Rh6BG439700

peptidyl-tRNA hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0007778
Physical Location & Seq
Reverse (-)
65813579 .. 65816161
2583 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG439700.1

Sequence Viewer

Length: 654 bp
ATGTTTGGTTCATTAAGAATTTCTTCCCAGAATCCAAGAAAGCAGCAGCAGAAGCAAGAACGAGAATGGTTAAACTTGAGTTTTAAGCCAGAGAATTTCCTTCCAGGAGTTGTCATTGGCTTCATTCTTGGGTTGTTGTTGGATTTATCACAACCTGGTAAGGGTTCCTTGAAGTTGAAGAGGAAAAATTTCTCGGAGGGAAAGCCCCAACAGCGAAGTTTGGTCTCGACTAATGGTGATGAAGAGCTTAAAATGGTTCTTGTAGTTAGACGAGACTTAAAGATGACAACTGGAAAAATCGCATCTCAGTGTGCTCATGCTGCCACTGGCATGTATGCAGAACTGATGCAAAGCCATAGGTCCCTTTTGAGACAATGGGAGGAAAATGGGCAACCCAAAATAGTGGTTACATGCAAGAATCAACAAGAAATGAATAAGCTGAAAGAAGCAGCTGAGGGCATTGGCCTTCCAACTTTTGTTGTCGCTGATGCAGGGCGAACACAGGTTGTGAGTGGGTCAAAGACAGTTCTTGCCGTTGGACCAGGTATGTGTCTCACACTTCGCTGTAAAATAGTTTTTGTTGAATGGCTTTGTAGACACATGTGCCATCCTTTTGCTCCATTAATGAAAGTAGTAGATTTAACCCAACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
PTH2

Protein Analysis

217

Amino Acids

24.27

Weight (kDa)

9.67

Isoelectric Point (pI)

