pycom15g07730

Coenzyme Q-binding protein COQ10 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0011040
Physical Location & Seq
Forward (+)
4765504 .. 4768030
2527 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 879 bp
ATGCGAAAAGTAGGACTTCCAAGTTTGAACGTGATTAAAATATGGACACGTCAACCTAAAATCCGTAAACGCATCCGGATCGTTCTTATTTTTGGTCCACTGCCAAGTCTAATCCCTTGGCTTCTGAGACTTTCGTATACCTCTCACGTAAATTCCTCAGCTTTTACGTCCCAAACTTTGCAAACATTTTTTACCAAAAAAAGAAAACTTATTAAACATTTGGGGCTTTCAATCTCCCTGTCAATTCGATCGCGTTCCATCGCAATTAGGGGTTCCCGATCGCAGAACCTCACAATGCCGCCGTTCTGGTCGAGCACGACCTCGAAGGCGGTGGGGTCCTTGCTCTCCCGCAGAATCGGTCCCAGGCATCTGGTCCGGTCCAGCCGGAAATTCGACCCGATTCGGTGCTTTAGTAGCATTGTGGGCATAGAAACCCCGTCATCATCGGTCCACAAATGGACCGCCGATTCCCAGCTGGATTTCAATTACAGGTCACGGAGGCAATTTCTCGGCTGCGGCGACGGCGAAGAAGGCGGCGTGTTATCCAAAGTTTATGAGGAGAAGCGCGTATTGGGGTATTCTCCGGAGCAGTTATACGATGTGGTTGCTGCGGTAGACTTGTATCATGGTTTCGTTCCCTGGTGTCAGCGGTCTGGCATAATTAAAAATTATCGGGATGGATCATTTGATGCTGAGCTCGAGATTGGGTTTAAATTTCTTGTTGAAAGTTACGTCTCCCATGTCGAATTAGAGAGACCAAAGCGTATAAAGTCAACTGTATCAAATAGTTCCCTTTTCGATCGATCTCATAAACATCTGGGAATTCAATCCGGGGCCAGTTCCAGGATCTTGCAGCCTTTATTTCTTGGTGGATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Polyketide_cyc

Protein Analysis

293

Amino Acids

33.1

Weight (kDa)

10.54

Isoelectric Point (pI)

