pycom15g12020

NAD(P)H-quinone oxidoreductase subunit M

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0016132
Physical Location & Seq
Reverse (-)
8161509 .. 8162602
1094 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 615 bp
ATGGCAGCAACAATGGCAAAGTTTCCACTCTTGGGCTATTTTGGAGGCAAAAAAAAGCTCCAAAAGAGAAGGGATTTCTCCGTAGCAGCTCAGCAGCCAGAAGTCCAAGAGTCGCAGGAGGAGAGAGAAAGTGTGAGGACAGAGAAAGTGCTGGGAACGGGAGGCACACCACTGAGGCCGGTGGAGAAGCAGGTGAATGTGGAGAGCAAGAACATGGGGAGGGAGTACGGTGGGGATTGGCTGAGCAGTGCCACGAGGCACGTCAGGATCTACGCAGCTTACATTGACCCAGAGACTTGCGCCTTCGACCAGACTCAGATGGACAAGCTTACTATTATTCTGGACCCCACCAATGAGTTTGTGTGGACTTCTGAGTCCTGCAACAAGGTCTACTCTTACTTCCAAGAGCTTGTGGATCACTACGAGGGAGCTCCATTGACAGAGTACACTCTCCGTCTGATCGGTTCGGACATCGAGCACTACATAAGGAAGCTGCTATACGATGGGGAAATAAAGTACAACATGGATGCCAGAGTCCTCAACTTCAGCATGGGCAAGCCTCGCATGATGTTCAATAACAATGACATTCAACCGCAAGATGTACAACAGTCATAA

Protein Analysis

205

Amino Acids

23.5

Weight (kDa)

5.51

Isoelectric Point (pI)

