 1 cut(s) 937
BstF5I GGATG 6 cut(s) 287, 1083, 1255, 1300, 1370, 1441
BstH2I RGCGCY 1 cut(s) 1049
BstHHI GCGC 1 cut(s) 1048
BstKTI GATC 7 cut(s) 88, 301, 608, 1018, 1255, 1481, 1485
BstMAI GTCTC 3 cut(s) 1027, 1176, 1234
BstMBI GATC 7 cut(s) 85, 298, 605, 1015, 1252, 1478, 1482
BstMCI CGRYCG 1 cut(s) 1481
BstMWI GCNNNNNNNGC 8 cut(s) 40, 105, 446, 609, 768, 873, 1111, 1230
BstNI CCWGG 4 cut(s) 153, 215, 1332, 1353
BstSCI CCNGG 5 cut(s) 151, 213, 1330, 1351, 1373
BstSFI CTRYAG 1 cut(s) 1305
BstSLI GKGCMC 2 cut(s) 20, 1385
BstV1I GCAGC 8 cut(s) 64, 301, 452, 774, 946, 1167, 1396, 1418
BstV2I GAAGAC 3 cut(s) 279, 669, 995
BstX2I RGATCY 1 cut(s) 298
BstYI RGATCY 1 cut(s) 298
Bsu15I ATCGAT 1 cut(s) 1481
BsuTUI ATCGAT 1 cut(s) 1481
BtgI CCRYGG 1 cut(s) 55
BtsCI GGATG 6 cut(s) 287, 1083, 1255, 1300, 1370, 1441
BtsIMutI CAGTG 3 cut(s) 300, 362, 724
BveI ACCTGC 2 cut(s) 746, 1298
CaiI CAGNNNCTG 3 cut(s) 427, 1277, 1409
CfoI GCGC 1 cut(s) 1048
ClaI ATCGAT 1 cut(s) 1481
CseI GACGC 1 cut(s) 345
CsiI ACCWGGT 2 cut(s) 151, 1330
Csp6I GTAC 2 cut(s) 143, 1268
CspCI CAANNNNNGTGG 2 cut(s) 1152, 1187
CviAII CATG 4 cut(s) 56, 455, 1088, 1234
CviQI GTAC 2 cut(s) 143, 1268
DdeI CTNAG 3 cut(s) 683, 767, 868
DpnI GATC 7 cut(s) 87, 300, 607, 1017, 1254, 1480, 1484
DpnII GATC 7 cut(s) 85, 298, 605, 1015, 1252, 1478, 1482
DraIII CACNNNGTG 2 cut(s) 155, 245
Eam1104I CTCTTC 1 cut(s) 988
EarI CTCTTC 1 cut(s) 988
Ecl136II GAGCTC 2 cut(s) 1143, 1224
Eco130I CCWWGG 1 cut(s) 55
Eco24I GRGCYC 2 cut(s) 1145, 1226
Eco31I GGTCTC 1 cut(s) 1027
Eco47III AGCGCT 1 cut(s) 1047
Eco53kI GAGCTC 2 cut(s) 1143, 1224
Eco57I CTGAAG 2 cut(s) 276, 1350
EcoICRI GAGCTC 2 cut(s) 1143, 1224
EcoNI CCTNNNNNAGG 1 cut(s) 937
EcoRI GAATTC 2 cut(s) 172, 796
EcoRII CCWGG 4 cut(s) 151, 213, 1330, 1351
EcoT14I CCWWGG 1 cut(s) 55
EcoT38I GRGCYC 2 cut(s) 1145, 1226
ErhI CCWWGG 1 cut(s) 55
FaeI CATG 4 cut(s) 59, 458, 1091, 1237
FaqI GGGAC 1 cut(s) 195
FatI CATG 4 cut(s) 55, 454, 1087, 1233
FauI CCCGC 2 cut(s) 442, 748
FbaI TGATCA 1 cut(s) 1015
Fnu4HI GCNGC 9 cut(s) 78, 315, 441, 763, 960, 1103, 1156, 1407, 1410
FokI GGATG 6 cut(s) 294, 1070, 1242, 1287, 1357, 1428
FriOI GRGCYC 2 cut(s) 1145, 1226
Fsp4HI GCNGC 9 cut(s) 78, 315, 441, 763, 960, 1103, 1156, 1407, 1410
FspBI CTAG 8 cut(s) 44, 83, 225, 231, 537, 963, 972, 1049
