Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0006157

Physical Location & Seq

Genomic Coordinates Forward (+)

4540397 .. 4541786

Gene Structure 1390 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGAGAGACATGGTGATGGTGGACTTGGGCTTCCGTATTCATTACGGACTTTGGCTGCTGCAGGTGGTGAAGGAAGTAGCAGGCTCGTATCTGAGCAGATTTGCAATGTACTGGGTCTCATGCGTAGGGGCGAGAACTTGCGATTCGAGGATGTTATGATTCTTGATCGATCGGTCCTTTTTGGGGTGGCTGATATTCACGACCGACATAGAGACATGCGACTTGATGTTGATAACATGTCTTATGAGGAATTATTGGCTCTGGAAGAGCGTATTGGAAACGTGAACACTGGATTAAGTGAAGAAACCATATCAAAGCGCTTGAAACATAAGAAGTATGTTGCAGTAGATCGATCTCCGGCAGATACAGAGCCGTGCTGCGTGTGCCAGGAGGAATACAATGGTGGAGAAGATCTTGGAACGCTCGGATGCGGACATGATTTCCACAGCGAGTGCATAAAACAATGGCTGATGCACAAGAATTTGTGCCCCATCTGTAAAACTACAGCCTTGGCAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008285 GO:0009056 GO:0009057 GO:0009791 GO:0009908 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0022414 GO:0030163 GO:0031624 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0040008 GO:0042127 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0045926 GO:0046620 GO:0046621 GO:0048367 GO:0048437 GO:0048518 GO:0048519 GO:0048523 GO:0048608 GO:0048638 GO:0048640 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051094 GO:0051239 GO:0051240 GO:0051241 GO:0051603 GO:0051865 GO:0061458 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0090567 GO:0099402 GO:0140096 GO:1900055 GO:1900057 GO:1901564 GO:1901565 GO:1901575 GO:1905623 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

174

Amino Acids

19.24

Weight (kDa)

5.35

Isoelectric Point (pI)

