Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0016092

Physical Location & Seq

Genomic Coordinates Forward (+)

7470141 .. 7471879

Gene Structure 1739 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGCTTTCGCTTCGGCGCTCAACACACCCAAGGGGCTTCACTTTCTACCGTTGCCGTCTTCCTTCAGAGAACGGCCACCCACCAATCTGGTACTGCCACGTCACTTTCCGACTCGATTTTCGTCCACGCTCGCCTTGGCTCGCCGCCGGAACCACCGCGCCGAAGTCGCGCCCTCCAAAACGAAGATGAAGAAGAAAAGTTTGGGGAAGAAGGAGGTAAAGGAGGCGGAGGTGGAGGAGGAGGATGTGGATGAGGATGCGATAGATGCGCTGTTTAGGCTGCTGGAGGAGGATCTCAAAAACGACGACGCATCGTTTGACGAGGAGGATTTAACGGAAGAAGAGCTGTCGAAGCTCGAACAGGAAGTTGCAGAGGCACTGGGAATTGACGGTGACGATGATGTTGATGACGATGACGACGATGACGATGATGAAGAGGAGGATGATGACGACGACGACTTTGTTGTTGAGAGCTATGCCGAAGAAGAAGAAGAAGAAGATGATGATGATGATGATGATGAAGATGAGGAGGAGGAGGAAGAGGAAAGTCCGGTGAAGTTGAAGACTTGGCAGCTGCGGAGATTGGCGGCGGCTTTGAAAGTTGGTCGGCGCAAAACCAGCATAAAAACTCTTGCAGCTGAGCTTTGTCTTGACAGGGCTGTTGTTCTCGAATTGCTTCGTGAACCCCCTCCAAGTCTTTTGATGATGTGTGCTGCTTTACCTGATGAACCTGCTACAGTGATATCTGTGTCCCAAACAAAGTCTGTAGAAGCTGTTATGGAAACAACTCGAGAAACCGAAACGGCTACAGATTCTGTAAAGCTTGAACCTGCAGTGAAGGTGCCCGTTCATGTCAGGCAACAAAAGTTTTCTGCTCAAAAGAGACTGAAGAAAGCGCAAGTTGAAACCCTTGAAAGCGTTTATAGAAAAACAAAGCGGCCCACTAATGCAATGGTCAGCAGCATAGTGCATGTGACAAACCTTCCCCGCAAAAGAGTTGTGAAATGGTTTGAAGACAAACGTTCTGAGGAAGGCGTTCCAGATTCTCGGGTTCCCTATCAACGGCCTGCCCCTAATACTGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002229 GO:0002239 GO:0002376 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009682 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009753 GO:0009755 GO:0009787 GO:0009867 GO:0009889 GO:0009966 GO:0009987 GO:0010033 GO:0010035 GO:0010118 GO:0010468 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0031347 GO:0032870 GO:0032879 GO:0033993 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045087 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071395 GO:0071396 GO:0071495 GO:0080090 GO:0080134 GO:0097305 GO:0097306 GO:0098542 GO:0140110 GO:1901419 GO:1901700 GO:1901701 GO:1903506 GO:1905957 GO:2000022 GO:2000071 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4666 Homeobox

Protein Analysis

362

Amino Acids

40.97

Weight (kDa)

4.51

Isoelectric Point (pI)