GlaI GCGC 1 cut(s) 1047
GluI GCNGC 9 cut(s) 78, 315, 441, 763, 960, 1103, 1156, 1407, 1410
HaeII RGCGCY 1 cut(s) 1049
HapII CCGG 1 cut(s) 1375
HgaI GACGC 1 cut(s) 345
HhaI GCGC 1 cut(s) 1048
Hin1II CATG 4 cut(s) 59, 458, 1091, 1237
Hin6I GCGC 1 cut(s) 1046
HinP1I GCGC 1 cut(s) 1046
HinfI GANTC 4 cut(s) 115, 130, 424, 848
HpaII CCGG 1 cut(s) 1375
HphI GGTGA 5 cut(s) 141, 167, 230, 473, 987
Hpy166II GTNNAC 2 cut(s) 221, 1064
Hpy188I TCNGA 8 cut(s) 409, 429, 514, 787, 835, 871, 1279, 1468
Hpy188III TCNNGA 8 cut(s) 83, 134, 257, 567, 801, 845, 1146, 1227
Hpy8I GTNNAC 2 cut(s) 221, 1064
Hpy99I CGWCG 2 cut(s) 339, 633
HpyAV CCTTC 6 cut(s) 573, 720, 851, 866, 918, 1211
HpyCH4III ACNGT 2 cut(s) 675, 719
HpyCH4IV ACGT 1 cut(s) 1418
HpyF10VI GCNNNNNNNGC 8 cut(s) 40, 105, 446, 609, 768, 873, 1111, 1230
HpyF3I CTNAG 3 cut(s) 683, 767, 868
HpySE526I ACGT 1 cut(s) 1418
Hsp92II CATG 4 cut(s) 59, 458, 1091, 1237
HspAI GCGC 1 cut(s) 1046
Ksp22I TGATCA 1 cut(s) 1015
Kzo9I GATC 7 cut(s) 85, 298, 605, 1015, 1252, 1478, 1482
LmnI GCTCC 4 cut(s) 187, 331, 1198, 1221
Lsp1109I GCAGC 8 cut(s) 64, 301, 452, 774, 946, 1167, 1396, 1418
LweI GCATC 9 cut(s) 64, 74, 400, 997, 1180, 1283, 1309, 1322, 1379
MabI ACCWGGT 2 cut(s) 151, 1330
MaeI CTAG 8 cut(s) 44, 83, 225, 231, 537, 963, 972, 1049
MaeII ACGT 1 cut(s) 1418
MaeIII GTNAC 1 cut(s) 698
MalI GATC 7 cut(s) 87, 300, 607, 1017, 1254, 1480, 1484
MbiI CCGCTC 2 cut(s) 265, 743
MboI GATC 7 cut(s) 85, 298, 605, 1015, 1252, 1478, 1482
MboII GAAGA 8 cut(s) 279, 282, 669, 873, 975, 995, 998, 1470
MflI RGATCY 1 cut(s) 298
MhlI GDGCHC 5 cut(s) 20, 826, 1145, 1226, 1385
MroXI GAANNNNTTC 3 cut(s) 129, 730, 1473
MseI TTAA 2 cut(s) 584, 1398
MslI CAYNNNNRTG 5 cut(s) 60, 459, 750, 1123, 1417
MspA1I CMGCKG 1 cut(s) 1409
MspI CCGG 1 cut(s) 1375
MspR9I CCNGG 5 cut(s) 153, 215, 1332, 1353, 1375
Mva1269I GAATGC 2 cut(s) 442, 967
MvaI CCWGG 4 cut(s) 153, 215, 1332, 1353
MwoI GCNNNNNNNGC 8 cut(s) 40, 105, 446, 609, 768, 873, 1111, 1230
NciI CCSGG 1 cut(s) 1375
NcoI CCATGG 1 cut(s) 55
NdeII GATC 7 cut(s) 85, 298, 605, 1015, 1252, 1478, 1482
NlaIII CATG 4 cut(s) 59, 458, 1091, 1237
NlaIV GGNNCC 4 cut(s) 28, 212, 300, 1425
NmeAIII GCCGAG 1 cut(s) 1276
OliI CACNNNNGTG 1 cut(s) 1417
PaqCI CACCTGC 2 cut(s) 746, 1298
PctI GAATGC 2 cut(s) 442, 967