53.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	124 - 167	2.9e-08	RING-H2 zinc finger domain
zf-RING_2	PF13639	126 - 167	8.7e-13	Ring finger domain
zf-C3HC4_2	PF13923	126 - 166	2.4e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	126 - 166	2.5e-06	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	126 - 153	2e-06	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45180 AT1G45180 AT1G45180 AT1G45180 AT5G42940 AT5G42940
fragaria_vesca	FvH4_2g34090 FvH4_2g34090
malus_domestica	MD08G1097400.v1.1 MD15G1079700.v1.1
prunus_persica	Prupe.1G432700_v2.0.a1
pyrus_communis	pycom08g07950 pycom15g07410 pycom15g07420
rosa_chinensis	RchiOBHm_Chr6g0308261
rosa_laevigata	RLG00000010653
rosa_multiflora	Rmu_ssc0000355.1_g000008
rosa_roxburghii	Rroxscaffold_7G00160310
rosa_rugosa	Rorug06G0365500 Rorug06G0365600 Rorug06G0365700 Rorug06G0365800
rosa_samantha	Rh6AG474500 Rh6BG485200 Rh6CG490200 Rh6DG476600
rosa_wichuraiana	Rw6G041390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	53
Acc36I	ACCTGC	1 cut(s)	53
AciI	CCGC	1 cut(s)	432
AcsI	RAATTY	1 cut(s)	481
AfaI	GTAC	1 cut(s)	111
AfeI	AGCGCT	1 cut(s)	320
AfiI	CCNNNNNNNGG	1 cut(s)	184
AflIII	ACRYGT	1 cut(s)	237
AgsI	TTSAA	1 cut(s)	325
AjnI	CCWGG	1 cut(s)	387
AjuI	GAANNNNNNNTTGG	2 cut(s)	258, 290
Alw26I	GTCTC	2 cut(s)	122, 207
Aor51HI	AGCGCT	1 cut(s)	320
ApeKI	GCWGC	4 cut(s)	56, 59, 378, 515
ApoI	RAATTY	1 cut(s)	481
AspLEI	GCGC	1 cut(s)	321
AspS9I	GGNCC	1 cut(s)	175
AsuHPI	GGTGA	2 cut(s)	26, 80
AvaII	GGWCC	1 cut(s)	175
BaeGI	GKGCMC	1 cut(s)	491
BbvI	GCAGC	3 cut(s)	43, 46, 365
BccI	CCATC	2 cut(s)	11, 500
BceAI	ACGGC	1 cut(s)	358
BciT130I	CCWGG	1 cut(s)	389
BcoDI	GTCTC	2 cut(s)	122, 207
BfmI	CTRYAG	2 cut(s)	60, 504
BfoI	RGCGCY	1 cut(s)	322
BfuAI	ACCTGC	1 cut(s)	53
BglII	AGATCT	1 cut(s)	412
BisI	GCNGC	4 cut(s)	57, 60, 379, 516
BlsI	GCNGC	4 cut(s)	58, 61, 380, 517
Bme1390I	CCNGG	1 cut(s)	389
Bme18I	GGWCC	1 cut(s)	175
BmgT120I	GGNCC	1 cut(s)	175
BmrFI	CCNGG	1 cut(s)	389
BmrI	ACTGGG	1 cut(s)	122
BmsI	GCATC	2 cut(s)	419, 462
BmuI	ACTGGG	1 cut(s)	122
Bsa29I	ATCGAT	2 cut(s)	169, 352
BsaI	GGTCTC	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	510
Bsc4I	CCNNNNNNNGG	1 cut(s)	184
Bse1I	ACTGG	2 cut(s)	117, 295
Bse3DI	GCAATG	1 cut(s)	112
BseBI	CCWGG	1 cut(s)	389
BseCI	ATCGAT	2 cut(s)	169, 352
BseDI	CCNNGG	1 cut(s)	510
BseGI	GGATG	2 cut(s)	157, 434
BseLI	CCNNNNNNNGG	1 cut(s)	184
BseMI	GCAATG	1 cut(s)	112
BseMII	CTCAG	1 cut(s)	84
BseNI	ACTGG	2 cut(s)	117, 295
BseSI	GKGCMC	1 cut(s)	491
BseXI	GCAGC	3 cut(s)	43, 46, 365