57.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polyketide_cyc PF03364 192 - 259 2.1e-10 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011040)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17650
fragaria_vesca FvH4_2g34410 FvH4_2g34410
malus_domestica MD08G1101200.v1.1 MD15G1082400.v1.1
prunus_persica Prupe.1G435200_v2.0.a1 Prupe.1G435200_v2.0.a1
pyrus_communis pycom08g08180 pycom15g07730
rosa_chinensis RchiOBHm_Chr6g0307961
rosa_laevigata RLG00000010683
rosa_multiflora Rmu_sc0006237.1_g000001
rosa_roxburghii Rroxscaffold_7G00160730
rosa_rugosa Rorug06G0362100 Rorug06G0362200
rosa_samantha Rh6AG471100 Rh6BG482100 Rh6CG487500 Rh6DG473600
rosa_wichuraiana Rw6G041140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 137, 615
AccII CGCG 2 cut(s) 253, 567
AccIII TCCGGA 2 cut(s) 75, 583
AciI CCGC 8 cut(s) 299, 329, 349, 462, 516, 534, 611, 649
AclWI GGATC 3 cut(s) 86, 688, 854
AcsI RAATTY 4 cut(s) 151, 389, 713, 822
AfiI CCNNNNNNNGG 1 cut(s) 843
AflIII ACRYGT 1 cut(s) 47
AgsI TTSAA 5 cut(s) 28, 231, 484, 725, 827
AjiI CACGTC 1 cut(s) 50
AjnI CCWGG 3 cut(s) 362, 638, 842
AjuI GAANNNNNNNTTGG 2 cut(s) 554, 586
AluBI AGCT 3 cut(s) 161, 475, 697
AluI AGCT 3 cut(s) 161, 475, 697
Alw21I GWGCWC 2 cut(s) 317, 699
Alw26I GTCTC 3 cut(s) 121, 739, 748
AlwI GGATC 3 cut(s) 86, 688, 854
Ama87I CYCGRG 1 cut(s) 698
Aor13HI TCCGGA 2 cut(s) 75, 583
AoxI GGCC 1 cut(s) 834
ApeKI GCWGC 3 cut(s) 513, 608, 853
ApoI RAATTY 4 cut(s) 151, 389, 713, 822
AspLEI GCGC 1 cut(s) 567
AspS9I GGNCC 8 cut(s) 95, 336, 359, 373, 378, 448, 459, 834
AsuC2I CCSGG 1 cut(s) 832
AvaI CYCGRG 1 cut(s) 698
AvaII GGWCC 7 cut(s) 95, 336, 359, 373, 378, 448, 459
BanII GRGCYC 1 cut(s) 699
Bbv12I GWGCWC 2 cut(s) 317, 699
BbvCI CCTCAGC 1 cut(s) 157
BbvI GCAGC 3 cut(s) 500, 595, 865
BccI CCATC 2 cut(s) 266, 671
BceAI ACGGC 2 cut(s) 286, 538
BcgI CGANNNNNNTGC 4 cut(s) 61, 95, 587, 621
BciT130I CCWGG 3 cut(s) 364, 640, 844
BcnI CCSGG 1 cut(s) 832
BcoDI GTCTC 3 cut(s) 121, 739, 748
BisI GCNGC 6 cut(s) 299, 514, 517, 535, 609, 854
BlpI GCTNAGC 1 cut(s) 693
BlsI GCNGC 6 cut(s) 300, 515, 518, 536, 610, 855
Bme1390I CCNGG 4 cut(s) 364, 640, 832, 844
Bme18I GGWCC 7 cut(s) 95, 336, 359, 373, 378, 448, 459
BmeT110I CYCGRG 1 cut(s) 698
BmgBI CACGTC 1 cut(s) 50
BmgT120I GGNCC 8 cut(s) 95, 336, 359, 373, 378, 448, 459, 834
BmiI GGNNCC 4 cut(s) 274, 337, 361, 835
BmrFI CCNGG 4 cut(s) 364, 640, 832, 844
BmsI GCATC 3 cut(s) 81, 376, 679
Bpu10I CCTNAGC 1 cut(s) 157
Bpu1102I GCTNAGC 1 cut(s) 693
BpuMI CCSGG 1 cut(s) 832
Bsa29I ATCGAT 1 cut(s) 802
