pycom15g08920

La protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Reverse (-)
5741685 .. 5744427
2743 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1380 bp
ATGGCGACGCCTTCTTTGGACGAAGAAACCTCGAAGAAAGTGCTGCGCCAGGTCGAGTTTTACTTCAGCGACAGCAATCTTCCGAGGGACGATTTTCTCAGTAAAACGATTAGCGAAAGCGAAGATGGACTGGTAAGCTTGGCTCTGATATGCTCGTTTACACGGATGAGAAATCATCTCAATTTGGGGGATGTGAAGCCCGATACTGTCCCCGAAGCTAGCGTAAAGGCCGTTGCCGAAACGCTTCGACAATCTGCCACCCTAAAGCTTTCGGAAGACGGGACAAAGGTTGGTAGGGCTAATGAAATGCTGAAGCCGGAGGAGGTGATAGAGCAGGTAGACAACAGAACAATAGCTGCTTCGCCATTTGCGTTTGATGTGAAGCTTGAAGATGTCGAAACTTTTTTTAGGCAATTTGCCAAGGTTAACAGTGTGAGGCTGCCTCGTCATGTTGCTGACAAAAAGCTACTATGTGGCACTGCTTTGGTTGAGTTTTCAACTGAGGAAGAAGCCAATAAGATTTTGGAGCAAGCTTTGGAATCCGCAGGTGTTAAGTTAGAATTGAAGCCGAAGAAGGATTTTGATACCGATAGAGAAAGAGAGGTAAAGGAATATGAGGCTCGACCTGTTACAAGTACAAAGGGAAAGAATAACACGAAAGCAGAGGCTGACTACCCCAAGGGTTTAATTGTTGCATTCACGTTAAAGAGCTTGTCTGGTAAAGGTCCTGCAGTGGTTAGTAGTACACCTGACAATGCCAATGATAGTACAAATGGTAGTACCGAAGAAACAGAAAAGAAAGTGTCAGAAGATGTTAACGGGGCTAATGAAGATGTAGAAGTTTCTGGAGAGGAAGTTAAGGATAAGGCAAATTCTGATGAGAAGAATAGTTTGGATGAAGTGAAGGAAGCTGGAGATGGGGAAAAGCCTTCTGAAGGTTCCGTTCCAAAGGGTGGAGAGAAAGAAGAAAGATTGAATGCTGCTGCATACAAAGACAACATGGATGTTGTTTTGCGTGAGGATTTGAAGGCTGTCTTTGAAAAGTTTGGCACCGTAAAGTACATTGATTTCAAGATCGGAGAAGAATCAGGATACATTCGGTTTGAAGAACCTGAAGCAGCTCAGAAAGCACGTGCAGCTGCAGTCTTGACCGAGCAAGGAGGTCTGGCTGTGAAGAATTTCATCGCTACTTTGGAACCAGTCAGCGGTGAGGCTGAAAAGGAGTACTGGAACCTCTTCCGTGGCAACCAAGAAAAGTTCCGCGATAGTAAGAACCACCGCGGAGGAAGGGGAGGCAAGCACCATAGGGGTGGGTGGAAAGGCCGCTCAAGAGACAATGATAATTCCGGGGGTCGCACGAATAAAGTCCGCAGATTTTGA

Protein Analysis

460

Amino Acids

50.77

Weight (kDa)

5.28

Isoelectric Point (pI)

