pycom15g12410

Arginine and glutamate-rich 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0009853
Physical Location & Seq
Forward (+)
8479147 .. 8480593
1447 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 876 bp
ATGAAAAAAAAAAAAAAGTTTAGGGGTAAATCAGTGAGAGAGATCAGAAAGGAAAAAAAGGAAAAAGAGAAGATGGGACGGAGCATATCGAAGTCGCCGTCGTACAGCAGAGGTCGAAGCCGGAGAGATCGAAGCCGCTCACCCTACTCCACCTCCAGAAGAAATCGTTCGAGTGCCTCCCCGCGCCGCCGTAGGAGTCGGTCGGCAAGTTACAGGCGACGCAAGAGTCGGTCTCCGACACCCAGACGACCTAATAGACGACATAGAAGCAGAAGCAGAAGCAGAAGCAGCTCTTTGTCTCCTCCTTTGCCCAAATCTCACAGTCCACGCCTGACCTCAAACGAACGCAAAAATGCTGCTGACAAACTCAAGAAAGAGGAGGAAGAAAAAATCAGGCGGCAGCAGGAGGCCGAACTCAAACAGTTGGAAGAAGAGACTGCAAGGAGACTTGAGGAAGCGATTCGGAAAAATGTGGAGGAGAGGCTGGCTTCAGATGAAGTTAAGTCAGAGATTGAGAGGCGTATAGAAGAAGGTCGGAAGAAATTGTTTGAGGATGTTAAAGCTCAACTTGATATGGAAAAGGAAGCTGCTCTTGTTGAAGCAAGACGGAAAGAAGAACAAGCTCGGAAAGAGAGAGAAGAGCTTGATAAGATGCTGGAGGAGAACCGGAGGAGGGTGGAAGAGGCTCAGAGAAGAGAAGCTTTGGAACTGCAGACCAAAGAAGAGGAACGGTATCGAGAGTTGGAGCTGATTCAGAGACAAAAAGAAGAGGCTGCGAGGAGAAAAAAACTGGAAGAGGAAGAAGAACATGCAAATCTGATGAAGTTGTCAAGTAAGAGTAAATCACGGTCAAAGTCTTTTGGTGCTGGTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ARGLU

Protein Analysis

292

Amino Acids

34.96

Weight (kDa)

10.66

Isoelectric Point (pI)