BsaAI YACGTR 1 cut(s) 148
BsaI GGTCTC 1 cut(s) 748
BsaJI CCNNGG 4 cut(s) 116, 362, 638, 831
BsaWI WCCGGW 3 cut(s) 75, 375, 583
Bsc4I CCNNNNNNNGG 1 cut(s) 843
Bse1I ACTGG 1 cut(s) 837
BseAI TCCGGA 2 cut(s) 75, 583
BseBI CCWGG 3 cut(s) 364, 640, 844
BseCI ATCGAT 1 cut(s) 802
BseDI CCNNGG 4 cut(s) 116, 362, 638, 831
BseGI GGATG 2 cut(s) 72, 682
BseLI CCNNNNNNNGG 1 cut(s) 843
BseMII CTCAG 3 cut(s) 116, 171, 684
BseNI ACTGG 1 cut(s) 837
BseRI GAGGAG 1 cut(s) 572
BseXI GCAGC 3 cut(s) 500, 595, 865
BseYI CCCAGC 1 cut(s) 471
Bsh1236I CGCG 2 cut(s) 253, 567
Bsh1285I CGRYCG 3 cut(s) 251, 281, 802
BshFI GGCC 1 cut(s) 836
BshVI ATCGAT 1 cut(s) 802
BsiEI CGRYCG 3 cut(s) 251, 281, 802
BsiHKAI GWGCWC 2 cut(s) 317, 699
BsiHKCI CYCGRG 1 cut(s) 698
BsiSI CCGG 5 cut(s) 76, 376, 385, 584, 831
BslFI GGGAC 2 cut(s) 154, 345
BslI CCNNNNNNNGG 1 cut(s) 843
BsmAI GTCTC 3 cut(s) 121, 739, 748
BsmBI CGTCTC 1 cut(s) 739
BsmFI GGGAC 2 cut(s) 154, 345
BsnI GGCC 1 cut(s) 836
Bso31I GGTCTC 1 cut(s) 748
BsoBI CYCGRG 1 cut(s) 698
Bsp1286I GDGCHC 2 cut(s) 317, 699
Bsp13I TCCGGA 2 cut(s) 75, 583
Bsp143I GATC 7 cut(s) 78, 248, 278, 680, 799, 803, 846
Bsp1720I GCTNAGC 1 cut(s) 693
BspACI CCGC 8 cut(s) 299, 329, 349, 462, 516, 534, 611, 649
BspANI GGCC 1 cut(s) 836
BspCNI CTCAG 3 cut(s) 117, 170, 685
BspDI ATCGAT 1 cut(s) 802
BspEI TCCGGA 2 cut(s) 75, 583
BspFNI CGCG 2 cut(s) 253, 567
BspLI GGNNCC 4 cut(s) 274, 337, 361, 835
BspPI GGATC 3 cut(s) 86, 688, 854
BspTNI GGTCTC 1 cut(s) 748
BsrI ACTGG 1 cut(s) 837
BssECI CCNNGG 4 cut(s) 116, 362, 638, 831
BssMI GATC 7 cut(s) 78, 248, 278, 680, 799, 803, 846
BssNAI GTATAC 1 cut(s) 138
BssT1I CCWWGG 1 cut(s) 116
Bst1107I GTATAC 1 cut(s) 138
Bst2UI CCWGG 3 cut(s) 364, 640, 844
Bst4CI ACNGT 1 cut(s) 778
BstBAI YACGTR 1 cut(s) 148
BstDEI CTNAG 3 cut(s) 125, 157, 693
BstF5I GGATG 2 cut(s) 72, 682
BstFNI CGCG 2 cut(s) 253, 567
BstHHI GCGC 1 cut(s) 567
BstKTI GATC 7 cut(s) 81, 251, 281, 683, 802, 806, 849
BstMAI GTCTC 3 cut(s) 121, 739, 748
BstMBI GATC 7 cut(s) 78, 248, 278, 680, 799, 803, 846
BstMCI CGRYCG 3 cut(s) 251, 281, 802
BstMWI GCNNNNNNNGC 4 cut(s) 414, 423, 522, 531
BstNI CCWGG 3 cut(s) 364, 640, 844
BstSCI CCNGG 4 cut(s) 362, 638, 830, 842
BstUI CGCG 2 cut(s) 253, 567
BstV1I GCAGC 3 cut(s) 500, 595, 865
BstX2I RGATCY 1 cut(s) 846
BstXI CCANNNNNNTGG 1 cut(s) 370
BstYI RGATCY 1 cut(s) 846
BstZ17I GTATAC 1 cut(s) 138
Bsu15I ATCGAT 1 cut(s) 802
BsuRI GGCC 1 cut(s) 836
BsuTUI ATCGAT 1 cut(s) 802
BtgZI GCGATG 1 cut(s) 244
BtrI CACGTC 1 cut(s) 50
BtsCI GGATG 2 cut(s) 72, 682
BtsI GCAGTG 1 cut(s) 98