63.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	294 - 342	9.8e-07	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11270
fragaria_vesca	FvH4_2g29450
malus_domestica	MD08G1147000.v1.1
prunus_persica	Prupe.1G478200_v2.0.a1
pyrus_communis	pycom15g11070
rosa_chinensis	RchiOBHm_Chr6g0298241
rosa_laevigata	RLG00000011521
rosa_roxburghii	Rroxscaffold_7G00169820
rosa_rugosa	Rorug06G0279700 Rorug06G0279800
rosa_samantha	Rh6AG390200 Rh6BG398600 Rh6CG404500 Rh6DG391200
rosa_wichuraiana	Rw6G034060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	739, 838
AccB1I	GGYRCC	1 cut(s)	841
AccII	CGCG	2 cut(s)	159, 170
AciI	CCGC	8 cut(s)	145, 157, 227, 577, 587, 590, 937, 988
AclI	AACGTT	1 cut(s)	1021
AclWI	GGATC	1 cut(s)	300
AcoI	YGGCCR	1 cut(s)	74
AcuI	CTGAAG	2 cut(s)	49, 908
AfaI	GTAC	1 cut(s)	93
AfiI	CCNNNNNNNGG	1 cut(s)	1062
AgsI	TTSAA	6 cut(s)	562, 598, 827, 905, 914, 1013
AjiI	CACGTC	1 cut(s)	101
AjuI	GAANNNNNNNTTGG	2 cut(s)	185, 217
AluBI	AGCT	8 cut(s)	346, 355, 474, 574, 638, 643, 773, 823
AluI	AGCT	8 cut(s)	346, 355, 474, 574, 638, 643, 773, 823
Alw26I	GTCTC	1 cut(s)	877
AlwI	GGATC	1 cut(s)	300
AlwNI	CAGNNNCTG	1 cut(s)	815
Ama87I	CYCGRG	2 cut(s)	789, 1047
AoxI	GGCC	3 cut(s)	74, 938, 1064
ApeKI	GCWGC	6 cut(s)	280, 571, 574, 635, 713, 960
ArsI	GACNNNNNNTTYG	6 cut(s)	103, 135, 299, 331, 443, 475
Asp700I	GAANNNNTTC	2 cut(s)	675, 1035
AspLEI	GCGC	6 cut(s)	19, 161, 172, 271, 612, 898
AspS9I	GGNCC	1 cut(s)	939
AsuHPI	GGTGA	2 cut(s)	404, 565
AvaI	CYCGRG	2 cut(s)	789, 1047
BaeGI	GKGCMC	1 cut(s)	846
BanI	GGYRCC	1 cut(s)	841
BbsI	GAAGAC	3 cut(s)	51, 569, 1020
BbvI	GCAGC	6 cut(s)	267, 561, 583, 647, 700, 972
BceAI	ACGGC	4 cut(s)	40, 89, 819, 1079
BcoDI	GTCTC	1 cut(s)	877
BfaI	CTAG	1 cut(s)	1084
BfmI	CTRYAG	4 cut(s)	735, 765, 807, 831
BfoI	RGCGCY	1 cut(s)	20
BfuAI	ACCTGC	2 cut(s)	739, 838
BlpI	GCTNAGC	1 cut(s)	639
BmeT110I	CYCGRG	2 cut(s)	789, 1047
BmgBI	CACGTC	1 cut(s)	101
BmgT120I	GGNCC	1 cut(s)	939
BmiI	GGNNCC	3 cut(s)	152, 843, 1053
BmrI	ACTGGG	1 cut(s)	389
BmsI	GCATC	3 cut(s)	247, 256, 320
BmuI	ACTGGG	1 cut(s)	389
BpiI	GAAGAC	3 cut(s)	51, 569, 1020
BpmI	CTGGAG	1 cut(s)	305
Bpu1102I	GCTNAGC	1 cut(s)	639
BsaJI	CCNNGG	2 cut(s)	30, 135