Bsh1285I	CGRYCG	2 cut(s)	173, 205
BshVI	ATCGAT	2 cut(s)	169, 352
BsiEI	CGRYCG	2 cut(s)	173, 205
BsiSI	CCGG	1 cut(s)	359
BslI	CCNNNNNNNGG	1 cut(s)	184
BsmAI	GTCTC	2 cut(s)	122, 207
Bso31I	GGTCTC	1 cut(s)	122
Bsp1286I	GDGCHC	1 cut(s)	491
Bsp143I	GATC	5 cut(s)	166, 170, 349, 353, 412
BspACI	CCGC	1 cut(s)	432
BspCNI	CTCAG	1 cut(s)	85
BspDI	ATCGAT	2 cut(s)	169, 352
BspMAI	CTGCAG	1 cut(s)	64
BspMI	ACCTGC	1 cut(s)	53
BspQI	GCTCTTC	1 cut(s)	261
BspTNI	GGTCTC	1 cut(s)	122
BsrDI	GCAATG	1 cut(s)	112
BsrI	ACTGG	2 cut(s)	117, 295
BssECI	CCNNGG	1 cut(s)	510
BssMI	GATC	5 cut(s)	166, 170, 349, 353, 412
BssT1I	CCWWGG	1 cut(s)	510
Bst2UI	CCWGG	1 cut(s)	389
Bst6I	CTCTTC	1 cut(s)	261
BstC8I	GCNNGC	1 cut(s)	83
BstDEI	CTNAG	1 cut(s)	93
BstF5I	GGATG	2 cut(s)	157, 434
BstH2I	RGCGCY	1 cut(s)	322
BstHHI	GCGC	1 cut(s)	321
BstKTI	GATC	5 cut(s)	169, 173, 352, 356, 415
BstMAI	GTCTC	2 cut(s)	122, 207
BstMBI	GATC	5 cut(s)	166, 170, 349, 353, 412
BstMCI	CGRYCG	2 cut(s)	173, 205
BstMWI	GCNNNNNNNGC	2 cut(s)	384, 515
BstNI	CCWGG	1 cut(s)	389
BstNSI	RCATGY	2 cut(s)	220, 241
BstSCI	CCNGG	1 cut(s)	387
BstSFI	CTRYAG	2 cut(s)	60, 504
BstSLI	GKGCMC	1 cut(s)	491
BstV1I	GCAGC	3 cut(s)	43, 46, 365
BstX2I	RGATCY	1 cut(s)	412
BstYI	RGATCY	1 cut(s)	412
Bsu15I	ATCGAT	2 cut(s)	169, 352
BsuTUI	ATCGAT	2 cut(s)	169, 352
BtsCI	GGATG	2 cut(s)	157, 434
BtsIMutI	CAGTG	1 cut(s)	288
BveI	ACCTGC	1 cut(s)	53
Cac8I	GCNNGC	1 cut(s)	83
CfoI	GCGC	1 cut(s)	321
Cfr13I	GGNCC	1 cut(s)	175
ClaI	ATCGAT	2 cut(s)	169, 352
Csp6I	GTAC	1 cut(s)	110
CviAII	CATG	6 cut(s)	11, 121, 217, 238, 437, 519
CviJI	RGCY	8 cut(s)	31, 56, 85, 191, 260, 373, 469, 509
CviKI_1	RGCY	8 cut(s)	31, 56, 85, 191, 260, 373, 469, 509
CviQI	GTAC	1 cut(s)	110
DdeI	CTNAG	1 cut(s)	93
DpnI	GATC	5 cut(s)	168, 172, 351, 355, 414
DpnII	GATC	5 cut(s)	166, 170, 349, 353, 412
Eam1104I	CTCTTC	1 cut(s)	261
EarI	CTCTTC	1 cut(s)	261
Eco130I	CCWWGG	1 cut(s)	510
Eco31I	GGTCTC	1 cut(s)	122
Eco47I	GGWCC	1 cut(s)	175
Eco47III	AGCGCT	1 cut(s)	320
EcoRII	CCWGG	1 cut(s)	387
EcoT14I	CCWWGG	1 cut(s)	510
ErhI	CCWWGG	1 cut(s)	510
FaeI	CATG	6 cut(s)	14, 124, 220, 241, 440, 522
FatI	CATG	6 cut(s)	10, 120, 216, 237, 436, 518
Fnu4HI	GCNGC	4 cut(s)	57, 60, 379, 516
FokI	GGATG	2 cut(s)	164, 441
Fsp4HI	GCNGC	4 cut(s)	57, 60, 379, 516
GlaI	GCGC	1 cut(s)	320
GluI	GCNGC	4 cut(s)	57, 60, 379, 516
HaeII	RGCGCY	1 cut(s)	322
HapII	CCGG	1 cut(s)	359
HhaI	GCGC	1 cut(s)	321
Hin1II	CATG	6 cut(s)	14, 124, 220, 241, 440, 522
Hin6I	GCGC	1 cut(s)	319
HinP1I	GCGC	1 cut(s)	319
HinfI	GANTC	2 cut(s)	144, 160
HpaII	CCGG	1 cut(s)	359