50.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NdhM PF10664 81 - 189 6.3e-46 Cyanobacterial and plastid NDH-1 subunit M
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016132)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37925
fragaria_vesca FvH4_2g27960
malus_domestica MD15G1133300.v1.1
prunus_persica Prupe.1G488900_v2.0.a1
pyrus_communis pycom15g12020
rosa_chinensis RchiOBHm_Chr6g0296781
rosa_laevigata RLG00000011659
rosa_multiflora Rmu_ssc0000192.1_g000012
rosa_roxburghii Rroxscaffold_7G00171170
rosa_rugosa Rorug06G0266100 Rorug06G0266200
rosa_samantha Rh6AG377200 Rh6BG385400 Rh6DG377700
rosa_wichuraiana Rw6G032960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 181
AasI GACNNNNNNGTC 1 cut(s) 373
Acc36I ACCTGC 1 cut(s) 181
AccI GTMKAC 1 cut(s) 390
AciI CCGC 1 cut(s) 593
AclWI GGATC 2 cut(s) 275, 423
AcuI CTGAAG 1 cut(s) 529
AfaI GTAC 4 cut(s) 227, 446, 518, 603
AfiI CCNNNNNNNGG 1 cut(s) 32
AgsI TTSAA 2 cut(s) 574, 590
AjiI CACGTC 1 cut(s) 262
AluBI AGCT 7 cut(s) 58, 89, 278, 328, 409, 431, 493
AluI AGCT 7 cut(s) 58, 89, 278, 328, 409, 431, 493
Alw21I GWGCWC 2 cut(s) 433, 480
Alw26I GTCTC 1 cut(s) 287
AlwI GGATC 2 cut(s) 275, 423
AoxI GGCC 1 cut(s) 176
ApeKI GCWGC 5 cut(s) 5, 86, 94, 275, 493
AspLEI GCGC 1 cut(s) 302
AspS9I GGNCC 1 cut(s) 343
AsuHPI GGTGA 1 cut(s) 205
AvaII GGWCC 1 cut(s) 343
BanII GRGCYC 1 cut(s) 433
BarI GAAGNNNNNNTAC 2 cut(s) 482, 514
BauI CACGAG 1 cut(s) 253
Bbv12I GWGCWC 2 cut(s) 433, 480
BbvI GCAGC 5 cut(s) 17, 98, 106, 287, 480
BccI CCATC 2 cut(s) 313, 497
BcoDI GTCTC 1 cut(s) 287
BfuAI ACCTGC 1 cut(s) 181
BisI GCNGC 5 cut(s) 6, 87, 95, 276, 494
BlpI GCTNAGC 2 cut(s) 90, 242
BlsI GCNGC 5 cut(s) 7, 88, 96, 277, 495
Bme18I GGWCC 1 cut(s) 343
BmgBI CACGTC 1 cut(s) 262
BmgT120I GGNCC 1 cut(s) 343
BmiI GGNNCC 1 cut(s) 345
BmsI GCATC 1 cut(s) 517
Bpu1102I GCTNAGC 2 cut(s) 90, 242
Bsc4I CCNNNNNNNGG 1 cut(s) 32
Bse118I RCCGGY 1 cut(s) 178
BseGI GGATG 1 cut(s) 532
BseLI CCNNNNNNNGG 1 cut(s) 32
BseMII CTCAG 5 cut(s) 104, 164, 233, 329, 363
BseRI GAGGAG 1 cut(s) 134
BseXI GCAGC 5 cut(s) 17, 98, 106, 287, 480
BseYI CCCAGC 1 cut(s) 151
BshFI GGCC 1 cut(s) 178
BsiHKAI GWGCWC 2 cut(s) 433, 480
BsiSI CCGG 1 cut(s) 179
BslI CCNNNNNNNGG 1 cut(s) 32
BsmAI GTCTC 1 cut(s) 287
BsnI GGCC 1 cut(s) 178
Bsp1286I GDGCHC 2 cut(s) 433, 480
Bsp1407I TGTACA 1 cut(s) 601
Bsp143I GATC 3 cut(s) 267, 415, 459
Bsp1720I GCTNAGC 2 cut(s) 90, 242
BspACI CCGC 1 cut(s) 593
BspANI GGCC 1 cut(s) 178
BspCNI CTCAG 5 cut(s) 103, 165, 234, 328, 364
BspLI GGNNCC 1 cut(s) 345
BspMI ACCTGC 1 cut(s) 181
BspPI GGATC 2 cut(s) 275, 423
BsrFI RCCGGY 1 cut(s) 178
BsrGI TGTACA 1 cut(s) 601
BssAI RCCGGY 1 cut(s) 178
BssMI GATC 3 cut(s) 267, 415, 459
BssSI CACGAG 1 cut(s) 253
Bst2BI CACGAG 1 cut(s) 253
Bst4CI ACNGT 2 cut(s) 230, 609
BstAUI TGTACA 1 cut(s) 601
BstC8I GCNNGC 1 cut(s) 557
BstDEI CTNAG 5 cut(s) 90, 173, 242, 315, 372
BstF5I GGATG 1 cut(s) 532
BstHHI GCGC 1 cut(s) 302
BstKTI GATC 3 cut(s) 270, 418, 462
BstMAI GTCTC 1 cut(s) 287
BstMBI GATC 3 cut(s) 267, 415, 459
BstMWI GCNNNNNNNGC 2 cut(s) 14, 561
BstV1I GCAGC 5 cut(s) 17, 98, 106, 287, 480
BstX2I RGATCY 1 cut(s) 267
BstYI RGATCY 1 cut(s) 267
BsuRI GGCC 1 cut(s) 178
BtrI CACGTC 1 cut(s) 262
BtsCI GGATG 1 cut(s) 532