BsaWI	WCCGGW	1 cut(s)	550
Bsc4I	CCNNNNNNNGG	1 cut(s)	1062
Bse1I	ACTGG	1 cut(s)	384
Bse3DI	GCAATG	1 cut(s)	957
BseDI	CCNNGG	2 cut(s)	30, 135
BseGI	GGATG	4 cut(s)	250, 256, 262, 448
BseLI	CCNNNNNNNGG	1 cut(s)	1062
BseMI	GCAATG	1 cut(s)	957
BseMII	CTCAG	2 cut(s)	630, 1017
BseNI	ACTGG	1 cut(s)	384
BseRI	GAGGAG	8 cut(s)	251, 254, 302, 338, 452, 542, 545, 548
BseSI	GKGCMC	1 cut(s)	846
BseXI	GCAGC	6 cut(s)	267, 561, 583, 647, 700, 972
Bsh1236I	CGCG	2 cut(s)	159, 170
BshFI	GGCC	3 cut(s)	76, 940, 1066
BshNI	GGYRCC	1 cut(s)	841
BsiHKCI	CYCGRG	2 cut(s)	789, 1047
BsiSI	CCGG	2 cut(s)	148, 551
BslFI	GGGAC	1 cut(s)	736
BslI	CCNNNNNNNGG	1 cut(s)	1062
BsmAI	GTCTC	1 cut(s)	877
BsmFI	GGGAC	1 cut(s)	736
BsnI	GGCC	3 cut(s)	76, 940, 1066
BsoBI	CYCGRG	2 cut(s)	789, 1047
Bsp1286I	GDGCHC	1 cut(s)	846
Bsp143I	GATC	1 cut(s)	292
Bsp1720I	GCTNAGC	1 cut(s)	639
BspACI	CCGC	8 cut(s)	145, 157, 227, 577, 587, 590, 937, 988
BspANI	GGCC	3 cut(s)	76, 940, 1066
BspCNI	CTCAG	2 cut(s)	631, 1018
BspFNI	CGCG	2 cut(s)	159, 170
BspLI	GGNNCC	3 cut(s)	152, 843, 1053
BspMAI	CTGCAG	1 cut(s)	835
BspMI	ACCTGC	2 cut(s)	739, 838
BspPI	GGATC	1 cut(s)	300
BspQI	GCTCTTC	1 cut(s)	336
BspT107I	GGYRCC	1 cut(s)	841
BsrDI	GCAATG	1 cut(s)	957
BsrI	ACTGG	1 cut(s)	384
BssECI	CCNNGG	2 cut(s)	30, 135
BssMI	GATC	1 cut(s)	292
BssT1I	CCWWGG	2 cut(s)	30, 135
Bst4CI	ACNGT	4 cut(s)	51, 392, 739, 1081
Bst6I	CTCTTC	3 cut(s)	336, 429, 534
BstC8I	GCNNGC	3 cut(s)	132, 142, 1068
BstDEI	CTNAG	2 cut(s)	639, 1026
BstF5I	GGATG	4 cut(s)	250, 256, 262, 448
BstFNI	CGCG	2 cut(s)	159, 170
BstH2I	RGCGCY	1 cut(s)	20
BstHHI	GCGC	6 cut(s)	19, 161, 172, 271, 612, 898
BstKTI	GATC	1 cut(s)	295
BstMAI	GTCTC	1 cut(s)	877
BstMBI	GATC	1 cut(s)	292
BstMWI	GCNNNNNNNGC	5 cut(s)	167, 266, 277, 352, 618
BstNSI	RCATGY	1 cut(s)	974
BstSFI	CTRYAG	4 cut(s)	735, 765, 807, 831
BstSLI	GKGCMC	1 cut(s)	846
BstUI	CGCG	2 cut(s)	159, 170
BstV1I	GCAGC	6 cut(s)	267, 561, 583, 647, 700, 972
BstV2I	GAAGAC	3 cut(s)	51, 569, 1020
BstX2I	RGATCY	1 cut(s)	292
BstXI	CCANNNNNNTGG	1 cut(s)	88
BstYI	RGATCY	1 cut(s)	292
BsuRI	GGCC	3 cut(s)	76, 940, 1066
BtrI	CACGTC	1 cut(s)	101
BtsCI	GGATG	4 cut(s)	250, 256, 262, 448
BtsI	GCAGTG	1 cut(s)	840
BtsIMutI	CAGTG	3 cut(s)	377, 744, 840
