Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0009268

Physical Location & Seq

Genomic Coordinates Reverse (-)

10966942 .. 10969599

Gene Structure 2658 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1563 bp

ATGTTCAATTTCCCTTCTCCCAATCTCACTTATGAAGAAAAGGAGCTCCCGTTTACCACTTGGGCTTTCTGTAAATTGCACTTGTGTGTGGCCTTGTCTCACGGCACCGGGCACCGGCAGCTGTGCGTCTCAATCGGTGACAGTTGTCGTCACTCCAGCCTCCTTAGTCACCACCTACCTCCGTTCGCTTTCCTTCACTCTCCTCTAAAACCGCCACCACGCAATGGAAGCATGGTCAGGCTGTATCTCCTCTCTTCTTCCACTCACCTCCTTTCTTTCTGTAGAAAATCCACTCTCCACACCCTGACCAGACGACCTCTTTCTTCCACCTCCACCGCCGCCGCCACCATGTCCATAAGCCTCCAGTCCCACGCCTTCGCTGGCAATCCTCTGCTATCCAAGACCCCAAATCCCAGCGACCCGTTTTCACCATCCCAAGCCCTCGAGACCCTCAAGACCCAACTTTTGGAAGGGGCCCAATTGCCCTCTTCCCTCGGCTTCAAGGTTCTGCCCTTCAGAAAGGGCAGGCCTTTAGCCTCCTCAAGCGTTGGGGCCGGCGATTCCGCGCCAAATTGGCATCTGGGTTGGATCAGTTTGTCTGAGTGTAAAGGTTTCCTGGCCAATTGTGGGGTTCAGCTGAGTGGAGAGTCGCTGGTTTATCTGGGTTCTCGGCCCGAAGACGATGTCGTTTATTGGGCAATTGATGTTTCTGCTGAGAGTAACTTGGTTACTGAATTGGGTAGCAAGCAATTGTGTTTTGTTGAGCTGAGGACGCTTATGGTGGCTACCGATTGGGCTGATGCTCGAGCTATGGGGGAGTTGGCAATTGCTGGACATGCCAGGGCTTTGCTAGAATGGCATAGTATATCACAGTTTTGTGGACATTGTGGAGAAAAAACAGTCCCCAAGGAAGCTGGGAGGCGGAAGCAATGTTCTAGTGAGCAGTGCAGAAAGCGGGTCTACCCTCGTGTTGACCCGGTTGTCATAATGTTAGTCATTGATAGAGAGAATGACCGTGCTCTATTAAGTAGACAGTTTCGATTTGTACCTCGAATGTGGAGCTGCTTAGCTGGTTTTATAGAGCCCGGAGAAAGCCTAGAAGAAGCAGTGAGGAGAGAAACGTGGGAGGAGACCGGAATTGAAGTAGGAGAAGTTGTCTATCATAGCTCTCAGCCATGGCCTGTTGGACCAAGTAGCATGCCGTGCCAGTTGATGGTTGGGTTTTTTGCATATGCAAAGTCACTTGAAATAAATGTGGACAAGGAAGAGTTGGAAGATGCTCAGTGGCACAGCAGAGAAGATGTGAAGAGAGCCTTGACATTTGCCGAGTACAAGAAGGCACAGAGAACGGCGGCATCAAGGGTAGAACAGATGTGCAAAGGAGTAGAGAAAGAGCAGAGCTTGTCTGCCGACTTCAATGTTGAAAGTGGCGAACTCGCCTCCATGTTTATACCCGGGCCATTTGCAATTGCCCATCACCTTATCTCTTCATGGGCCTATCAGGATGGAACCGATGGTGCCGCAGCTCTAAAACAATCTAGTGGTTCTACTTCGAATTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00760 ko01100 ko04146 map00760 map01100 map04146

Pfam Domains

Protein Families

NUDIX NUDIX-like zf-NADH-PPase

Protein Analysis

521

Amino Acids

57.33

Weight (kDa)