32.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
La PF05383 15 - 66 7.3e-19 La domain
RRM_1 PF00076 124 - 177 1.8e-07 RNA recognition motif
RRM_3 PF08777 337 - 429 2e-21 RNA binding motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011399)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 536
Acc36I ACCTGC 2 cut(s) 325, 536
AccB1I GGYRCC 1 cut(s) 1049
AccB7I CCANNNNNTGG 1 cut(s) 953
AccBSI CCGCTC 1 cut(s) 1326
AccI GTMKAC 1 cut(s) 339
AccII CGCG 2 cut(s) 1263, 1281
AciI CCGC 7 cut(s) 543, 1206, 1261, 1279, 1281, 1324, 1369
AcsI RAATTY 2 cut(s) 871, 1177
AcuI CTGAAG 4 cut(s) 49, 332, 954, 1134
AcvI CACGTG 1 cut(s) 1133
AcyI GRCGYC 1 cut(s) 8
AfaI GTAC 6 cut(s) 637, 745, 769, 781, 1061, 1226
AfiI CCNNNNNNNGG 3 cut(s) 935, 953, 1205
AgsI TTSAA 8 cut(s) 389, 498, 565, 976, 1027, 1040, 1072, 1106
AjnI CCWGG 1 cut(s) 48
AjuI GAANNNNNNNTTGG 2 cut(s) 875, 907
Alw26I GTCTC 1 cut(s) 1326
AlwNI CAGNNNCTG 1 cut(s) 668
AoxI GGCC 2 cut(s) 228, 1321
ApeKI GCWGC 8 cut(s) 43, 356, 439, 980, 983, 1118, 1136, 1139
ApoI RAATTY 2 cut(s) 871, 1177
ArsI GACNNNNNNTTYG 1 cut(s) 30
Asp700I GAANNNNTTC 3 cut(s) 243, 1178, 1235
AspLEI GCGC 1 cut(s) 48
AspS9I GGNCC 1 cut(s) 725
AsuC2I CCSGG 1 cut(s) 1348
AsuHPI GGTGA 2 cut(s) 337, 1220
AsuNHI GCTAGC 1 cut(s) 218
AvaII GGWCC 1 cut(s) 725
BanI GGYRCC 1 cut(s) 1049
BbrPI CACGTG 1 cut(s) 1133
BbsI GAAGAC 1 cut(s) 282
BbvI GCAGC 8 cut(s) 30, 343, 426, 967, 970, 1126, 1130, 1148
BccI CCATC 2 cut(s) 119, 911
BceAI ACGGC 1 cut(s) 215
BcgI CGANNNNNNTGC 2 cut(s) 22, 56
BciT130I CCWGG 1 cut(s) 50
BciVI GTATCC 1 cut(s) 1085
BcnI CCSGG 1 cut(s) 1348
BcoDI GTCTC 1 cut(s) 1326
BfaI CTAG 1 cut(s) 219
BfmI CTRYAG 2 cut(s) 729, 1140
BfuAI ACCTGC 2 cut(s) 325, 536
BfuI GTATCC 1 cut(s) 1085
BisI GCNGC 9 cut(s) 44, 357, 440, 981, 984, 1119, 1137, 1140, 1324
BlsI GCNGC 9 cut(s) 45, 358, 441, 982, 985, 1120, 1138, 1141, 1325
BmcAI AGTACT 1 cut(s) 1226
Bme1390I CCNGG 2 cut(s) 50, 1348
Bme18I GGWCC 1 cut(s) 725
BmgT120I GGNCC 1 cut(s) 725
BmiI GGNNCC 4 cut(s) 940, 1051, 1197, 1232
BmrFI CCNGG 2 cut(s) 50, 1348
BmtI GCTAGC 1 cut(s) 222
BpiI GAAGAC 1 cut(s) 282
BplI GAGNNNNNCTC 2 cut(s) 427, 459
BpmI CTGGAG 2 cut(s) 867, 933
BpuEI CTTGAG 1 cut(s) 1312
BpuMI CCSGG 1 cut(s) 1348
BsaAI YACGTR 1 cut(s) 1133
BsaHI GRCGYC 1 cut(s) 8
BsaJI CCNNGG 6 cut(s) 83, 420, 678, 1240, 1279, 1347
BsaXI ACNNNNNCTCC 2 cut(s) 840, 870
Bsc4I CCNNNNNNNGG 3 cut(s) 935, 953, 1205
Bse1I ACTGG 3 cut(s) 135, 1199, 1232
BseBI CCWGG 1 cut(s) 50
BseDI CCNNGG 6 cut(s) 83, 420, 678, 1240, 1279, 1347
BseGI GGATG 4 cut(s) 171, 196, 901, 1009