BveI	ACCTGC	2 cut(s)	739, 838
Cac8I	GCNNGC	3 cut(s)	132, 142, 1068
CaiI	CAGNNNCTG	1 cut(s)	815
CfoI	GCGC	6 cut(s)	19, 161, 172, 271, 612, 898
Cfr13I	GGNCC	1 cut(s)	939
CseI	GACGC	1 cut(s)	317
Csp6I	GTAC	1 cut(s)	92
CviAII	CATG	2 cut(s)	851, 971
CviQI	GTAC	1 cut(s)	92
DdeI	CTNAG	2 cut(s)	639, 1026
DpnI	GATC	1 cut(s)	294
DpnII	GATC	1 cut(s)	292
EaeI	YGGCCR	1 cut(s)	74
Eam1104I	CTCTTC	3 cut(s)	336, 429, 534
EarI	CTCTTC	3 cut(s)	336, 429, 534
EciI	GGCGGA	1 cut(s)	242
Eco130I	CCWWGG	2 cut(s)	30, 135
Eco32I	GATATC	1 cut(s)	744
Eco57I	CTGAAG	2 cut(s)	49, 908
Eco88I	CYCGRG	2 cut(s)	789, 1047
EcoRV	GATATC	1 cut(s)	744
EcoT14I	CCWWGG	2 cut(s)	30, 135
ErhI	CCWWGG	2 cut(s)	30, 135
FaeI	CATG	2 cut(s)	854, 974
FaiI	YATR	7 cut(s)	477, 623, 779, 852, 924, 965, 972
FaqI	GGGAC	1 cut(s)	736
FatI	CATG	2 cut(s)	850, 970
FauI	CCCGC	1 cut(s)	995
FokI	GGATG	4 cut(s)	257, 263, 269, 455
FspBI	CTAG	1 cut(s)	1084
GlaI	GCGC	6 cut(s)	18, 160, 171, 270, 611, 897
GsuI	CTGGAG	1 cut(s)	305
HaeII	RGCGCY	1 cut(s)	20
HaeIII	GGCC	3 cut(s)	76, 940, 1066
HapII	CCGG	2 cut(s)	148, 551
HgaI	GACGC	1 cut(s)	317
HhaI	GCGC	6 cut(s)	19, 161, 172, 271, 612, 898
Hin1II	CATG	2 cut(s)	854, 974
Hin6I	GCGC	6 cut(s)	17, 159, 170, 269, 610, 896
HinP1I	GCGC	6 cut(s)	17, 159, 170, 269, 610, 896
HindIII	AAGCTT	1 cut(s)	821
HinfI	GANTC	3 cut(s)	112, 812, 1043
HpaII	CCGG	2 cut(s)	148, 551
HphI	GGTGA	2 cut(s)	404, 565
Hpy166II	GTNNAC	2 cut(s)	126, 683
Hpy188I	TCNGA	3 cut(s)	68, 111, 1027
Hpy188III	TCNNGA	5 cut(s)	650, 668, 680, 791, 1040
Hpy8I	GTNNAC	2 cut(s)	126, 683
Hpy99I	CGWCG	5 cut(s)	308, 311, 422, 455, 458
HpyAV	CCTTC	5 cut(s)	73, 205, 832, 992, 1025
HpyCH4III	ACNGT	4 cut(s)	51, 392, 739, 1081
HpyCH4IV	ACGT	2 cut(s)	100, 1021
HpyCH4V	TGCA	5 cut(s)	371, 635, 833, 950, 970
HpyF10VI	GCNNNNNNNGC	5 cut(s)	167, 266, 277, 352, 618
HpyF3I	CTNAG	2 cut(s)	639, 1026
HpySE526I	ACGT	2 cut(s)	100, 1021
Hsp92II	CATG	2 cut(s)	854, 974
HspAI	GCGC	6 cut(s)	17, 159, 170, 269, 610, 896
Kzo9I	GATC	1 cut(s)	292
LguI	GCTCTTC	1 cut(s)	336
Lsp1109I	GCAGC	6 cut(s)	267, 561, 583, 647, 700, 972
LweI	GCATC	3 cut(s)	247, 256, 320
MaeI	CTAG	1 cut(s)	1084
MaeII	ACGT	2 cut(s)	100, 1021
MaeIII	GTNAC	3 cut(s)	101, 392, 973