112.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARGLU PF15346 135 - 285 1.3e-34 Arginine and glutamate-rich 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 225
AccBSI CCGCTC 1 cut(s) 138
AccII CGCG 1 cut(s) 184
AciI CCGC 4 cut(s) 136, 182, 187, 397
AcuI CTGAAG 1 cut(s) 474
AfaI GTAC 1 cut(s) 104
AfiI CCNNNNNNNGG 1 cut(s) 673
AgsI TTSAA 1 cut(s) 599
AluBI AGCT 7 cut(s) 291, 563, 587, 623, 643, 701, 748
AluI AGCT 7 cut(s) 291, 563, 587, 623, 643, 701, 748
Alw26I GTCTC 5 cut(s) 237, 303, 428, 439, 751
AoxI GGCC 1 cut(s) 408
ApeKI GCWGC 5 cut(s) 288, 356, 400, 587, 773
ArsI GACNNNNNNTTYG 2 cut(s) 83, 115
Asp700I GAANNNNTTC 2 cut(s) 166, 459
AspLEI GCGC 1 cut(s) 186
AsuHPI GGTGA 1 cut(s) 132
BbvI GCAGC 5 cut(s) 300, 343, 412, 574, 760
BccI CCATC 1 cut(s) 67
BceAI ACGGC 2 cut(s) 82, 174
BcoDI GTCTC 5 cut(s) 237, 303, 428, 439, 751
BfmI CTRYAG 1 cut(s) 710
BisI GCNGC 8 cut(s) 136, 187, 289, 357, 398, 401, 588, 774
BlsI GCNGC 8 cut(s) 137, 188, 290, 358, 399, 402, 589, 775
BmsI GCATC 1 cut(s) 642
BplI GAGNNNNNCTC 2 cut(s) 217, 249
BpmI CTGGAG 2 cut(s) 139, 677
BpuEI CTTGAG 2 cut(s) 353, 470
BsaI GGTCTC 1 cut(s) 237
BsaWI WCCGGW 1 cut(s) 666
BsaXI ACNNNNNCTCC 2 cut(s) 137, 167
Bsc4I CCNNNNNNNGG 1 cut(s) 673
Bse1I ACTGG 1 cut(s) 795
BseGI GGATG 1 cut(s) 559
BseLI CCNNNNNNNGG 1 cut(s) 673
BseMII CTCAG 1 cut(s) 701
BseNI ACTGG 1 cut(s) 795
BseRI GAGGAG 6 cut(s) 291, 392, 491, 674, 685, 793
BseXI GCAGC 5 cut(s) 300, 343, 412, 574, 760
Bsh1236I CGCG 1 cut(s) 184
Bsh1285I CGRYCG 1 cut(s) 203
BshFI GGCC 1 cut(s) 410
BsiEI CGRYCG 1 cut(s) 203
BsiSI CCGG 2 cut(s) 121, 667
BslFI GGGAC 1 cut(s) 90
BslI CCNNNNNNNGG 1 cut(s) 673
BsmAI GTCTC 5 cut(s) 237, 303, 428, 439, 751
BsmFI GGGAC 1 cut(s) 90
BsnI GGCC 1 cut(s) 410
Bso31I GGTCTC 1 cut(s) 237
Bsp143I GATC 2 cut(s) 42, 127
BspACI CCGC 4 cut(s) 136, 182, 187, 397
BspANI GGCC 1 cut(s) 410
BspCNI CTCAG 1 cut(s) 700
BspFNI CGCG 1 cut(s) 184
BspMAI CTGCAG 1 cut(s) 714
BspQI GCTCTTC 1 cut(s) 633
BspTNI GGTCTC 1 cut(s) 237
BsrBI CCGCTC 1 cut(s) 138
BsrI ACTGG 1 cut(s) 795
BssMI GATC 2 cut(s) 42, 127
Bst4CI ACNGT 4 cut(s) 323, 423, 732, 849
Bst6I CTCTTC 7 cut(s) 426, 633, 675, 688, 717, 762, 789
BstC8I GCNNGC 1 cut(s) 486
BstDEI CTNAG 1 cut(s) 687
BstF5I GGATG 1 cut(s) 559
BstFNI CGCG 1 cut(s) 184
BstHHI GCGC 1 cut(s) 186
BstKTI GATC 2 cut(s) 45, 130
BstMAI GTCTC 5 cut(s) 237, 303, 428, 439, 751
BstMBI GATC 2 cut(s) 42, 127
BstMCI CGRYCG 1 cut(s) 203
BstMWI GCNNNNNNNGC 1 cut(s) 288
BstNSI RCATGY 1 cut(s) 812
BstSFI CTRYAG 1 cut(s) 710
BstUI CGCG 1 cut(s) 184
BstV1I GCAGC 5 cut(s) 300, 343, 412, 574, 760
BsuRI GGCC 1 cut(s) 410
BtsCI GGATG 1 cut(s) 559
BtsIMutI CAGTG 1 cut(s) 39
Cac8I GCNNGC 1 cut(s) 486
CfoI GCGC 1 cut(s) 186
CseI GACGC 1 cut(s) 228
Csp6I GTAC 1 cut(s) 103
CviAII CATG 1 cut(s) 809
CviQI GTAC 1 cut(s) 103
DdeI CTNAG 1 cut(s) 687
DpnI GATC 2 cut(s) 44, 129
DpnII GATC 2 cut(s) 42, 127
DrdI GACNNNNNNGTC 1 cut(s) 225
DseDI GACNNNNNNGTC 1 cut(s) 225
Eam1104I CTCTTC 7 cut(s) 426, 633, 675, 688, 717, 762, 789