BtsIMutI CAGTG 1 cut(s) 98
CfoI GCGC 1 cut(s) 567
Cfr13I GGNCC 8 cut(s) 95, 336, 359, 373, 378, 448, 459, 834
ClaI ATCGAT 1 cut(s) 802
CviAII CATG 2 cut(s) 626, 740
CviJI RGCY 9 cut(s) 121, 161, 226, 384, 475, 513, 697, 836, 856
CviKI_1 RGCY 9 cut(s) 121, 161, 226, 384, 475, 513, 697, 836, 856
DdeI CTNAG 3 cut(s) 125, 157, 693
DpnI GATC 7 cut(s) 80, 250, 280, 682, 801, 805, 848
DpnII GATC 7 cut(s) 78, 248, 278, 680, 799, 803, 846
DraI TTTAAA 1 cut(s) 712
Ecl136II GAGCTC 1 cut(s) 697
Eco130I CCWWGG 1 cut(s) 116
Eco24I GRGCYC 1 cut(s) 699
Eco31I GGTCTC 1 cut(s) 748
Eco47I GGWCC 7 cut(s) 95, 336, 359, 373, 378, 448, 459
Eco53kI GAGCTC 1 cut(s) 697
Eco88I CYCGRG 1 cut(s) 698
EcoICRI GAGCTC 1 cut(s) 697
EcoO109I RGGNCCY 1 cut(s) 336
EcoRI GAATTC 1 cut(s) 822
EcoRII CCWGG 3 cut(s) 362, 638, 842
EcoT14I CCWWGG 1 cut(s) 116
EcoT38I GRGCYC 1 cut(s) 699
ErhI CCWWGG 1 cut(s) 116
Esp3I CGTCTC 1 cut(s) 739
FaeI CATG 2 cut(s) 629, 743
FalI AAGNNNNNCTT 1 cut(s) 32
FaqI GGGAC 2 cut(s) 154, 345
FatI CATG 2 cut(s) 625, 739
FauI CCCGC 1 cut(s) 356
FblI GTMKAC 2 cut(s) 137, 615
Fnu4HI GCNGC 6 cut(s) 299, 514, 517, 535, 609, 854
FokI GGATG 2 cut(s) 59, 689
FriOI GRGCYC 1 cut(s) 699
Fsp4HI GCNGC 6 cut(s) 299, 514, 517, 535, 609, 854
GlaI GCGC 1 cut(s) 566
GluI GCNGC 6 cut(s) 299, 514, 517, 535, 609, 854
GsaI CCCAGC 1 cut(s) 475
HaeIII GGCC 1 cut(s) 836
HapII CCGG 5 cut(s) 76, 376, 385, 584, 831
HhaI GCGC 1 cut(s) 567
Hin1II CATG 2 cut(s) 629, 743
Hin6I GCGC 1 cut(s) 565
HinP1I GCGC 1 cut(s) 565
HincII GTYRAC 2 cut(s) 53, 774
HindII GTYRAC 2 cut(s) 53, 774
HinfI GANTC 3 cut(s) 354, 400, 467
HpaII CCGG 5 cut(s) 76, 376, 385, 584, 831
Hpy166II GTNNAC 7 cut(s) 53, 68, 98, 138, 451, 616, 774
Hpy188I TCNGA 1 cut(s) 126
Hpy188III TCNNGA 5 cut(s) 76, 276, 584, 674, 700
Hpy8I GTNNAC 7 cut(s) 53, 68, 98, 138, 451, 616, 774
Hpy99I CGWCG 1 cut(s) 524
HpyAV CCTTC 2 cut(s) 319, 524
HpyCH4III ACNGT 1 cut(s) 778
HpyCH4IV ACGT 5 cut(s) 30, 49, 147, 167, 732
HpyCH4V TGCA 2 cut(s) 181, 853
HpyF10VI GCNNNNNNNGC 4 cut(s) 414, 423, 522, 531
HpyF3I CTNAG 3 cut(s) 125, 157, 693
HpySE526I ACGT 5 cut(s) 30, 49, 147, 167, 732
Hsp92II CATG 2 cut(s) 629, 743
HspAI GCGC 1 cut(s) 565
Kpn2I TCCGGA 2 cut(s) 75, 583
Kzo9I GATC 7 cut(s) 78, 248, 278, 680, 799, 803, 846
LmnI GCTCC 1 cut(s) 586
Lsp1109I GCAGC 3 cut(s) 500, 595, 865
LweI GCATC 3 cut(s) 81, 376, 679
MaeII ACGT 5 cut(s) 30, 49, 147, 167, 732
MaeIII GTNAC 2 cut(s) 492, 728
MalI GATC 7 cut(s) 80, 250, 280, 682, 801, 805, 848
MboI GATC 7 cut(s) 78, 248, 278, 680, 799, 803, 846
MboII GAAGA 1 cut(s) 539
