Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0007778

Physical Location & Seq

Genomic Coordinates Reverse (-)

5452255 .. 5454974

Gene Structure 2720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g08590.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGACATCCCTCGCCTTACCTTTACCTTACCCTCATCCTCCGGCTTACAAGCCCACCAAAAATCTCTCTGCTTCTCTCAGAGCACTGAGCAGTTTACTCTTCGTCTTCGTTGCTCTCAACTCAACAAAACCCATGTTTCGAAACGCTTCTCAGCATCCAAACAAGCCACAGAAGCAAGAAAGAGAATGGTTGGCAGTGAGCTTTAAGCCAGAGAACTTTATTCCAGGAGTTGTCATTGGCTTCATTCTTGGGTTGTTGCTGGATTTATCACAGCCCGGTAAGGGTCGATCGAAGAAGAACAATGCTTCGGTAGGCCAGCTCCAACAGCGGAGTTTGGTCACAAGCAATGTCAGTGGTGGTGAAGAACTTAAAATGGTACTGGTAGTTAGACGAGACCTAAAGATGACAACGGGTAAAATTGCATCTCAGTGTGCTCATGCTGCCACTGGCGCGTATGCAGAACTGATGCAAAGCCACAGATCCCTTTTGAGACAGTGGGAGCAACACGGGCAACCCAAAATAGTGGTTGCATGCAAGAATCAACAAGAAATGAATAAGCTGAAGGAAGCAGCTGAGAACATTGGCATTCCAACTTTTGTCGTTGCTGATGCAGGGCGAACACAGGTTGTGAGTGGATCGAAGACAGTTCTTGCCATTGGACCTGGACCAAAAGAATCAGTAGATTCAGTGACAGGGAAACAGGCTCTTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PTH2

Protein Analysis

238

Amino Acids

25.67

Weight (kDa)

10.01

Isoelectric Point (pI)