PdmI GAANNNNTTC 3 cut(s) 129, 730, 1473
PfeI GAWTC 4 cut(s) 115, 130, 424, 848
PflMI CCANNNNNTGG 1 cut(s) 278
PfoI TCCNGGA 2 cut(s) 1351, 1373
PkrI GCNGC 9 cut(s) 79, 316, 442, 764, 961, 1104, 1157, 1408, 1411
Ple19I CGATCG 1 cut(s) 1481
Ppu21I YACGTR 1 cut(s) 1419
Psp124BI GAGCTC 2 cut(s) 1145, 1226
Psp6I CCWGG 4 cut(s) 151, 213, 1330, 1351
PspGI CCWGG 4 cut(s) 151, 213, 1330, 1351
PspN4I GGNNCC 4 cut(s) 28, 212, 300, 1425
PstI CTGCAG 1 cut(s) 1309
PstNI CAGNNNCTG 3 cut(s) 427, 1277, 1409
PsuI RGATCY 1 cut(s) 298
PvuI CGATCG 1 cut(s) 1481
PvuII CAGCTG 1 cut(s) 1409
RsaI GTAC 2 cut(s) 144, 1269
RsaNI GTAC 2 cut(s) 143, 1268
RseI CAYNNNNRTG 5 cut(s) 60, 459, 750, 1123, 1417
SacI GAGCTC 2 cut(s) 1145, 1226
SaqAI TTAA 2 cut(s) 584, 1398
SatI GCNGC 9 cut(s) 78, 315, 441, 763, 960, 1103, 1156, 1407, 1410
Sau3AI GATC 7 cut(s) 85, 298, 605, 1015, 1252, 1478, 1482
SbfI CCTGCAGG 1 cut(s) 1309
ScrFI CCNGG 5 cut(s) 153, 215, 1332, 1353, 1375
SdaI CCTGCAGG 1 cut(s) 1309
SduI GDGCHC 5 cut(s) 20, 826, 1145, 1226, 1385
SexAI ACCWGGT 2 cut(s) 151, 1330
SfaNI GCATC 9 cut(s) 64, 74, 400, 997, 1180, 1283, 1309, 1322, 1379
SfcI CTRYAG 1 cut(s) 1305
SmiMI CAYNNNNRTG 5 cut(s) 60, 459, 750, 1123, 1417
SmlI CTYRAG 5 cut(s) 199, 1030, 1144, 1211, 1225
SmoI CTYRAG 5 cut(s) 199, 1030, 1144, 1211, 1225
Sse8387I CCTGCAGG 1 cut(s) 1309
SsiI CCGC 4 cut(s) 265, 449, 741, 1103
SspMI CTAG 8 cut(s) 44, 83, 225, 231, 537, 963, 972, 1049
SstI GAGCTC 2 cut(s) 1145, 1226
StyD4I CCNGG 5 cut(s) 151, 213, 1330, 1351, 1373
StyI CCWWGG 1 cut(s) 55
TaaI ACNGT 2 cut(s) 675, 719
TaiI ACGT 1 cut(s) 1421
TaqI TCGA 5 cut(s) 529, 1139, 1456, 1477, 1481
TatI WGTACW 1 cut(s) 142
TauI GCSGC 1 cut(s) 1105
TfiI GAWTC 4 cut(s) 115, 130, 424, 848
Tru1I TTAA 2 cut(s) 584, 1398
Tru9I TTAA 2 cut(s) 584, 1398
TscAI CASTG 3 cut(s) 300, 369, 724
TseI GCWGC 8 cut(s) 77, 314, 440, 762, 959, 1155, 1406, 1409
TspDTI ATGAA 3 cut(s) 176, 357, 606
TspGWI ACGGA 2 cut(s) 127, 881
TspRI CASTG 3 cut(s) 300, 369, 724
Van91I CCANNNNNTGG 1 cut(s) 278
XagI CCTNNNNNAGG 1 cut(s) 937
XapI RAATTY 8 cut(s) 93, 172, 525, 796, 922, 1165, 1288, 1324
XbaI TCTAGA 1 cut(s) 82
XcmI CCANNNNNNNNNTGG 1 cut(s) 279
XmnI GAANNNNTTC 3 cut(s) 129, 730, 1473
XspI CTAG 8 cut(s) 44, 83, 225, 231, 537, 963, 972, 1049
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.