38.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTH2 PF01981 83 - 182 2e-38 Peptidyl-tRNA hydrolase PTH2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 595
AcsI RAATTY 3 cut(s) 18, 94, 187
AfiI CCNNNNNNNGG 1 cut(s) 161
AflIII ACRYGT 1 cut(s) 600
AgsI TTSAA 3 cut(s) 172, 178, 584
AjnI CCWGG 3 cut(s) 103, 154, 541
AluBI AGCT 3 cut(s) 247, 439, 452
AluI AGCT 3 cut(s) 247, 439, 452
Alw21I GWGCWC 1 cut(s) 316
Alw26I GTCTC 4 cut(s) 229, 267, 364, 557
AoxI GGCC 1 cut(s) 463
ApeKI GCWGC 4 cut(s) 43, 46, 320, 449
ApoI RAATTY 3 cut(s) 18, 94, 187
AseI ATTAAT 1 cut(s) 623
Asp700I GAANNNNTTC 2 cut(s) 22, 188
AspS9I GGNCC 2 cut(s) 360, 539
AsuHPI GGTGA 1 cut(s) 248
AvaII GGWCC 2 cut(s) 360, 539
Bbv12I GWGCWC 1 cut(s) 316
BbvCI CCTCAGC 1 cut(s) 453
BbvI GCAGC 4 cut(s) 55, 58, 307, 461
BccI CCATC 1 cut(s) 615
BceAI ACGGC 1 cut(s) 518
BciT130I CCWGG 3 cut(s) 105, 156, 543
BcoDI GTCTC 4 cut(s) 229, 267, 364, 557
BisI GCNGC 4 cut(s) 44, 47, 321, 450
BlsI GCNGC 4 cut(s) 45, 48, 322, 451
Bme1390I CCNGG 3 cut(s) 105, 156, 543
Bme18I GGWCC 2 cut(s) 360, 539
BmgT120I GGNCC 2 cut(s) 360, 539
BmiI GGNNCC 2 cut(s) 166, 362
BmrFI CCNGG 3 cut(s) 105, 156, 543
BmsI GCATC 3 cut(s) 311, 336, 478
Bpu10I CCTNAGC 1 cut(s) 453
BpuEI CTTGAG 1 cut(s) 97
BsaI GGTCTC 1 cut(s) 229
Bsc4I CCNNNNNNNGG 1 cut(s) 161
Bse1I ACTGG 2 cut(s) 295, 331
BseBI CCWGG 3 cut(s) 105, 156, 543
BseGI GGATG 1 cut(s) 607
BseLI CCNNNNNNNGG 1 cut(s) 161
BseMII CTCAG 2 cut(s) 320, 444
BseNI ACTGG 2 cut(s) 295, 331
BseXI GCAGC 4 cut(s) 55, 58, 307, 461
BshFI GGCC 1 cut(s) 465
BsiHKAI GWGCWC 1 cut(s) 316
BslFI GGGAC 1 cut(s) 346
BslI CCNNNNNNNGG 1 cut(s) 161
BsmAI GTCTC 4 cut(s) 229, 267, 364, 557
BsmFI GGGAC 1 cut(s) 346
BsnI GGCC 1 cut(s) 465
Bso31I GGTCTC 1 cut(s) 229
Bsp1286I GDGCHC 1 cut(s) 316
BspANI GGCC 1 cut(s) 465
BspCNI CTCAG 2 cut(s) 319, 445
BspLI GGNNCC 2 cut(s) 166, 362
BspQI GCTCTTC 1 cut(s) 237
BspTNI GGTCTC 1 cut(s) 229
BsrI ACTGG 2 cut(s) 295, 331
Bst2UI CCWGG 3 cut(s) 105, 156, 543
Bst4CI ACNGT 1 cut(s) 526
Bst6I CTCTTC 2 cut(s) 173, 237
BstDEI CTNAG 2 cut(s) 306, 453
BstF5I GGATG 1 cut(s) 607
BstMAI GTCTC 4 cut(s) 229, 267, 364, 557
BstMWI GCNNNNNNNGC 3 cut(s) 52, 211, 320
BstNI CCWGG 3 cut(s) 105, 156, 543
BstNSI RCATGY 3 cut(s) 334, 414, 604
BstSCI CCNGG 3 cut(s) 103, 154, 541
BstV1I GCAGC 4 cut(s) 55, 58, 307, 461
BstXI CCANNNNNNTGG 1 cut(s) 403
BsuRI GGCC 1 cut(s) 465
BtsCI GGATG 1 cut(s) 607
BtsIMutI CAGTG 2 cut(s) 314, 324
Cfr13I GGNCC 2 cut(s) 360, 539
CsiI ACCWGGT 2 cut(s) 154, 541
CviAII CATG 4 cut(s) 317, 331, 411, 601
CviJI RGCY 9 cut(s) 88, 120, 205, 247, 354, 439, 452, 465, 589
CviKI_1 RGCY 9 cut(s) 88, 120, 205, 247, 354, 439, 452, 465, 589
DdeI CTNAG 2 cut(s) 306, 453
Eam1104I CTCTTC 2 cut(s) 173, 237
EarI CTCTTC 2 cut(s) 173, 237
Eco31I GGTCTC 1 cut(s) 229
Eco47I GGWCC 2 cut(s) 360, 539
EcoO109I RGGNCCY 1 cut(s) 360
EcoRII CCWGG 3 cut(s) 103, 154, 541
FaeI CATG 4 cut(s) 320, 334, 414, 604
FaiI YATR 7 cut(s) 318, 332, 336, 357, 412, 548, 602
FalI AAGNNNNNCTT 4 cut(s) 7, 39, 152, 184
