Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0007219

Physical Location & Seq

Genomic Coordinates Reverse (-)

9617302 .. 9618243

Gene Structure 942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGATTTGTGACGTTTTGTTTTCAGTTCGGGGTCGGGATGTTACTGTGGCATCTCAAAATAAAAGTCTTAACCTACAAACAACAGGACGATGGACGAAAGTGAAATTTTGCGAAAACTTAAATGGACTCGTTTTGAATAAGGAAAACAAAGGAAGAGAAAAGGGGGTAGGAGGCGGCACAGTGAGGATGGCCTCTTCTTCTTCTTGTTCAGTTGGGTCCCCGATTTCTCTGACTCAGCGCCACCGTCCTCCTCCGAGTCTAAGTCCTAGTTGTATACGGTACGCGGTGCTCGGAGCTGGATTTTCCGGCCTCTACGTCGCGTGGCACATGTTAAAGCAGAGCTCGAAAGACTCCAACATCCGCGTCGACATATACGATGAAGTTGGAATCGGCGGTTCCGGTGGACTTCTTCACCCTTATTCCCCTAAAGCCAAGCTTCTGTGGCGTGCTGCCGACTGCTGGACTGAGTCCTTGAACCTTTTGAGCGCCGCCGTGGCTTCCGCTGCTCCAAATTCTGACGGCCCAATGCCAATTGTTAGAAGAAGGCACTGTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000347 GO:0000785 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006268 GO:0006275 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030174 GO:0031323 GO:0031326 GO:0032392 GO:0032508 GO:0032991 GO:0034641 GO:0034645 GO:0042555 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051276 GO:0060255 GO:0065007 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901576 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03030 ko04110 ko04111 ko04113 ko05206 map03030 map04110 map04111 map04113 map05206

Pfam Domains

Protein Families

MCM MCM_N MCM_OB Mg_chelatase

Protein Analysis

186

Amino Acids

19.95

Weight (kDa)

9.73

Isoelectric Point (pI)

