Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0007778

Physical Location & Seq

Genomic Coordinates Reverse (-)

4463980 .. 4467277

Gene Structure 3298 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00161800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGTTTGGTTCATTAAGAATTTCTTCCCAGAATCCAAGAAAGCAGCAGCAGAAGCAAGAAAGAGAATGGTTAAACTTGAGTTTTAAGCCAGAGAATTTCCTTCCAGGAGTTGTCATTGGCTTCATTCTTGGGTTGTTGTTGGATTTATCACAACCTGGTAAGGGTTCCTTGAAGTTGAAGAGGAAAAATTTCTCAGAGGGTAAGCCCCAACAGCGAAGTTTGGTCTCGACTAATGGTGATGAGGAGCTTAAAATGGTTCTTGTAGTTAGACGAGACTTGAAGATGACAACTGGAAAAATCGCATCTCAGTGTGCTCATGCTGCCACCGGCATGTATGCAGAACTGATGCAAAGGAATAAGCTGAAAGAAGCAGCTGAGGGCATTGGCCTTCCAACTTTTGTTGTCGCTGATGCAGGGCGAACACAGGTTGTGAGTGGGTCAAAGACAGTTCTTGCCGTTGGACCTGGACCAAAAGAATTGGTAGATTCGGTGACAGGGAAACAGGGTCTCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

PTH2

Protein Analysis

171

Amino Acids

18.59

Weight (kDa)

9.95

Isoelectric Point (pI)