40.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32900 AT4G32900 AT4G32900 AT4G32900
fragaria_vesca	FvH4_2g35470 FvH4_2g35470
malus_domestica	MD15G1092700.v1.1
prunus_persica	Prupe.1G447600_v2.0.a1 Prupe.1G447600_v2.0.a1 Prupe.1G447600_v2.0.a1 Prupe.1G447600_v2.0.a1 Prupe.1G447600_v2.0.a1 Prupe.1G447600_v2.0.a1 Prupe.1G447600_v2.0.a1
pyrus_communis	pycom15g08590
rosa_chinensis	RchiOBHm_Chr6g0306411
rosa_laevigata	RLG00000010799
rosa_multiflora	Rmu_sc0002971.1_g000025
rosa_roxburghii	Rroxscaffold_7G00161800
rosa_rugosa	Rorug06G0348900 Rorug06G0349000
rosa_samantha	Rh6AG461400 Rh6BG439700
rosa_wichuraiana	Rw6G040210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	452
AciI	CCGC	1 cut(s)	328
AclWI	GGATC	2 cut(s)	474, 643
AcuI	CTGAAG	1 cut(s)	581
AfaI	GTAC	1 cut(s)	378
AfiI	CCNNNNNNNGG	1 cut(s)	281
AjnI	CCWGG	2 cut(s)	223, 661
AluBI	AGCT	4 cut(s)	201, 319, 559, 572
AluI	AGCT	4 cut(s)	201, 319, 559, 572
Alw21I	GWGCWC	2 cut(s)	85, 436
Alw26I	GTCTC	2 cut(s)	387, 484
AlwI	GGATC	2 cut(s)	474, 643
AoxI	GGCC	1 cut(s)	313
ApeKI	GCWGC	2 cut(s)	440, 569
Asp700I	GAANNNNTTC	1 cut(s)	145
AspLEI	GCGC	1 cut(s)	452
AspS9I	GGNCC	2 cut(s)	659, 665
AsuC2I	CCSGG	1 cut(s)	276
AsuHPI	GGTGA	1 cut(s)	371
AsuII	TTCGAA	1 cut(s)	139
AvaII	GGWCC	2 cut(s)	659, 665
BbsI	GAAGAC	2 cut(s)	97, 647
Bbv12I	GWGCWC	2 cut(s)	85, 436
BbvI	GCAGC	2 cut(s)	427, 581
BciT130I	CCWGG	2 cut(s)	225, 663
BcnI	CCSGG	1 cut(s)	276
BcoDI	GTCTC	2 cut(s)	387, 484
BisI	GCNGC	2 cut(s)	441, 570
BlsI	GCNGC	2 cut(s)	442, 571
Bme1390I	CCNGG	3 cut(s)	225, 276, 663
Bme18I	GGWCC	2 cut(s)	659, 665
BmgT120I	GGNCC	2 cut(s)	659, 665
BmrFI	CCNGG	3 cut(s)	225, 276, 663
BmsI	GCATC	4 cut(s)	163, 431, 456, 598
BpiI	GAAGAC	2 cut(s)	97, 647
Bpu14I	TTCGAA	1 cut(s)	139
BpuMI	CCSGG	1 cut(s)	276
BsaI	GGTCTC	1 cut(s)	387
Bsc4I	CCNNNNNNNGG	1 cut(s)	281
Bse1I	ACTGG	2 cut(s)	384, 451
Bse3DI	GCAATG	1 cut(s)	352
BseBI	CCWGG	2 cut(s)	225, 663
BseGI	GGATG	3 cut(s)	5, 34, 154
BseLI	CCNNNNNNNGG	1 cut(s)	281
BseMI	GCAATG	1 cut(s)	352
BseMII	CTCAG	5 cut(s)	77, 91, 164, 440, 564
BseNI	ACTGG	2 cut(s)	384, 451
BseXI	GCAGC	2 cut(s)	427, 581
Bsh1236I	CGCG	1 cut(s)	452
Bsh1285I	CGRYCG	1 cut(s)	290
BshFI	GGCC	1 cut(s)	315
BsiEI	CGRYCG	1 cut(s)	290
BsiHKAI	GWGCWC	2 cut(s)	85, 436
BsiSI	CCGG	2 cut(s)	41, 276
BslI	CCNNNNNNNGG	1 cut(s)	281
BsmAI	GTCTC	2 cut(s)	387, 484
BsmI	GAATGC	1 cut(s)	585
BsnI	GGCC	1 cut(s)	315
Bso31I	GGTCTC	1 cut(s)	387
Bsp119I	TTCGAA	1 cut(s)	139
Bsp1286I	GDGCHC	2 cut(s)	85, 436
Bsp143I	GATC	3 cut(s)	287, 479, 635