MflI RGATCY 1 cut(s) 846
MhlI GDGCHC 2 cut(s) 317, 699
MnlI CCTC 6 cut(s) 151, 166, 299, 331, 492, 550
MroI TCCGGA 2 cut(s) 75, 583
MseI TTAA 5 cut(s) 36, 213, 663, 711, 877
MspA1I CMGCKG 2 cut(s) 475, 649
MspI CCGG 5 cut(s) 76, 376, 385, 584, 831
MspR9I CCNGG 4 cut(s) 364, 640, 832, 844
MvaI CCWGG 3 cut(s) 364, 640, 844
MvnI CGCG 2 cut(s) 253, 567
MwoI GCNNNNNNNGC 4 cut(s) 414, 423, 522, 531
NciI CCSGG 1 cut(s) 832
NdeII GATC 7 cut(s) 78, 248, 278, 680, 799, 803, 846
NlaIII CATG 2 cut(s) 629, 743
NlaIV GGNNCC 4 cut(s) 274, 337, 361, 835
NmeAIII GCCGAG 1 cut(s) 489
NmuCI GTSAC 1 cut(s) 492
PaeR7I CTCGAG 1 cut(s) 698
PcsI WCGNNNNNNNCGW 1 cut(s) 516
PfeI GAWTC 3 cut(s) 354, 400, 467
PfoI TCCNGGA 1 cut(s) 842
PkrI GCNGC 6 cut(s) 300, 515, 518, 536, 610, 855
Ple19I CGATCG 3 cut(s) 251, 281, 802
Ppu21I YACGTR 1 cut(s) 148
PpuMI RGGWCCY 1 cut(s) 336
Psp124BI GAGCTC 1 cut(s) 699
Psp5II RGGWCCY 1 cut(s) 336
Psp6I CCWGG 3 cut(s) 362, 638, 842
PspFI CCCAGC 1 cut(s) 471
PspGI CCWGG 3 cut(s) 362, 638, 842
PspN4I GGNNCC 4 cut(s) 274, 337, 361, 835
PspPI GGNCC 8 cut(s) 95, 336, 359, 373, 378, 448, 459, 834
PspPPI RGGWCCY 1 cut(s) 336
PsuI RGATCY 1 cut(s) 846
PvuI CGATCG 3 cut(s) 251, 281, 802
PvuII CAGCTG 1 cut(s) 475
SacI GAGCTC 1 cut(s) 699
SaqAI TTAA 5 cut(s) 36, 213, 663, 711, 877
SatI GCNGC 6 cut(s) 299, 514, 517, 535, 609, 854
Sau3AI GATC 7 cut(s) 78, 248, 278, 680, 799, 803, 846
Sau96I GGNCC 8 cut(s) 95, 336, 359, 373, 378, 448, 459, 834
ScrFI CCNGG 4 cut(s) 364, 640, 832, 844
SduI GDGCHC 2 cut(s) 317, 699
SfaNI GCATC 3 cut(s) 81, 376, 679
Sfr274I CTCGAG 1 cut(s) 698
SinI GGWCC 7 cut(s) 95, 336, 359, 373, 378, 448, 459
SlaI CTCGAG 1 cut(s) 698
SmlI CTYRAG 1 cut(s) 698
SmoI CTYRAG 1 cut(s) 698
SsiI CCGC 8 cut(s) 299, 329, 349, 462, 516, 534, 611, 649
SstI GAGCTC 1 cut(s) 699
StyD4I CCNGG 4 cut(s) 362, 638, 830, 842
StyI CCWWGG 1 cut(s) 116
TaaI ACNGT 1 cut(s) 778
TaiI ACGT 5 cut(s) 33, 52, 150, 170, 735
TaqI TCGA 8 cut(s) 247, 311, 323, 393, 699, 744, 798, 802
TaqII GACCGA 2 cut(s) 347, 436
TauI GCSGC 3 cut(s) 301, 519, 537
TfiI GAWTC 3 cut(s) 354, 400, 467
Tru1I TTAA 5 cut(s) 36, 213, 663, 711, 877
Tru9I TTAA 5 cut(s) 36, 213, 663, 711, 877
TscAI CASTG 1 cut(s) 105
TseFI GTSAC 1 cut(s) 492
TseI GCWGC 3 cut(s) 513, 608, 853
Tsp45I GTSAC 1 cut(s) 492
TspGWI ACGGA 2 cut(s) 53, 511
TspRI CASTG 1 cut(s) 105
VpaK11BI GGWCC 7 cut(s) 95, 336, 359, 373, 378, 448, 459
XapI RAATTY 4 cut(s) 151, 389, 713, 822
XhoI CTCGAG 1 cut(s) 698
XmiI GTMKAC 2 cut(s) 137, 615
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.