6.66

Isoelectric Point (pI)

45.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX-like	PF09296	169 - 286	5.5e-06	NADH pyrophosphatase-like rudimentary NUDIX domain
Zn_ribbon_NUD	PF09297	290 - 321	1.1e-07	NADH pyrophosphatase zinc ribbon domain
NUDIX	PF00293	327 - 439	1.7e-19	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20070
fragaria_vesca	FvH4_1g03600 FvH4_1g03600 FvH4_1g03600
malus_domestica	MD00G1107300.v1.1 MD02G1035600.v1.1 MD15G1175700.v1.1
prunus_persica	Prupe.7G239600_v2.0.a1
pyrus_communis	pycom02g02940 pycom15g15770 pycom15g15780
rosa_chinensis	RchiOBHm_Chr2g0089131
rosa_laevigata	RLG00000015994
rosa_multiflora	Rmu_sc0016750.1_g000004 Rmu_sc0029975.1_g000004
rosa_roxburghii	Rroxscaffold_2G00152220
rosa_rugosa	Rorug01G0487600
rosa_samantha	Rh2AG043200 Rh2BG042000 Rh2CG043200 Rh2DG042200
rosa_wichuraiana	Rw2G003440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	980
AccB1I	GGYRCC	3 cut(s)	104, 111, 1517
AccB7I	CCANNNNNTGG	3 cut(s)	224, 466, 1213
AccI	GTMKAC	2 cut(s)	960, 1030
AccII	CGCG	1 cut(s)	566
AciI	CCGC	9 cut(s)	212, 336, 339, 342, 564, 922, 955, 1352, 1521
AclWI	GGATC	1 cut(s)	596
AcoI	YGGCCR	1 cut(s)	618
AcsI	RAATTY	1 cut(s)	1555
AcuI	CTGAAG	1 cut(s)	499
AfaI	GTAC	2 cut(s)	1047, 1331
AfiI	CCNNNNNNNGG	5 cut(s)	114, 224, 466, 627, 1213
AgsI	TTSAA	6 cut(s)	7, 502, 1142, 1247, 1417, 1424
AjnI	CCWGG	2 cut(s)	615, 839
AleI	CACNNNNGTG	1 cut(s)	84
AloI	GAACNNNNNNTCC	2 cut(s)	916, 948
Alw21I	GWGCWC	2 cut(s)	48, 1021
Alw26I	GTCTC	4 cut(s)	102, 133, 440, 1124
AlwI	GGATC	1 cut(s)	596
Ama87I	CYCGRG	3 cut(s)	443, 804, 1454
AoxI	GGCC	9 cut(s)	90, 474, 527, 552, 618, 671, 1178, 1457, 1494
ApaI	GGGCCC	1 cut(s)	478
ApeKI	GCWGC	3 cut(s)	118, 1062, 1523
ApoI	RAATTY	1 cut(s)	1555
ArsI	GACNNNNNNTTYG	4 cut(s)	448, 480, 669, 701
AspLEI	GCGC	1 cut(s)	568
AspS9I	GGNCC	7 cut(s)	474, 475, 552, 672, 1187, 1457, 1494
AsuC2I	CCSGG	5 cut(s)	109, 977, 1086, 1455, 1456
AsuHPI	GGTGA	5 cut(s)	149, 161, 257, 420, 1469
AsuII	TTCGAA	1 cut(s)	1553
AvaI	CYCGRG	3 cut(s)	443, 804, 1454
AvaII	GGWCC	1 cut(s)	1187
BaeGI	GKGCMC	2 cut(s)	114, 478