59.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22650 AT2G22650 AT2G22650
fragaria_vesca	FvH4_1g01491 FvH4_5g35120 FvH4_5g35120
malus_domestica	MD02G1011800.v1.1
prunus_persica	Prupe.7G252600_v2.0.a1
pyrus_communis	pycom02g01110 pycom15g14120
rosa_chinensis	RchiOBHm_Chr2g0086401
rosa_laevigata	RLG00000015755
rosa_multiflora	Rmu_sc0005127.1_g000008
rosa_roxburghii	Rroxscaffold_2G00154610 Rroxscaffold_2G00154630
rosa_rugosa	Rorug01G0467100
rosa_samantha	Rh2AG017300 Rh2AG017600 Rh2AG017700 Rh2BG017100 Rh2BG017300 Rh2CG018100 Rh2DG018800 Rh2DG019000
rosa_wichuraiana	Rw2G001470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	274, 366
AccII	CGCG	3 cut(s)	284, 320, 363
AciI	CCGC	6 cut(s)	174, 284, 361, 393, 489, 501
AcsI	RAATTY	2 cut(s)	104, 511
AfaI	GTAC	1 cut(s)	281
AfiI	CCNNNNNNNGG	1 cut(s)	459
AflIII	ACRYGT	1 cut(s)	327
AgsI	TTSAA	2 cut(s)	136, 475
AluBI	AGCT	3 cut(s)	296, 342, 436
AluI	AGCT	3 cut(s)	296, 342, 436
Alw21I	GWGCWC	2 cut(s)	291, 344
AoxI	GGCC	3 cut(s)	189, 307, 520
ApeKI	GCWGC	2 cut(s)	449, 503
ApoI	RAATTY	2 cut(s)	104, 511
ArsI	GACNNNNNNTTYG	2 cut(s)	49, 81
AspLEI	GCGC	2 cut(s)	240, 488
AspS9I	GGNCC	2 cut(s)	216, 521
AsuHPI	GGTGA	1 cut(s)	404
AvaII	GGWCC	1 cut(s)	216
BanII	GRGCYC	1 cut(s)	344
Bbv12I	GWGCWC	2 cut(s)	291, 344
BbvI	GCAGC	2 cut(s)	436, 490
BccI	CCATC	2 cut(s)	84, 181
BceAI	ACGGC	2 cut(s)	476, 535
BfaI	CTAG	1 cut(s)	267
BfoI	RGCGCY	2 cut(s)	241, 489
BglI	GCCNNNNNGGC	1 cut(s)	494
BisI	GCNGC	4 cut(s)	175, 450, 489, 504
BlsI	GCNGC	4 cut(s)	176, 451, 490, 505
Bme18I	GGWCC	1 cut(s)	216
BmgT120I	GGNCC	2 cut(s)	216, 521
BmiI	GGNNCC	3 cut(s)	217, 218, 397
BmsI	GCATC	1 cut(s)	59
BsaJI	CCNNGG	1 cut(s)	492
BsaWI	WCCGGW	1 cut(s)	398
Bsc4I	CCNNNNNNNGG	1 cut(s)	459
BseDI	CCNNGG	1 cut(s)	492
BseGI	GGATG	3 cut(s)	43, 192, 357
BseLI	CCNNNNNNNGG	1 cut(s)	459
BseMII	CTCAG	2 cut(s)	248, 456
BseRI	GAGGAG	1 cut(s)	240
BseXI	GCAGC	2 cut(s)	436, 490
Bsh1236I	CGCG	3 cut(s)	284, 320, 363
BshFI	GGCC	3 cut(s)	191, 309, 522
BsiHKAI	GWGCWC	2 cut(s)	291, 344
BsiSI	CCGG	2 cut(s)	306, 399
BslFI	GGGAC	1 cut(s)	202
BslI	CCNNNNNNNGG	1 cut(s)	459
BsmFI	GGGAC	1 cut(s)	202
BsnI	GGCC	3 cut(s)	191, 309, 522
Bsp1286I	GDGCHC	2 cut(s)	291, 344
BspACI	CCGC	6 cut(s)	174, 284, 361, 393, 489, 501
BspANI	GGCC	3 cut(s)	191, 309, 522
BspCNI	CTCAG	2 cut(s)	247, 457
BspFNI	CGCG	3 cut(s)	284, 320, 363
BspLI	GGNNCC	3 cut(s)	217, 218, 397
BssECI	CCNNGG	1 cut(s)	492
BssNAI	GTATAC	1 cut(s)	275