32.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTH2	PF01981	83 - 120	9.8e-13	Peptidyl-tRNA hydrolase PTH2
PTH2	PF01981	120 - 168	6.6e-13	Peptidyl-tRNA hydrolase PTH2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32900 AT4G32900 AT4G32900 AT4G32900
fragaria_vesca	FvH4_2g35470 FvH4_2g35470
malus_domestica	MD15G1092700.v1.1
prunus_persica	Prupe.1G447600_v2.0.a1 Prupe.1G447600_v2.0.a1 Prupe.1G447600_v2.0.a1 Prupe.1G447600_v2.0.a1 Prupe.1G447600_v2.0.a1 Prupe.1G447600_v2.0.a1 Prupe.1G447600_v2.0.a1
pyrus_communis	pycom15g08590
rosa_chinensis	RchiOBHm_Chr6g0306411
rosa_laevigata	RLG00000010799
rosa_multiflora	Rmu_sc0002971.1_g000025
rosa_roxburghii	Rroxscaffold_7G00161800
rosa_rugosa	Rorug06G0348900 Rorug06G0349000
rosa_samantha	Rh6AG461400 Rh6BG439700
rosa_wichuraiana	Rw6G040210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	3 cut(s)	18, 94, 187
AfiI	CCNNNNNNNGG	1 cut(s)	161
AgsI	TTSAA	3 cut(s)	172, 178, 280
AjnI	CCWGG	3 cut(s)	103, 154, 463
AluBI	AGCT	3 cut(s)	247, 361, 374
AluI	AGCT	3 cut(s)	247, 361, 374
Alw21I	GWGCWC	1 cut(s)	316
Alw26I	GTCTC	3 cut(s)	229, 267, 512
AoxI	GGCC	1 cut(s)	385
ApeKI	GCWGC	4 cut(s)	43, 46, 320, 371
ApoI	RAATTY	3 cut(s)	18, 94, 187
Asp700I	GAANNNNTTC	2 cut(s)	22, 188
AspS9I	GGNCC	2 cut(s)	461, 467
AsuHPI	GGTGA	2 cut(s)	248, 502
AvaII	GGWCC	2 cut(s)	461, 467
Bbv12I	GWGCWC	1 cut(s)	316
BbvCI	CCTCAGC	1 cut(s)	375
BbvI	GCAGC	4 cut(s)	55, 58, 307, 383
BceAI	ACGGC	1 cut(s)	440
BciT130I	CCWGG	3 cut(s)	105, 156, 465
BcoDI	GTCTC	3 cut(s)	229, 267, 512
BisI	GCNGC	4 cut(s)	44, 47, 321, 372
BlsI	GCNGC	4 cut(s)	45, 48, 322, 373
Bme1390I	CCNGG	3 cut(s)	105, 156, 465
Bme18I	GGWCC	2 cut(s)	461, 467
BmgT120I	GGNCC	2 cut(s)	461, 467
BmiI	GGNNCC	1 cut(s)	166
BmrFI	CCNGG	3 cut(s)	105, 156, 465
BmsI	GCATC	3 cut(s)	311, 336, 400
Bpu10I	CCTNAGC	1 cut(s)	375
BpuEI	CTTGAG	1 cut(s)	97
BsaI	GGTCTC	2 cut(s)	229, 512
BsaXI	ACNNNNNCTCC	1 cut(s)	492
Bsc4I	CCNNNNNNNGG	1 cut(s)	161
Bse118I	RCCGGY	1 cut(s)	326
Bse1I	ACTGG	1 cut(s)	295
BseBI	CCWGG	3 cut(s)	105, 156, 465
BseLI	CCNNNNNNNGG	1 cut(s)	161
BseMII	CTCAG	3 cut(s)	207, 320, 366
BseNI	ACTGG	1 cut(s)	295
BseRI	GAGGAG	1 cut(s)	257
BseXI	GCAGC	4 cut(s)	55, 58, 307, 383
BshFI	GGCC	1 cut(s)	387
BsiHKAI	GWGCWC	1 cut(s)	316
BsiSI	CCGG	1 cut(s)	327
BslI	CCNNNNNNNGG	1 cut(s)	161
BsmAI	GTCTC	3 cut(s)	229, 267, 512
BsnI	GGCC	1 cut(s)	387
Bso31I	GGTCTC	2 cut(s)	229, 512
Bsp1286I	GDGCHC	1 cut(s)	316
BspANI	GGCC	1 cut(s)	387
BspCNI	CTCAG	3 cut(s)	206, 319, 367
BspLI	GGNNCC	1 cut(s)	166
BspTNI	GGTCTC	2 cut(s)	229, 512
BsrFI	RCCGGY	1 cut(s)	326
BsrI	ACTGG	1 cut(s)	295
BssAI	RCCGGY	1 cut(s)	326
Bst2UI	CCWGG	3 cut(s)	105, 156, 465
Bst4CI	ACNGT	1 cut(s)	448
Bst6I	CTCTTC	1 cut(s)	173
BstDEI	CTNAG	3 cut(s)	193, 306, 375
BstMAI	GTCTC	3 cut(s)	229, 267, 512
BstMWI	GCNNNNNNNGC	3 cut(s)	52, 211, 320
BstNI	CCWGG	3 cut(s)	105, 156, 465
BstNSI	RCATGY	1 cut(s)	334
BstSCI	CCNGG	3 cut(s)	103, 154, 463
BstV1I	GCAGC	4 cut(s)	55, 58, 307, 383
BsuRI	GGCC	1 cut(s)	387
BtsIMutI	CAGTG	1 cut(s)	314
Cfr10I	RCCGGY	1 cut(s)	326