BspACI	CCGC	1 cut(s)	328
BspANI	GGCC	1 cut(s)	315
BspCNI	CTCAG	5 cut(s)	78, 90, 163, 439, 565
BspFNI	CGCG	1 cut(s)	452
BspPI	GGATC	2 cut(s)	474, 643
BspQI	GCTCTTC	1 cut(s)	711
BspT104I	TTCGAA	1 cut(s)	139
BspTNI	GGTCTC	1 cut(s)	387
BsrDI	GCAATG	1 cut(s)	352
BsrI	ACTGG	2 cut(s)	384, 451
BssMI	GATC	3 cut(s)	287, 479, 635
Bst2UI	CCWGG	2 cut(s)	225, 663
Bst4CI	ACNGT	2 cut(s)	495, 646
Bst6I	CTCTTC	2 cut(s)	104, 711
BstBI	TTCGAA	1 cut(s)	139
BstC8I	GCNNGC	2 cut(s)	317, 532
BstDEI	CTNAG	5 cut(s)	77, 86, 150, 426, 573
BstF5I	GGATG	3 cut(s)	5, 34, 154
BstFNI	CGCG	1 cut(s)	452
BstHHI	GCGC	1 cut(s)	452
BstKTI	GATC	3 cut(s)	290, 482, 638
BstMAI	GTCTC	2 cut(s)	387, 484
BstMBI	GATC	3 cut(s)	287, 479, 635
BstMCI	CGRYCG	1 cut(s)	290
BstMWI	GCNNNNNNNGC	5 cut(s)	172, 325, 440, 449, 508
BstNI	CCWGG	2 cut(s)	225, 663
BstNSI	RCATGY	1 cut(s)	534
BstSCI	CCNGG	3 cut(s)	223, 274, 661
BstUI	CGCG	1 cut(s)	452
BstV1I	GCAGC	2 cut(s)	427, 581
BstV2I	GAAGAC	2 cut(s)	97, 647
BstX2I	RGATCY	1 cut(s)	479
BstXI	CCANNNNNNTGG	1 cut(s)	523
BstYI	RGATCY	1 cut(s)	479
BsuRI	GGCC	1 cut(s)	315
BtsCI	GGATG	3 cut(s)	5, 34, 154
BtsI	GCAGTG	1 cut(s)	201
BtsIMutI	CAGTG	7 cut(s)	83, 201, 358, 434, 444, 500, 693
Cac8I	GCNNGC	2 cut(s)	317, 532
CfoI	GCGC	1 cut(s)	452
Cfr13I	GGNCC	2 cut(s)	659, 665
Csp6I	GTAC	1 cut(s)	377
CspCI	CAANNNNNGTGG	2 cut(s)	334, 369
CviAII	CATG	3 cut(s)	133, 437, 531
CviQI	GTAC	1 cut(s)	377
DdeI	CTNAG	5 cut(s)	77, 86, 150, 426, 573
DpnI	GATC	3 cut(s)	289, 481, 637
DpnII	GATC	3 cut(s)	287, 479, 635
Eam1104I	CTCTTC	2 cut(s)	104, 711
EarI	CTCTTC	2 cut(s)	104, 711
Eco31I	GGTCTC	1 cut(s)	387
Eco47I	GGWCC	2 cut(s)	659, 665
Eco57I	CTGAAG	1 cut(s)	581
EcoRII	CCWGG	2 cut(s)	223, 661
FaeI	CATG	3 cut(s)	136, 440, 534
FaiI	YATR	5 cut(s)	134, 438, 456, 532, 712
FatI	CATG	3 cut(s)	132, 436, 530
Fnu4HI	GCNGC	2 cut(s)	441, 570
FokI	GGATG	2 cut(s)	21, 141
Fsp4HI	GCNGC	2 cut(s)	441, 570
GlaI	GCGC	1 cut(s)	451
GluI	GCNGC	2 cut(s)	441, 570
HaeIII	GGCC	1 cut(s)	315
HapII	CCGG	2 cut(s)	41, 276
HhaI	GCGC	1 cut(s)	452
Hin1II	CATG	3 cut(s)	136, 440, 534
Hin6I	GCGC	1 cut(s)	450
HinP1I	GCGC	1 cut(s)	450
HinfI	GANTC	3 cut(s)	538, 674, 683
HpaII	CCGG	2 cut(s)	41, 276
HphI	GGTGA	1 cut(s)	371
Hpy166II	GTNNAC	1 cut(s)	95
Hpy188I	TCNGA	1 cut(s)	80
Hpy8I	GTNNAC	1 cut(s)	95
HpyAV	CCTTC	1 cut(s)	556
HpyCH4III	ACNGT	2 cut(s)	495, 646
HpyCH4V	TGCA	6 cut(s)	422, 458, 469, 530, 534, 611
HpyF10VI	GCNNNNNNNGC	5 cut(s)	172, 325, 440, 449, 508
HpyF3I	CTNAG	5 cut(s)	77, 86, 150, 426, 573
Hsp92II	CATG	3 cut(s)	136, 440, 534