Bst1107I	GTATAC	1 cut(s)	275
Bst4CI	ACNGT	5 cut(s)	46, 181, 245, 279, 551
Bst6I	CTCTTC	2 cut(s)	148, 199
BstC8I	GCNNGC	1 cut(s)	447
BstDEI	CTNAG	3 cut(s)	234, 260, 465
BstDSI	CCRYGG	1 cut(s)	492
BstF5I	GGATG	3 cut(s)	43, 192, 357
BstFNI	CGCG	3 cut(s)	284, 320, 363
BstH2I	RGCGCY	2 cut(s)	241, 489
BstHHI	GCGC	2 cut(s)	240, 488
BstMWI	GCNNNNNNNGC	3 cut(s)	442, 494, 503
BstNSI	RCATGY	1 cut(s)	331
BstUI	CGCG	3 cut(s)	284, 320, 363
BstV1I	GCAGC	2 cut(s)	436, 490
BstZ17I	GTATAC	1 cut(s)	275
BsuRI	GGCC	3 cut(s)	191, 309, 522
BtgI	CCRYGG	1 cut(s)	492
BtsCI	GGATG	3 cut(s)	43, 192, 357
BtsIMutI	CAGTG	2 cut(s)	186, 547
Cac8I	GCNNGC	1 cut(s)	447
CfoI	GCGC	2 cut(s)	240, 488
Cfr13I	GGNCC	2 cut(s)	216, 521
CseI	GACGC	1 cut(s)	352
Csp6I	GTAC	1 cut(s)	280
CviAII	CATG	1 cut(s)	328
CviJI	RGCY	8 cut(s)	191, 296, 309, 342, 431, 436, 497, 522
CviKI_1	RGCY	8 cut(s)	191, 296, 309, 342, 431, 436, 497, 522
CviQI	GTAC	1 cut(s)	280
DdeI	CTNAG	3 cut(s)	234, 260, 465
Eam1104I	CTCTTC	2 cut(s)	148, 199
EarI	CTCTTC	2 cut(s)	148, 199
Ecl136II	GAGCTC	1 cut(s)	342
Eco24I	GRGCYC	1 cut(s)	344
Eco47I	GGWCC	1 cut(s)	216
Eco53kI	GAGCTC	1 cut(s)	342
EcoICRI	GAGCTC	1 cut(s)	342
EcoO109I	RGGNCCY	1 cut(s)	216
EcoT38I	GRGCYC	1 cut(s)	344
FaeI	CATG	1 cut(s)	331
FaiI	YATR	4 cut(s)	275, 329, 371, 373
FalI	AAGNNNNNCTT	2 cut(s)	420, 452
FaqI	GGGAC	1 cut(s)	202
FatI	CATG	1 cut(s)	327
FblI	GTMKAC	2 cut(s)	274, 366
Fnu4HI	GCNGC	4 cut(s)	175, 450, 489, 504
FokI	GGATG	3 cut(s)	50, 199, 344
FriOI	GRGCYC	1 cut(s)	344
Fsp4HI	GCNGC	4 cut(s)	175, 450, 489, 504
FspBI	CTAG	1 cut(s)	267
GlaI	GCGC	2 cut(s)	239, 487
GluI	GCNGC	4 cut(s)	175, 450, 489, 504
HaeII	RGCGCY	2 cut(s)	241, 489
HaeIII	GGCC	3 cut(s)	191, 309, 522
HapII	CCGG	2 cut(s)	306, 399
HgaI	GACGC	1 cut(s)	352
HhaI	GCGC	2 cut(s)	240, 488
Hin1II	CATG	1 cut(s)	331
Hin6I	GCGC	2 cut(s)	238, 486
HinP1I	GCGC	2 cut(s)	238, 486
HincII	GTYRAC	1 cut(s)	367
HindII	GTYRAC	1 cut(s)	367
HindIII	AAGCTT	1 cut(s)	434
HinfI	GANTC	6 cut(s)	126, 232, 256, 350, 387, 467
HpaII	CCGG	2 cut(s)	306, 399
HphI	GGTGA	1 cut(s)	404
Hpy166II	GTNNAC	3 cut(s)	275, 367, 404
Hpy188I	TCNGA	4 cut(s)	231, 255, 293, 517
Hpy188III	TCNNGA	1 cut(s)	35
Hpy8I	GTNNAC	3 cut(s)	275, 367, 404
Hpy99I	CGWCG	2 cut(s)	320, 368
HpyAV	CCTTC	1 cut(s)	537
HpyCH4III	ACNGT	5 cut(s)	46, 181, 245, 279, 551
HpyCH4IV	ACGT	2 cut(s)	12, 315
HpyF10VI	GCNNNNNNNGC	3 cut(s)	442, 494, 503
HpyF3I	CTNAG	3 cut(s)	234, 260, 465
HpySE526I	ACGT	2 cut(s)	12, 315
Hsp92II	CATG	1 cut(s)	331