FaqI GGGAC 1 cut(s) 346
FatI CATG 4 cut(s) 316, 330, 410, 600
FblI GTMKAC 1 cut(s) 595
Fnu4HI GCNGC 4 cut(s) 44, 47, 321, 450
FokI GGATG 1 cut(s) 594
Fsp4HI GCNGC 4 cut(s) 44, 47, 321, 450
GluI GCNGC 4 cut(s) 44, 47, 321, 450
HaeIII GGCC 1 cut(s) 465
Hin1II CATG 4 cut(s) 320, 334, 414, 604
HinfI GANTC 2 cut(s) 31, 418
HphI GGTGA 1 cut(s) 248
Hpy166II GTNNAC 1 cut(s) 596
Hpy188I TCNGA 1 cut(s) 196
Hpy188III TCNNGA 1 cut(s) 226
Hpy8I GTNNAC 1 cut(s) 596
HpyAV CCTTC 2 cut(s) 110, 476
HpyCH4III ACNGT 1 cut(s) 526
HpyCH4V TGCA 4 cut(s) 338, 349, 414, 491
HpyF10VI GCNNNNNNNGC 3 cut(s) 52, 211, 320
HpyF3I CTNAG 2 cut(s) 306, 453
Hsp92II CATG 4 cut(s) 320, 334, 414, 604
LguI GCTCTTC 1 cut(s) 237
LmnI GCTCC 1 cut(s) 622
Lsp1109I GCAGC 4 cut(s) 55, 58, 307, 461
LweI GCATC 3 cut(s) 311, 336, 478
MabI ACCWGGT 2 cut(s) 154, 541
MaeIII GTNAC 1 cut(s) 406
MboII GAAGA 3 cut(s) 15, 190, 254
MhlI GDGCHC 1 cut(s) 316
MluCI AATT 3 cut(s) 18, 94, 187
MmeI TCCRAC 3 cut(s) 120, 494, 517
MnlI CCTC 4 cut(s) 174, 190, 373, 448
MroXI GAANNNNTTC 2 cut(s) 22, 188
MseI TTAA 8 cut(s) 14, 71, 84, 249, 278, 623, 641, 652
MslI CAYNNNNRTG 2 cut(s) 307, 329
MspA1I CMGCKG 1 cut(s) 452
MspR9I CCNGG 3 cut(s) 105, 156, 543
MvaI CCWGG 3 cut(s) 105, 156, 543
MwoI GCNNNNNNNGC 3 cut(s) 52, 211, 320
NlaIII CATG 4 cut(s) 320, 334, 414, 604
NlaIV GGNNCC 2 cut(s) 166, 362
NspI RCATGY 3 cut(s) 334, 414, 604
PciI ACATGT 1 cut(s) 600
PciSI GCTCTTC 1 cut(s) 237
PdmI GAANNNNTTC 2 cut(s) 22, 188
PfeI GAWTC 2 cut(s) 31, 418
PfoI TCCNGGA 1 cut(s) 103
PkrI GCNGC 4 cut(s) 45, 48, 322, 451
PpuMI RGGWCCY 1 cut(s) 360
PscI ACATGT 1 cut(s) 600
PshBI ATTAAT 1 cut(s) 623
Psp5II RGGWCCY 1 cut(s) 360
Psp6I CCWGG 3 cut(s) 103, 154, 541
PspGI CCWGG 3 cut(s) 103, 154, 541
PspN4I GGNNCC 2 cut(s) 166, 362
PspPI GGNCC 2 cut(s) 360, 539
PspPPI RGGWCCY 1 cut(s) 360
PvuII CAGCTG 1 cut(s) 452
RseI CAYNNNNRTG 2 cut(s) 307, 329
SapI GCTCTTC 1 cut(s) 237
SaqAI TTAA 8 cut(s) 14, 71, 84, 249, 278, 623, 641, 652
SatI GCNGC 4 cut(s) 44, 47, 321, 450
Sau96I GGNCC 2 cut(s) 360, 539
ScrFI CCNGG 3 cut(s) 105, 156, 543
SduI GDGCHC 1 cut(s) 316
SetI ASST 7 cut(s) 157, 249, 362, 441, 454, 507, 547
SexAI ACCWGGT 2 cut(s) 154, 541
SfaNI GCATC 3 cut(s) 311, 336, 478
SinI GGWCC 2 cut(s) 360, 539
SmiMI CAYNNNNRTG 2 cut(s) 307, 329
SmlI CTYRAG 1 cut(s) 76
SmoI CTYRAG 1 cut(s) 76
Sse9I AATT 3 cut(s) 18, 94, 187
StyD4I CCNGG 3 cut(s) 103, 154, 541
TaaI ACNGT 1 cut(s) 526
TaqI TCGA 1 cut(s) 227
TasI AATT 3 cut(s) 18, 94, 187
TfiI GAWTC 2 cut(s) 31, 418
Tru1I TTAA 8 cut(s) 14, 71, 84, 249, 278, 623, 641, 652
Tru9I TTAA 8 cut(s) 14, 71, 84, 249, 278, 623, 641, 652
TscAI CASTG 2 cut(s) 314, 331
TseI GCWGC 4 cut(s) 43, 46, 320, 449
TspDTI ATGAA 4 cut(s) 112, 255, 446, 641
TspRI CASTG 2 cut(s) 314, 331
VpaK11BI GGWCC 2 cut(s) 360, 539
VspI ATTAAT 1 cut(s) 623
XapI RAATTY 3 cut(s) 18, 94, 187
XceI RCATGY 3 cut(s) 334, 414, 604
XmiI GTMKAC 1 cut(s) 595
XmnI GAANNNNTTC 2 cut(s) 22, 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.