HphI	GGTGA	2 cut(s)	26, 80
Hpy166II	GTNNAC	2 cut(s)	23, 286
Hpy188I	TCNGA	2 cut(s)	94, 428
Hpy188III	TCNNGA	3 cut(s)	164, 200, 263
Hpy8I	GTNNAC	2 cut(s)	23, 286
HpyAV	CCTTC	1 cut(s)	65
HpyCH4IV	ACGT	1 cut(s)	282
HpyCH4V	TGCA	5 cut(s)	62, 105, 344, 456, 475
HpyF10VI	GCNNNNNNNGC	2 cut(s)	384, 515
HpyF3I	CTNAG	1 cut(s)	93
HpySE526I	ACGT	1 cut(s)	282
Hsp92II	CATG	6 cut(s)	14, 124, 220, 241, 440, 522
HspAI	GCGC	1 cut(s)	319
Kzo9I	GATC	5 cut(s)	166, 170, 349, 353, 412
LguI	GCTCTTC	1 cut(s)	261
LpnPI	CCDG	8 cut(s)	48, 67, 98, 248, 276, 372, 374, 401
Lsp1109I	GCAGC	3 cut(s)	43, 46, 365
LweI	GCATC	2 cut(s)	419, 462
MaeII	ACGT	1 cut(s)	282
MalI	GATC	5 cut(s)	168, 172, 351, 355, 414
MboI	GATC	5 cut(s)	166, 170, 349, 353, 412
MboII	GAAGA	3 cut(s)	278, 314, 422
MflI	RGATCY	1 cut(s)	412
MhlI	GDGCHC	1 cut(s)	491
MluCI	AATT	2 cut(s)	251, 481
MnlI	CCTC	3 cut(s)	142, 241, 385
MseI	TTAA	1 cut(s)	296
MslI	CAYNNNNRTG	1 cut(s)	15
MspI	CCGG	1 cut(s)	359
MspR9I	CCNGG	1 cut(s)	389
MvaI	CCWGG	1 cut(s)	389
MwoI	GCNNNNNNNGC	2 cut(s)	384, 515
NdeII	GATC	5 cut(s)	166, 170, 349, 353, 412
NlaIII	CATG	6 cut(s)	14, 124, 220, 241, 440, 522
NspI	RCATGY	2 cut(s)	220, 241
PaqCI	CACCTGC	1 cut(s)	53
PciI	ACATGT	1 cut(s)	237
PciSI	GCTCTTC	1 cut(s)	261
PfeI	GAWTC	2 cut(s)	144, 160
PkrI	GCNGC	4 cut(s)	58, 61, 380, 517
Ple19I	CGATCG	1 cut(s)	173
PscI	ACATGT	1 cut(s)	237
Psp6I	CCWGG	1 cut(s)	387
PspGI	CCWGG	1 cut(s)	387
PspPI	GGNCC	1 cut(s)	175
PstI	CTGCAG	1 cut(s)	64
PsuI	RGATCY	1 cut(s)	412
PvuI	CGATCG	1 cut(s)	173
RsaI	GTAC	1 cut(s)	111
RsaNI	GTAC	1 cut(s)	110
RseI	CAYNNNNRTG	1 cut(s)	15
SapI	GCTCTTC	1 cut(s)	261
SaqAI	TTAA	1 cut(s)	296
SatI	GCNGC	4 cut(s)	57, 60, 379, 516
Sau3AI	GATC	5 cut(s)	166, 170, 349, 353, 412
Sau96I	GGNCC	1 cut(s)	175
ScrFI	CCNGG	1 cut(s)	389
SduI	GDGCHC	1 cut(s)	491
SetI	ASST	2 cut(s)	67, 285
SfaNI	GCATC	2 cut(s)	419, 462
SfcI	CTRYAG	2 cut(s)	60, 504
SinI	GGWCC	1 cut(s)	175
SmiMI	CAYNNNNRTG	1 cut(s)	15
Sse9I	AATT	2 cut(s)	251, 481
SsiI	CCGC	1 cut(s)	432
StyD4I	CCNGG	1 cut(s)	387
StyI	CCWWGG	1 cut(s)	510
TaiI	ACGT	1 cut(s)	285
TaqI	TCGA	3 cut(s)	147, 169, 352
TaqII	GACCGA	2 cut(s)	163, 219
TasI	AATT	2 cut(s)	251, 481
TatI	WGTACW	1 cut(s)	109
TfiI	GAWTC	2 cut(s)	144, 160
Tru1I	TTAA	1 cut(s)	296
Tru9I	TTAA	1 cut(s)	296
TscAI	CASTG	1 cut(s)	295
TseI	GCWGC	4 cut(s)	56, 59, 378, 515
TspDTI	ATGAA	1 cut(s)	30
TspGWI	ACGGA	2 cut(s)	24, 61
TspRI	CASTG	1 cut(s)	295
VpaK11BI	GGWCC	1 cut(s)	175
XapI	RAATTY	1 cut(s)	481
XceI	RCATGY	2 cut(s)	220, 241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.