BseLI CCNNNNNNNGG 3 cut(s) 935, 953, 1205
BseMII CTCAG 3 cut(s) 112, 492, 1136
BseNI ACTGG 3 cut(s) 135, 1199, 1232
BseRI GAGGAG 1 cut(s) 335
BseXI GCAGC 8 cut(s) 30, 343, 426, 967, 970, 1126, 1130, 1148
BsgI GTGCAG 1 cut(s) 1155
Bsh1236I CGCG 2 cut(s) 1263, 1281
BshFI GGCC 2 cut(s) 230, 1323
BshNI GGYRCC 1 cut(s) 1049
BsiSI CCGG 2 cut(s) 317, 1347
BslFI GGGAC 3 cut(s) 101, 194, 295
BslI CCNNNNNNNGG 3 cut(s) 935, 953, 1205
BsmAI GTCTC 1 cut(s) 1326
BsmFI GGGAC 3 cut(s) 101, 194, 295
BsmI GAATGC 2 cut(s) 695, 982
BsnI GGCC 2 cut(s) 230, 1323
Bsp143I GATC 1 cut(s) 1074
BspACI CCGC 7 cut(s) 543, 1206, 1261, 1279, 1281, 1324, 1369
BspANI GGCC 2 cut(s) 230, 1323
BspCNI CTCAG 3 cut(s) 111, 493, 1135
BspFNI CGCG 2 cut(s) 1263, 1281
BspLI GGNNCC 4 cut(s) 940, 1051, 1197, 1232
BspMAI CTGCAG 2 cut(s) 733, 1144
BspMI ACCTGC 2 cut(s) 325, 536
BspOI GCTAGC 1 cut(s) 222
BspT107I GGYRCC 1 cut(s) 1049
BsrBI CCGCTC 1 cut(s) 1326
BsrI ACTGG 3 cut(s) 135, 1199, 1232
BssECI CCNNGG 6 cut(s) 83, 420, 678, 1240, 1279, 1347
BssMI GATC 1 cut(s) 1074
BssNI GRCGYC 1 cut(s) 8
BssT1I CCWWGG 2 cut(s) 420, 678
Bst2UI CCWGG 1 cut(s) 50
Bst4CI ACNGT 3 cut(s) 208, 431, 1054
Bst6I CTCTTC 1 cut(s) 1241
BstACI GRCGYC 1 cut(s) 8
BstBAI YACGTR 1 cut(s) 1133
BstC8I GCNNGC 3 cut(s) 220, 531, 1298
BstDEI CTNAG 3 cut(s) 98, 501, 1122
BstDSI CCRYGG 2 cut(s) 1240, 1279
BstENI CCTNNNNNAGG 1 cut(s) 933
BstF5I GGATG 4 cut(s) 171, 196, 901, 1009
BstFNI CGCG 2 cut(s) 1263, 1281
BstHHI GCGC 1 cut(s) 48
BstKTI GATC 1 cut(s) 1077
BstMAI GTCTC 1 cut(s) 1326
BstMBI GATC 1 cut(s) 1074
BstMWI GCNNNNNNNGC 2 cut(s) 1127, 1136
BstNI CCWGG 1 cut(s) 50
BstSCI CCNGG 2 cut(s) 48, 1346
BstSFI CTRYAG 2 cut(s) 729, 1140
BstUI CGCG 2 cut(s) 1263, 1281
BstV1I GCAGC 8 cut(s) 30, 343, 426, 967, 970, 1126, 1130, 1148
BstV2I GAAGAC 1 cut(s) 282
BstXI CCANNNNNNTGG 1 cut(s) 1310
BsuI GTATCC 1 cut(s) 1085
BsuRI GGCC 2 cut(s) 230, 1323
BtgI CCRYGG 2 cut(s) 1240, 1279
BtgZI GCGATG 1 cut(s) 1168
BtsCI GGATG 4 cut(s) 171, 196, 901, 1009
BtsI GCAGTG 2 cut(s) 477, 738
BtsIMutI CAGTG 3 cut(s) 436, 477, 738
BveI ACCTGC 2 cut(s) 325, 536
Cac8I GCNNGC 3 cut(s) 220, 531, 1298
CaiI CAGNNNCTG 1 cut(s) 668
CfoI GCGC 1 cut(s) 48
Cfr13I GGNCC 1 cut(s) 725
Cfr42I CCGCGG 1 cut(s) 1282
CseI GACGC 1 cut(s) 16
Csp6I GTAC 6 cut(s) 636, 744, 768, 780, 1060, 1225
CviAII CATG 2 cut(s) 449, 1000
CviQI GTAC 6 cut(s) 636, 744, 768, 780, 1060, 1225
DdeI CTNAG 3 cut(s) 98, 501, 1122
DpnI GATC 1 cut(s) 1076
DpnII GATC 1 cut(s) 1074
Eam1104I CTCTTC 1 cut(s) 1241
EarI CTCTTC 1 cut(s) 1241