HspAI	GCGC	1 cut(s)	450
Kzo9I	GATC	3 cut(s)	287, 479, 635
LguI	GCTCTTC	1 cut(s)	711
LmnI	GCTCC	2 cut(s)	324, 499
Lsp1109I	GCAGC	2 cut(s)	427, 581
LweI	GCATC	4 cut(s)	163, 431, 456, 598
MaeIII	GTNAC	2 cut(s)	337, 688
MalI	GATC	3 cut(s)	289, 481, 637
MboI	GATC	3 cut(s)	287, 479, 635
MboII	GAAGA	7 cut(s)	91, 97, 304, 307, 374, 652, 698
MflI	RGATCY	1 cut(s)	479
MhlI	GDGCHC	2 cut(s)	85, 436
MluCI	AATT	1 cut(s)	417
MmeI	TCCRAC	2 cut(s)	346, 614
MnlI	CCTC	3 cut(s)	20, 42, 48
MroXI	GAANNNNTTC	1 cut(s)	145
MseI	TTAA	2 cut(s)	204, 369
MslI	CAYNNNNRTG	1 cut(s)	427
MspA1I	CMGCKG	2 cut(s)	328, 572
MspI	CCGG	2 cut(s)	41, 276
MspR9I	CCNGG	3 cut(s)	225, 276, 663
Mva1269I	GAATGC	1 cut(s)	585
MvaI	CCWGG	2 cut(s)	225, 663
MvnI	CGCG	1 cut(s)	452
MwoI	GCNNNNNNNGC	5 cut(s)	172, 325, 440, 449, 508
NciI	CCSGG	1 cut(s)	276
NdeII	GATC	3 cut(s)	287, 479, 635
NlaIII	CATG	3 cut(s)	136, 440, 534
NmuCI	GTSAC	2 cut(s)	337, 688
NspI	RCATGY	1 cut(s)	534
NspV	TTCGAA	1 cut(s)	139
PaeI	GCATGC	1 cut(s)	534
PciSI	GCTCTTC	1 cut(s)	711
PctI	GAATGC	1 cut(s)	585
PdmI	GAANNNNTTC	1 cut(s)	145
PfeI	GAWTC	3 cut(s)	538, 674, 683
PfoI	TCCNGGA	1 cut(s)	223
PkrI	GCNGC	2 cut(s)	442, 571
Ple19I	CGATCG	1 cut(s)	290
Psp6I	CCWGG	2 cut(s)	223, 661
PspGI	CCWGG	2 cut(s)	223, 661
PspPI	GGNCC	2 cut(s)	659, 665
PsuI	RGATCY	1 cut(s)	479
PvuI	CGATCG	1 cut(s)	290
PvuII	CAGCTG	1 cut(s)	572
RsaI	GTAC	1 cut(s)	378
RsaNI	GTAC	1 cut(s)	377
RseI	CAYNNNNRTG	1 cut(s)	427
SapI	GCTCTTC	1 cut(s)	711
SaqAI	TTAA	2 cut(s)	204, 369
SatI	GCNGC	2 cut(s)	441, 570
Sau3AI	GATC	3 cut(s)	287, 479, 635
Sau96I	GGNCC	2 cut(s)	659, 665
ScrFI	CCNGG	3 cut(s)	225, 276, 663
SduI	GDGCHC	2 cut(s)	85, 436
SetI	ASST	9 cut(s)	22, 28, 203, 321, 399, 561, 574, 627, 664
SfaNI	GCATC	4 cut(s)	163, 431, 456, 598
SfuI	TTCGAA	1 cut(s)	139
SinI	GGWCC	2 cut(s)	659, 665
SmiMI	CAYNNNNRTG	1 cut(s)	427
SphI	GCATGC	1 cut(s)	534
Sse9I	AATT	1 cut(s)	417
SsiI	CCGC	1 cut(s)	328
StyD4I	CCNGG	3 cut(s)	223, 274, 661
TaaI	ACNGT	2 cut(s)	495, 646
TaqI	TCGA	4 cut(s)	139, 286, 290, 638
TasI	AATT	1 cut(s)	417
TfiI	GAWTC	3 cut(s)	538, 674, 683
Tru1I	TTAA	2 cut(s)	204, 369
Tru9I	TTAA	2 cut(s)	204, 369
TscAI	CASTG	7 cut(s)	90, 201, 358, 434, 451, 500, 693
TseFI	GTSAC	2 cut(s)	337, 688
TseI	GCWGC	2 cut(s)	440, 569
Tsp45I	GTSAC	2 cut(s)	337, 688
TspDTI	ATGAA	2 cut(s)	232, 566
TspRI	CASTG	7 cut(s)	90, 201, 358, 434, 451, 500, 693
VpaK11BI	GGWCC	2 cut(s)	659, 665
XceI	RCATGY	1 cut(s)	534
XmnI	GAANNNNTTC	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.