BalI	TGGCCA	1 cut(s)	620
BanI	GGYRCC	3 cut(s)	104, 111, 1517
BanII	GRGCYC	3 cut(s)	48, 478, 1086
BauI	CACGAG	1 cut(s)	966
BbsI	GAAGAC	1 cut(s)	684
Bbv12I	GWGCWC	2 cut(s)	48, 1021
BbvCI	CCTCAGC	1 cut(s)	767
BbvI	GCAGC	3 cut(s)	130, 1049, 1535
BccI	CCATC	5 cut(s)	439, 1207, 1482, 1499, 1508
BceAI	ACGGC	3 cut(s)	118, 1186, 1365
BciT130I	CCWGG	2 cut(s)	617, 841
BcnI	CCSGG	5 cut(s)	109, 977, 1086, 1455, 1456
BcoDI	GTCTC	4 cut(s)	102, 133, 440, 1124
BfaI	CTAG	4 cut(s)	851, 936, 1097, 1539
BfmI	CTRYAG	1 cut(s)	280
BglI	GCCNNNNNGGC	1 cut(s)	574
BisI	GCNGC	7 cut(s)	119, 339, 342, 1063, 1353, 1521, 1524
BlpI	GCTNAGC	1 cut(s)	1066
BlsI	GCNGC	7 cut(s)	120, 340, 343, 1064, 1354, 1522, 1525
Bme1390I	CCNGG	7 cut(s)	109, 617, 841, 977, 1086, 1455, 1456
Bme18I	GGWCC	1 cut(s)	1187
BmeT110I	CYCGRG	3 cut(s)	443, 804, 1454
BmgT120I	GGNCC	7 cut(s)	474, 475, 552, 672, 1187, 1457, 1494
BmiI	GGNNCC	7 cut(s)	106, 113, 475, 476, 553, 1510, 1519
BmrFI	CCNGG	7 cut(s)	109, 617, 841, 977, 1086, 1455, 1456
BmsI	GCATC	4 cut(s)	586, 790, 1267, 1364
BoxI	GACNNNNGTC	1 cut(s)	144
BpiI	GAAGAC	1 cut(s)	684
BpmI	CTGGAG	2 cut(s)	139, 347
Bpu10I	CCTNAGC	1 cut(s)	767
Bpu1102I	GCTNAGC	1 cut(s)	1066
Bpu14I	TTCGAA	1 cut(s)	1553
BpuEI	CTTGAG	2 cut(s)	437, 526
BpuMI	CCSGG	5 cut(s)	109, 977, 1086, 1455, 1456
BsaI	GGTCTC	2 cut(s)	440, 1124
BsaJI	CCNNGG	5 cut(s)	493, 840, 906, 1175, 1454
BsaWI	WCCGGW	1 cut(s)	1133
BsaXI	ACNNNNNCTCC	4 cut(s)	35, 65, 1140, 1170
Bsc4I	CCNNNNNNNGG	5 cut(s)	114, 224, 466, 627, 1213
Bse118I	RCCGGY	2 cut(s)	114, 554
Bse1I	ACTGG	2 cut(s)	364, 1207
Bse3DI	GCAATG	2 cut(s)	229, 935
BseBI	CCWGG	2 cut(s)	617, 841
BseDI	CCNNGG	5 cut(s)	493, 840, 906, 1175, 1454
BseGI	GGATG	2 cut(s)	431, 1510
BseLI	CCNNNNNNNGG	5 cut(s)	114, 224, 466, 627, 1213
BseMI	GCAATG	2 cut(s)	229, 935
BseMII	CTCAG	6 cut(s)	591, 629, 705, 758, 1184, 1295
BseNI	ACTGG	2 cut(s)	364, 1207
BseRI	GAGGAG	5 cut(s)	192, 239, 529, 1126, 1142
BseSI	GKGCMC	2 cut(s)	114, 478
BseXI	GCAGC	3 cut(s)	130, 1049, 1535
BseYI	CCCAGC	2 cut(s)	413, 914
BsgI	GTGCAG	1 cut(s)	967
Bsh1236I	CGCG	1 cut(s)	566