HspAI	GCGC	2 cut(s)	238, 486
KflI	GGGWCCC	1 cut(s)	216
LmnI	GCTCC	2 cut(s)	293, 511
LpnPI	CCDG	5 cut(s)	69, 282, 319, 412, 445
Lsp1109I	GCAGC	2 cut(s)	436, 490
LweI	GCATC	1 cut(s)	59
MaeI	CTAG	1 cut(s)	267
MaeII	ACGT	2 cut(s)	12, 315
MaeIII	GTNAC	2 cut(s)	8, 40
MboII	GAAGA	6 cut(s)	165, 186, 189, 192, 401, 552
MfeI	CAATTG	1 cut(s)	531
MhlI	GDGCHC	2 cut(s)	291, 344
MluCI	AATT	3 cut(s)	104, 511, 531
MlyI	GAGTC	5 cut(s)	120, 226, 265, 344, 476
MmeI	TCCRAC	2 cut(s)	364, 378
MnlI	CCTC	6 cut(s)	164, 177, 202, 258, 261, 320
MseI	TTAA	3 cut(s)	69, 119, 332
MspA1I	CMGCKG	1 cut(s)	503
MspI	CCGG	2 cut(s)	306, 399
MunI	CAATTG	1 cut(s)	531
MvnI	CGCG	3 cut(s)	284, 320, 363
MwoI	GCNNNNNNNGC	3 cut(s)	442, 494, 503
NlaIII	CATG	1 cut(s)	331
NlaIV	GGNNCC	3 cut(s)	217, 218, 397
NmuCI	GTSAC	1 cut(s)	8
NspI	RCATGY	1 cut(s)	331
PciI	ACATGT	1 cut(s)	327
PcsI	WCGNNNNNNNCGW	1 cut(s)	372
PfeI	GAWTC	1 cut(s)	387
PflFI	GACNNNGTC	1 cut(s)	466
PkrI	GCNGC	4 cut(s)	176, 451, 490, 505
PleI	GAGTC	5 cut(s)	120, 226, 264, 344, 475
PpsI	GAGTC	5 cut(s)	120, 226, 264, 344, 475
PpuMI	RGGWCCY	1 cut(s)	216
PscI	ACATGT	1 cut(s)	327
Psp124BI	GAGCTC	1 cut(s)	344
Psp5II	RGGWCCY	1 cut(s)	216
PspN4I	GGNNCC	3 cut(s)	217, 218, 397
PspPI	GGNCC	2 cut(s)	216, 521
PspPPI	RGGWCCY	1 cut(s)	216
PsyI	GACNNNGTC	1 cut(s)	466
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
SacI	GAGCTC	1 cut(s)	344
SalI	GTCGAC	1 cut(s)	365
SaqAI	TTAA	3 cut(s)	69, 119, 332
SatI	GCNGC	4 cut(s)	175, 450, 489, 504
Sau96I	GGNCC	2 cut(s)	216, 521
SchI	GAGTC	5 cut(s)	120, 226, 265, 344, 476
SduI	GDGCHC	2 cut(s)	291, 344
SetI	ASST	7 cut(s)	15, 75, 298, 318, 344, 438, 480
SfaNI	GCATC	1 cut(s)	59
SinI	GGWCC	1 cut(s)	216
Sse9I	AATT	3 cut(s)	104, 511, 531
SsiI	CCGC	6 cut(s)	174, 284, 361, 393, 489, 501
SspMI	CTAG	1 cut(s)	267
SstI	GAGCTC	1 cut(s)	344
TaaI	ACNGT	5 cut(s)	46, 181, 245, 279, 551
TaiI	ACGT	2 cut(s)	15, 318
TaqI	TCGA	2 cut(s)	344, 366
TasI	AATT	3 cut(s)	104, 511, 531
TauI	GCSGC	2 cut(s)	177, 491
TfiI	GAWTC	1 cut(s)	387
Tru1I	TTAA	3 cut(s)	69, 119, 332
Tru9I	TTAA	3 cut(s)	69, 119, 332
TscAI	CASTG	2 cut(s)	186, 554
TseFI	GTSAC	1 cut(s)	8
TseI	GCWGC	2 cut(s)	449, 503
Tsp45I	GTSAC	1 cut(s)	8
TspDTI	ATGAA	1 cut(s)	393
TspRI	CASTG	2 cut(s)	186, 554
Tth111I	GACNNNGTC	1 cut(s)	466
VpaK11BI	GGWCC	1 cut(s)	216
XapI	RAATTY	2 cut(s)	104, 511
XceI	RCATGY	1 cut(s)	331
XmiI	GTMKAC	2 cut(s)	274, 366
XspI	CTAG	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.