Eco130I CCWWGG 2 cut(s) 420, 678
Eco47I GGWCC 1 cut(s) 725
Eco57I CTGAAG 4 cut(s) 49, 332, 954, 1134
Eco72I CACGTG 1 cut(s) 1133
EcoNI CCTNNNNNAGG 1 cut(s) 933
EcoO109I RGGNCCY 1 cut(s) 725
EcoRII CCWGG 1 cut(s) 48
EcoT14I CCWWGG 2 cut(s) 420, 678
ErhI CCWWGG 2 cut(s) 420, 678
FaeI CATG 2 cut(s) 452, 1003
FaiI YATR 7 cut(s) 151, 450, 472, 615, 988, 1001, 1305
FalI AAGNNNNNCTT 2 cut(s) 1019, 1051
FaqI GGGAC 3 cut(s) 101, 194, 295
FatI CATG 2 cut(s) 448, 999
FblI GTMKAC 1 cut(s) 339
Fnu4HI GCNGC 9 cut(s) 44, 357, 440, 981, 984, 1119, 1137, 1140, 1324
FokI GGATG 4 cut(s) 178, 203, 908, 1016
Fsp4HI GCNGC 9 cut(s) 44, 357, 440, 981, 984, 1119, 1137, 1140, 1324
FspBI CTAG 1 cut(s) 219
GlaI GCGC 1 cut(s) 47
GluI GCNGC 9 cut(s) 44, 357, 440, 981, 984, 1119, 1137, 1140, 1324
GsuI CTGGAG 2 cut(s) 867, 933
HaeIII GGCC 2 cut(s) 230, 1323
HapII CCGG 2 cut(s) 317, 1347
HgaI GACGC 1 cut(s) 16
HhaI GCGC 1 cut(s) 48
Hin1I GRCGYC 1 cut(s) 8
Hin1II CATG 2 cut(s) 452, 1003
Hin6I GCGC 1 cut(s) 46
HinP1I GCGC 1 cut(s) 46
HincII GTYRAC 2 cut(s) 427, 817
HindII GTYRAC 2 cut(s) 427, 817
HindIII AAGCTT 4 cut(s) 136, 266, 383, 531
HinfI GANTC 2 cut(s) 539, 1085
HpaI GTTAAC 2 cut(s) 427, 817
HpaII CCGG 2 cut(s) 317, 1347
HphI GGTGA 2 cut(s) 337, 1220
Hpy166II GTNNAC 5 cut(s) 159, 340, 427, 746, 817
Hpy188I TCNGA 8 cut(s) 84, 147, 274, 808, 877, 934, 1079, 1125
Hpy188III TCNNGA 5 cut(s) 846, 1072, 1089, 1147, 1329
Hpy8I GTNNAC 5 cut(s) 159, 340, 427, 746, 817
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 7 cut(s) 21, 568, 898, 929, 939, 1021, 1281
HpyCH4III ACNGT 3 cut(s) 208, 431, 1054
HpyCH4IV ACGT 2 cut(s) 701, 1132
HpyCH4V TGCA 5 cut(s) 695, 731, 986, 1136, 1142
HpyF10VI GCNNNNNNNGC 2 cut(s) 1127, 1136
HpyF3I CTNAG 3 cut(s) 98, 501, 1122
HpySE526I ACGT 2 cut(s) 701, 1132
Hsp92I GRCGYC 1 cut(s) 8
Hsp92II CATG 2 cut(s) 452, 1003
HspAI GCGC 1 cut(s) 46
KspAI GTTAAC 2 cut(s) 427, 817
KspI CCGCGG 1 cut(s) 1282
Kzo9I GATC 1 cut(s) 1074
LmnI GCTCC 1 cut(s) 526
Lsp1109I GCAGC 8 cut(s) 30, 343, 426, 967, 970, 1126, 1130, 1148
MaeI CTAG 1 cut(s) 219
MaeII ACGT 2 cut(s) 701, 1132
MaeIII GTNAC 1 cut(s) 628
MalI GATC 1 cut(s) 1076
MbiI CCGCTC 1 cut(s) 1326
MboI GATC 1 cut(s) 1074
MluCI AATT 7 cut(s) 181, 413, 560, 687, 871, 1177, 1342
MroXI GAANNNNTTC 3 cut(s) 243, 1178, 1235
MseI TTAA 6 cut(s) 426, 552, 686, 704, 816, 858
MslI CAYNNNNRTG 1 cut(s) 1308
MspA1I CMGCKG 3 cut(s) 1139, 1206, 1281
MspI CCGG 2 cut(s) 317, 1347
MspR9I CCNGG 2 cut(s) 50, 1348
Mva1269I GAATGC 2 cut(s) 695, 982
MvaI CCWGG 1 cut(s) 50
MvnI CGCG 2 cut(s) 1263, 1281