Cfr13I	GGNCC	2 cut(s)	461, 467
CsiI	ACCWGGT	1 cut(s)	154
CviAII	CATG	2 cut(s)	317, 331
CviJI	RGCY	7 cut(s)	88, 120, 205, 247, 361, 374, 387
CviKI_1	RGCY	7 cut(s)	88, 120, 205, 247, 361, 374, 387
DdeI	CTNAG	3 cut(s)	193, 306, 375
Eam1104I	CTCTTC	1 cut(s)	173
EarI	CTCTTC	1 cut(s)	173
Eco31I	GGTCTC	2 cut(s)	229, 512
Eco47I	GGWCC	2 cut(s)	461, 467
EcoRII	CCWGG	3 cut(s)	103, 154, 463
FaeI	CATG	2 cut(s)	320, 334
FaiI	YATR	3 cut(s)	318, 332, 336
FalI	AAGNNNNNCTT	4 cut(s)	7, 39, 152, 184
FatI	CATG	2 cut(s)	316, 330
Fnu4HI	GCNGC	4 cut(s)	44, 47, 321, 372
Fsp4HI	GCNGC	4 cut(s)	44, 47, 321, 372
GluI	GCNGC	4 cut(s)	44, 47, 321, 372
HaeIII	GGCC	1 cut(s)	387
HapII	CCGG	1 cut(s)	327
Hin1II	CATG	2 cut(s)	320, 334
HinfI	GANTC	2 cut(s)	31, 485
HpaII	CCGG	1 cut(s)	327
HphI	GGTGA	2 cut(s)	248, 502
Hpy188I	TCNGA	1 cut(s)	196
Hpy188III	TCNNGA	1 cut(s)	226
HpyAV	CCTTC	2 cut(s)	110, 398
HpyCH4III	ACNGT	1 cut(s)	448
HpyCH4V	TGCA	3 cut(s)	338, 349, 413
HpyF10VI	GCNNNNNNNGC	3 cut(s)	52, 211, 320
HpyF3I	CTNAG	3 cut(s)	193, 306, 375
Hsp92II	CATG	2 cut(s)	320, 334
LmnI	GCTCC	1 cut(s)	244
Lsp1109I	GCAGC	4 cut(s)	55, 58, 307, 383
LweI	GCATC	3 cut(s)	311, 336, 400
MabI	ACCWGGT	1 cut(s)	154
MaeIII	GTNAC	1 cut(s)	490
MboII	GAAGA	3 cut(s)	15, 190, 292
MhlI	GDGCHC	1 cut(s)	316
MluCI	AATT	4 cut(s)	18, 94, 187, 476
MmeI	TCCRAC	3 cut(s)	120, 416, 439
MnlI	CCTC	4 cut(s)	174, 190, 235, 370
MroXI	GAANNNNTTC	2 cut(s)	22, 188
MseI	TTAA	4 cut(s)	14, 71, 84, 249
MslI	CAYNNNNRTG	2 cut(s)	307, 329
MspA1I	CMGCKG	1 cut(s)	374
MspI	CCGG	1 cut(s)	327
MspR9I	CCNGG	3 cut(s)	105, 156, 465
MvaI	CCWGG	3 cut(s)	105, 156, 465
MwoI	GCNNNNNNNGC	3 cut(s)	52, 211, 320
NlaIII	CATG	2 cut(s)	320, 334
NlaIV	GGNNCC	1 cut(s)	166
NmuCI	GTSAC	1 cut(s)	490
NspI	RCATGY	1 cut(s)	334
PdmI	GAANNNNTTC	2 cut(s)	22, 188
PfeI	GAWTC	2 cut(s)	31, 485
PfoI	TCCNGGA	1 cut(s)	103
PkrI	GCNGC	4 cut(s)	45, 48, 322, 373
Psp6I	CCWGG	3 cut(s)	103, 154, 463
PspGI	CCWGG	3 cut(s)	103, 154, 463
PspN4I	GGNNCC	1 cut(s)	166
PspPI	GGNCC	2 cut(s)	461, 467
PvuII	CAGCTG	1 cut(s)	374
RseI	CAYNNNNRTG	2 cut(s)	307, 329
SaqAI	TTAA	4 cut(s)	14, 71, 84, 249
SatI	GCNGC	4 cut(s)	44, 47, 321, 372
Sau96I	GGNCC	2 cut(s)	461, 467
ScrFI	CCNGG	3 cut(s)	105, 156, 465
SduI	GDGCHC	1 cut(s)	316
SetI	ASST	6 cut(s)	157, 249, 363, 376, 429, 466
SexAI	ACCWGGT	1 cut(s)	154
SfaNI	GCATC	3 cut(s)	311, 336, 400
SinI	GGWCC	2 cut(s)	461, 467
SmiMI	CAYNNNNRTG	2 cut(s)	307, 329
SmlI	CTYRAG	1 cut(s)	76
SmoI	CTYRAG	1 cut(s)	76
Sse9I	AATT	4 cut(s)	18, 94, 187, 476
StyD4I	CCNGG	3 cut(s)	103, 154, 463
TaaI	ACNGT	1 cut(s)	448
TaqI	TCGA	1 cut(s)	227
TasI	AATT	4 cut(s)	18, 94, 187, 476
TfiI	GAWTC	2 cut(s)	31, 485
Tru1I	TTAA	4 cut(s)	14, 71, 84, 249
Tru9I	TTAA	4 cut(s)	14, 71, 84, 249
TscAI	CASTG	1 cut(s)	314
TseFI	GTSAC	1 cut(s)	490
TseI	GCWGC	4 cut(s)	43, 46, 320, 371
Tsp45I	GTSAC	1 cut(s)	490
TspDTI	ATGAA	1 cut(s)	112
TspRI	CASTG	1 cut(s)	314
VpaK11BI	GGWCC	2 cut(s)	461, 467
XapI	RAATTY	3 cut(s)	18, 94, 187
XceI	RCATGY	1 cut(s)	334
XmnI	GAANNNNTTC	2 cut(s)	22, 188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.