BtsI GCAGTG 1 cut(s) 253
BtsIMutI CAGTG 2 cut(s) 170, 253
BveI ACCTGC 1 cut(s) 181
Cac8I GCNNGC 1 cut(s) 557
CfoI GCGC 1 cut(s) 302
Cfr10I RCCGGY 1 cut(s) 178
Cfr13I GGNCC 1 cut(s) 343
Csp6I GTAC 4 cut(s) 226, 445, 517, 602
CviAII CATG 4 cut(s) 214, 523, 550, 565
CviQI GTAC 4 cut(s) 226, 445, 517, 602
DdeI CTNAG 5 cut(s) 90, 173, 242, 315, 372
DpnI GATC 3 cut(s) 269, 417, 461
DpnII GATC 3 cut(s) 267, 415, 459
DrdI GACNNNNNNGTC 1 cut(s) 373
DseDI GACNNNNNNGTC 1 cut(s) 373
Ecl136II GAGCTC 1 cut(s) 431
Eco24I GRGCYC 1 cut(s) 433
Eco47I GGWCC 1 cut(s) 343
Eco53kI GAGCTC 1 cut(s) 431
Eco57I CTGAAG 1 cut(s) 529
EcoICRI GAGCTC 1 cut(s) 431
EcoT38I GRGCYC 1 cut(s) 433
FaeI CATG 4 cut(s) 217, 526, 553, 568
FaiI YATR 7 cut(s) 215, 485, 499, 524, 551, 566, 613
FatI CATG 4 cut(s) 213, 522, 549, 564
FblI GTMKAC 1 cut(s) 390
Fnu4HI GCNGC 5 cut(s) 6, 87, 95, 276, 494
FokI GGATG 1 cut(s) 539
FriOI GRGCYC 1 cut(s) 433
Fsp4HI GCNGC 5 cut(s) 6, 87, 95, 276, 494
GlaI GCGC 1 cut(s) 301
GluI GCNGC 5 cut(s) 6, 87, 95, 276, 494
GsaI CCCAGC 1 cut(s) 155
HaeIII GGCC 1 cut(s) 178
HapII CCGG 1 cut(s) 179
HhaI GCGC 1 cut(s) 302
Hin1II CATG 4 cut(s) 217, 526, 553, 568
Hin6I GCGC 1 cut(s) 300
HinP1I GCGC 1 cut(s) 300
HindIII AAGCTT 1 cut(s) 326
HinfI GANTC 4 cut(s) 110, 313, 374, 534
HpaII CCGG 1 cut(s) 179
HphI GGTGA 1 cut(s) 205
Hpy166II GTNNAC 3 cut(s) 366, 391, 447
Hpy188I TCNGA 4 cut(s) 318, 373, 459, 469
Hpy188III TCNNGA 2 cut(s) 265, 341
Hpy8I GTNNAC 3 cut(s) 366, 391, 447
HpyAV CCTTC 2 cut(s) 63, 313
HpyCH4III ACNGT 2 cut(s) 230, 609
HpyCH4IV ACGT 1 cut(s) 261
HpyCH4V TGCA 1 cut(s) 381
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 561
HpyF3I CTNAG 5 cut(s) 90, 173, 242, 315, 372
HpySE526I ACGT 1 cut(s) 261
Hsp92II CATG 4 cut(s) 217, 526, 553, 568
HspAI GCGC 1 cut(s) 300
Kzo9I GATC 3 cut(s) 267, 415, 459
LmnI GCTCC 3 cut(s) 63, 428, 436
Lsp1109I GCAGC 5 cut(s) 17, 98, 106, 287, 480
LweI GCATC 1 cut(s) 517
MaeII ACGT 1 cut(s) 261
MalI GATC 3 cut(s) 269, 417, 461
MboI GATC 3 cut(s) 267, 415, 459
MflI RGATCY 1 cut(s) 267
MhlI GDGCHC 2 cut(s) 433, 480
MlyI GAGTC 4 cut(s) 119, 307, 383, 543
MspI CCGG 1 cut(s) 179
MwoI GCNNNNNNNGC 2 cut(s) 14, 561
NdeII GATC 3 cut(s) 267, 415, 459
NlaIII CATG 4 cut(s) 217, 526, 553, 568
NlaIV GGNNCC 1 cut(s) 345
PaqCI CACCTGC 1 cut(s) 181
PkrI GCNGC 5 cut(s) 7, 88, 96, 277, 495
PleI GAGTC 4 cut(s) 118, 307, 382, 542
PpsI GAGTC 4 cut(s) 118, 307, 382, 542
Psp124BI GAGCTC 1 cut(s) 433
PspFI CCCAGC 1 cut(s) 151
PspN4I GGNNCC 1 cut(s) 345
PspPI GGNCC 1 cut(s) 343
PsuI RGATCY 1 cut(s) 267
RsaI GTAC 4 cut(s) 227, 446, 518, 603
RsaNI GTAC 4 cut(s) 226, 445, 517, 602
SacI GAGCTC 1 cut(s) 433
SatI GCNGC 5 cut(s) 6, 87, 95, 276, 494
Sau3AI GATC 3 cut(s) 267, 415, 459
Sau96I GGNCC 1 cut(s) 343
SchI GAGTC 4 cut(s) 119, 307, 383, 543
SduI GDGCHC 2 cut(s) 433, 480
SfaNI GCATC 1 cut(s) 517
SinI GGWCC 1 cut(s) 343
SsiI CCGC 1 cut(s) 593
SstI GAGCTC 1 cut(s) 433
TaaI ACNGT 2 cut(s) 230, 609
TaiI ACGT 1 cut(s) 264
TaqI TCGA 2 cut(s) 306, 474
TatI WGTACW 3 cut(s) 444, 516, 601
TscAI CASTG 2 cut(s) 177, 253
TseI GCWGC 5 cut(s) 5, 86, 94, 275, 493
TspGWI ACGGA 2 cut(s) 70, 443
TspRI CASTG 2 cut(s) 177, 253
VpaK11BI GGWCC 1 cut(s) 343
XmiI GTMKAC 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.