EarI CTCTTC 7 cut(s) 426, 633, 675, 688, 717, 762, 789
Eco31I GGTCTC 1 cut(s) 237
Eco57I CTGAAG 1 cut(s) 474
FaeI CATG 1 cut(s) 812
FaiI YATR 5 cut(s) 86, 264, 524, 575, 810
FalI AAGNNNNNCTT 8 cut(s) 277, 309, 552, 584, 576, 608, 685, 717
FaqI GGGAC 1 cut(s) 90
FatI CATG 1 cut(s) 808
FauI CCCGC 1 cut(s) 189
Fnu4HI GCNGC 8 cut(s) 136, 187, 289, 357, 398, 401, 588, 774
FokI GGATG 1 cut(s) 566
Fsp4HI GCNGC 8 cut(s) 136, 187, 289, 357, 398, 401, 588, 774
GlaI GCGC 1 cut(s) 185
GluI GCNGC 8 cut(s) 136, 187, 289, 357, 398, 401, 588, 774
GsuI CTGGAG 2 cut(s) 139, 677
HaeIII GGCC 1 cut(s) 410
HapII CCGG 2 cut(s) 121, 667
HgaI GACGC 1 cut(s) 228
HhaI GCGC 1 cut(s) 186
Hin1II CATG 1 cut(s) 812
Hin6I GCGC 1 cut(s) 184
HinP1I GCGC 1 cut(s) 184
HindIII AAGCTT 1 cut(s) 699
HinfI GANTC 4 cut(s) 196, 226, 460, 751
HpaII CCGG 2 cut(s) 121, 667
HphI GGTGA 1 cut(s) 132
Hpy166II GTNNAC 1 cut(s) 326
Hpy188III TCNNGA 3 cut(s) 156, 370, 737
Hpy8I GTNNAC 1 cut(s) 326
Hpy99I CGWCG 2 cut(s) 103, 222
HpyAV CCTTC 1 cut(s) 524
HpyCH4III ACNGT 4 cut(s) 323, 423, 732, 849
HpyCH4V TGCA 3 cut(s) 440, 712, 812
HpyF10VI GCNNNNNNNGC 1 cut(s) 288
HpyF3I CTNAG 1 cut(s) 687
Hsp92II CATG 1 cut(s) 812
HspAI GCGC 1 cut(s) 184
Kzo9I GATC 2 cut(s) 42, 127
LguI GCTCTTC 1 cut(s) 633
LmnI GCTCC 2 cut(s) 81, 745
Lsp1109I GCAGC 5 cut(s) 300, 343, 412, 574, 760
LweI GCATC 1 cut(s) 642
MaeIII GTNAC 1 cut(s) 209
MalI GATC 2 cut(s) 44, 129
MbiI CCGCTC 1 cut(s) 138
MboI GATC 2 cut(s) 42, 127
MluCI AATT 1 cut(s) 542
MlyI GAGTC 2 cut(s) 205, 235
MmeI TCCRAC 4 cut(s) 260, 405, 515, 723
MroXI GAANNNNTTC 2 cut(s) 166, 459
MseI TTAA 3 cut(s) 501, 558, 874
MspI CCGG 2 cut(s) 121, 667
MvnI CGCG 1 cut(s) 184
MwoI GCNNNNNNNGC 1 cut(s) 288
NdeII GATC 2 cut(s) 42, 127
NlaIII CATG 1 cut(s) 812
NspI RCATGY 1 cut(s) 812
PciSI GCTCTTC 1 cut(s) 633
PcsI WCGNNNNNNNCGW 1 cut(s) 95
PdmI GAANNNNTTC 2 cut(s) 166, 459
PfeI GAWTC 2 cut(s) 460, 751
PkrI GCNGC 8 cut(s) 137, 188, 290, 358, 399, 402, 589, 775
PleI GAGTC 2 cut(s) 204, 234
PpsI GAGTC 2 cut(s) 204, 234
PstI CTGCAG 1 cut(s) 714
RsaI GTAC 1 cut(s) 104
RsaNI GTAC 1 cut(s) 103
SapI GCTCTTC 1 cut(s) 633
SaqAI TTAA 3 cut(s) 501, 558, 874
SatI GCNGC 8 cut(s) 136, 187, 289, 357, 398, 401, 588, 774
Sau3AI GATC 2 cut(s) 42, 127
SchI GAGTC 2 cut(s) 205, 235
SfaNI GCATC 1 cut(s) 642
SfcI CTRYAG 1 cut(s) 710
SmlI CTYRAG 2 cut(s) 368, 449
SmoI CTYRAG 2 cut(s) 368, 449
Sse9I AATT 1 cut(s) 542
SsiI CCGC 4 cut(s) 136, 182, 187, 397
TaaI ACNGT 4 cut(s) 323, 423, 732, 849
TaqI TCGA 5 cut(s) 89, 115, 130, 170, 736
TaqII GACCGA 2 cut(s) 189, 219
TasI AATT 1 cut(s) 542
TauI GCSGC 3 cut(s) 138, 189, 400
TfiI GAWTC 2 cut(s) 460, 751
Tru1I TTAA 3 cut(s) 501, 558, 874
Tru9I TTAA 3 cut(s) 501, 558, 874
TscAI CASTG 1 cut(s) 39
TseI GCWGC 5 cut(s) 288, 356, 400, 587, 773
TspDTI ATGAA 3 cut(s) 17, 510, 836
TspGWI ACGGA 2 cut(s) 94, 622
TspRI CASTG 1 cut(s) 39
XceI RCATGY 1 cut(s) 812
XmnI GAANNNNTTC 2 cut(s) 166, 459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.