MalI	GATC	1 cut(s)	294
MboI	GATC	1 cut(s)	292
MflI	RGATCY	1 cut(s)	292
MhlI	GDGCHC	1 cut(s)	846
MluCI	AATT	2 cut(s)	384, 671
MlyI	GAGTC	1 cut(s)	106
MmeI	TCCRAC	1 cut(s)	134
MroXI	GAANNNNTTC	2 cut(s)	675, 1035
MseI	TTAA	1 cut(s)	332
MspA1I	CMGCKG	2 cut(s)	574, 638
MspI	CCGG	2 cut(s)	148, 551
MvnI	CGCG	2 cut(s)	159, 170
MwoI	GCNNNNNNNGC	5 cut(s)	167, 266, 277, 352, 618
NdeII	GATC	1 cut(s)	292
NlaIII	CATG	2 cut(s)	854, 974
NlaIV	GGNNCC	3 cut(s)	152, 843, 1053
NmuCI	GTSAC	3 cut(s)	101, 392, 973
NspI	RCATGY	1 cut(s)	974
PaeR7I	CTCGAG	1 cut(s)	789
PciSI	GCTCTTC	1 cut(s)	336
PcsI	WCGNNNNNNNCGW	2 cut(s)	417, 423
PdmI	GAANNNNTTC	2 cut(s)	675, 1035
PfeI	GAWTC	2 cut(s)	812, 1043
PleI	GAGTC	1 cut(s)	106
PpsI	GAGTC	1 cut(s)	106
Psp1406I	AACGTT	1 cut(s)	1021
PspN4I	GGNNCC	3 cut(s)	152, 843, 1053
PspPI	GGNCC	1 cut(s)	939
PstI	CTGCAG	1 cut(s)	835
PstNI	CAGNNNCTG	1 cut(s)	815
PsuI	RGATCY	1 cut(s)	292
PvuII	CAGCTG	2 cut(s)	574, 638
RsaI	GTAC	1 cut(s)	93
RsaNI	GTAC	1 cut(s)	92
SapI	GCTCTTC	1 cut(s)	336
SaqAI	TTAA	1 cut(s)	332
Sau3AI	GATC	1 cut(s)	292
Sau96I	GGNCC	1 cut(s)	939
SchI	GAGTC	1 cut(s)	106
SduI	GDGCHC	1 cut(s)	846
SfaNI	GCATC	3 cut(s)	247, 256, 320
SfcI	CTRYAG	4 cut(s)	735, 765, 807, 831
Sfr274I	CTCGAG	1 cut(s)	789
SlaI	CTCGAG	1 cut(s)	789
SmlI	CTYRAG	1 cut(s)	789
SmoI	CTYRAG	1 cut(s)	789
Sse9I	AATT	2 cut(s)	384, 671
SsiI	CCGC	8 cut(s)	145, 157, 227, 577, 587, 590, 937, 988
SspMI	CTAG	1 cut(s)	1084
StyI	CCWWGG	2 cut(s)	30, 135
TaaI	ACNGT	4 cut(s)	51, 392, 739, 1081
TaiI	ACGT	2 cut(s)	103, 1024
TaqI	TCGA	5 cut(s)	115, 350, 357, 669, 790
TasI	AATT	2 cut(s)	384, 671
TauI	GCSGC	4 cut(s)	147, 590, 593, 940
TfiI	GAWTC	2 cut(s)	812, 1043
Tru1I	TTAA	1 cut(s)	332
Tru9I	TTAA	1 cut(s)	332
TscAI	CASTG	3 cut(s)	384, 744, 840
TseFI	GTSAC	3 cut(s)	101, 392, 973
TseI	GCWGC	6 cut(s)	280, 571, 574, 635, 713, 960
Tsp45I	GTSAC	3 cut(s)	101, 392, 973
TspDTI	ATGAA	5 cut(s)	203, 447, 534, 741, 839
TspGWI	ACGGA	1 cut(s)	350
TspRI	CASTG	3 cut(s)	384, 744, 840
XceI	RCATGY	1 cut(s)	974
XcmI	CCANNNNNNNNNTGG	2 cut(s)	133, 949
XhoI	CTCGAG	1 cut(s)	789
XmnI	GAANNNNTTC	2 cut(s)	675, 1035
XspI	CTAG	1 cut(s)	1084

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.