MwoI GCNNNNNNNGC 2 cut(s) 1127, 1136
NciI CCSGG 1 cut(s) 1348
NdeII GATC 1 cut(s) 1074
NheI GCTAGC 1 cut(s) 218
NlaIII CATG 2 cut(s) 452, 1003
NlaIV GGNNCC 4 cut(s) 940, 1051, 1197, 1232
PaqCI CACCTGC 1 cut(s) 536
PcsI WCGNNNNNNNCGW 1 cut(s) 368
PctI GAATGC 2 cut(s) 695, 982
PdmI GAANNNNTTC 3 cut(s) 243, 1178, 1235
PfeI GAWTC 2 cut(s) 539, 1085
PflMI CCANNNNNTGG 1 cut(s) 953
PkrI GCNGC 9 cut(s) 45, 358, 441, 982, 985, 1120, 1138, 1141, 1325
PmaCI CACGTG 1 cut(s) 1133
PmlI CACGTG 1 cut(s) 1133
Ppu21I YACGTR 1 cut(s) 1133
PpuMI RGGWCCY 1 cut(s) 725
Psp5II RGGWCCY 1 cut(s) 725
Psp6I CCWGG 1 cut(s) 48
PspCI CACGTG 1 cut(s) 1133
PspGI CCWGG 1 cut(s) 48
PspN4I GGNNCC 4 cut(s) 940, 1051, 1197, 1232
PspPI GGNCC 1 cut(s) 725
PspPPI RGGWCCY 1 cut(s) 725
PstI CTGCAG 2 cut(s) 733, 1144
PstNI CAGNNNCTG 1 cut(s) 668
PvuII CAGCTG 1 cut(s) 1139
RsaI GTAC 6 cut(s) 637, 745, 769, 781, 1061, 1226
RsaNI GTAC 6 cut(s) 636, 744, 768, 780, 1060, 1225
RseI CAYNNNNRTG 1 cut(s) 1308
SacII CCGCGG 1 cut(s) 1282
SaqAI TTAA 6 cut(s) 426, 552, 686, 704, 816, 858
SatI GCNGC 9 cut(s) 44, 357, 440, 981, 984, 1119, 1137, 1140, 1324
Sau3AI GATC 1 cut(s) 1074
Sau96I GGNCC 1 cut(s) 725
ScaI AGTACT 1 cut(s) 1226
ScrFI CCNGG 2 cut(s) 50, 1348
SfcI CTRYAG 2 cut(s) 729, 1140
Sfr303I CCGCGG 1 cut(s) 1282
SgrBI CCGCGG 1 cut(s) 1282
SinI GGWCC 1 cut(s) 725
SmiMI CAYNNNNRTG 1 cut(s) 1308
SmlI CTYRAG 1 cut(s) 1327
SmoI CTYRAG 1 cut(s) 1327
Sse9I AATT 7 cut(s) 181, 413, 560, 687, 871, 1177, 1342
SsiI CCGC 7 cut(s) 543, 1206, 1261, 1279, 1281, 1324, 1369
SspMI CTAG 1 cut(s) 219
StyD4I CCNGG 2 cut(s) 48, 1346
StyI CCWWGG 2 cut(s) 420, 678
TaaI ACNGT 3 cut(s) 208, 431, 1054
TaiI ACGT 2 cut(s) 704, 1135
TaqI TCGA 5 cut(s) 32, 54, 247, 396, 622
TaqII GACCGA 1 cut(s) 1166
TasI AATT 7 cut(s) 181, 413, 560, 687, 871, 1177, 1342
TatI WGTACW 5 cut(s) 635, 743, 767, 1059, 1224
TauI GCSGC 1 cut(s) 1326
TfiI GAWTC 2 cut(s) 539, 1085
Tru1I TTAA 6 cut(s) 426, 552, 686, 704, 816, 858
Tru9I TTAA 6 cut(s) 426, 552, 686, 704, 816, 858
TscAI CASTG 3 cut(s) 436, 484, 738
TseI GCWGC 8 cut(s) 43, 356, 439, 980, 983, 1118, 1136, 1139
TspDTI ATGAA 4 cut(s) 318, 843, 912, 1171
TspGWI ACGGA 3 cut(s) 178, 931, 1229
TspRI CASTG 3 cut(s) 436, 484, 738
Van91I CCANNNNNTGG 1 cut(s) 953
VpaK11BI GGWCC 1 cut(s) 725
XagI CCTNNNNNAGG 1 cut(s) 933
XapI RAATTY 2 cut(s) 871, 1177
XcmI CCANNNNNNNNNTGG 1 cut(s) 520
XmiI GTMKAC 1 cut(s) 339
XmnI GAANNNNTTC 3 cut(s) 243, 1178, 1235
XspI CTAG 1 cut(s) 219
ZrmI AGTACT 1 cut(s) 1226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.