BshFI	GGCC	9 cut(s)	92, 476, 529, 554, 620, 673, 1180, 1459, 1496
BshNI	GGYRCC	3 cut(s)	104, 111, 1517
BsiHKAI	GWGCWC	2 cut(s)	48, 1021
BsiHKCI	CYCGRG	3 cut(s)	443, 804, 1454
BsiSI	CCGG	7 cut(s)	108, 115, 555, 977, 1086, 1134, 1455
BslFI	GGGAC	2 cut(s)	352, 887
BslI	CCNNNNNNNGG	5 cut(s)	114, 224, 466, 627, 1213
BsmAI	GTCTC	4 cut(s)	102, 133, 440, 1124
BsmBI	CGTCTC	1 cut(s)	133
BsmFI	GGGAC	2 cut(s)	352, 887
BsnI	GGCC	9 cut(s)	92, 476, 529, 554, 620, 673, 1180, 1459, 1496
Bso31I	GGTCTC	2 cut(s)	440, 1124
BsoBI	CYCGRG	3 cut(s)	443, 804, 1454
Bsp119I	TTCGAA	1 cut(s)	1553
Bsp120I	GGGCCC	1 cut(s)	474
Bsp1286I	GDGCHC	5 cut(s)	48, 114, 478, 1021, 1086
Bsp143I	GATC	1 cut(s)	588
Bsp1720I	GCTNAGC	1 cut(s)	1066
Bsp19I	CCATGG	1 cut(s)	1175
BspACI	CCGC	9 cut(s)	212, 336, 339, 342, 564, 922, 955, 1352, 1521
BspANI	GGCC	9 cut(s)	92, 476, 529, 554, 620, 673, 1180, 1459, 1496
BspCNI	CTCAG	6 cut(s)	592, 630, 706, 759, 1183, 1294
BspFNI	CGCG	1 cut(s)	566
BspLI	GGNNCC	7 cut(s)	106, 113, 475, 476, 553, 1510, 1519
BspPI	GGATC	1 cut(s)	596
BspT104I	TTCGAA	1 cut(s)	1553
BspT107I	GGYRCC	3 cut(s)	104, 111, 1517
BspTNI	GGTCTC	2 cut(s)	440, 1124
BsrDI	GCAATG	2 cut(s)	229, 935
BsrFI	RCCGGY	2 cut(s)	114, 554
BsrI	ACTGG	2 cut(s)	364, 1207
BssAI	RCCGGY	2 cut(s)	114, 554
BssECI	CCNNGG	5 cut(s)	493, 840, 906, 1175, 1454
BssMI	GATC	1 cut(s)	588
BssSI	CACGAG	1 cut(s)	966
BssT1I	CCWWGG	2 cut(s)	906, 1175
Bst2BI	CACGAG	1 cut(s)	966
Bst2UI	CCWGG	2 cut(s)	617, 841
Bst4CI	ACNGT	5 cut(s)	143, 873, 901, 1016, 1035
Bst6I	CTCTTC	5 cut(s)	259, 493, 1260, 1301, 1492
BstAPI	GCANNNNNTGC	1 cut(s)	1203
BstBI	TTCGAA	1 cut(s)	1553
BstC8I	GCNNGC	5 cut(s)	382, 527, 556, 746, 1199
BstDEI	CTNAG	8 cut(s)	164, 600, 638, 714, 767, 1066, 1170, 1281
BstDSI	CCRYGG	1 cut(s)	1175
BstF5I	GGATG	2 cut(s)	431, 1510
BstFNI	CGCG	1 cut(s)	566
BstHHI	GCGC	1 cut(s)	568
BstKTI	GATC	1 cut(s)	591
BstMAI	GTCTC	4 cut(s)	102, 133, 440, 1124
BstMBI	GATC	1 cut(s)	588
BstMWI	GCNNNNNNNGC	7 cut(s)	118, 228, 574, 772, 836, 856, 1203
BstNI	CCWGG	2 cut(s)	617, 841
BstNSI	RCATGY	2 cut(s)	839, 1201
BstPAI	GACNNNNGTC	1 cut(s)	144
BstSCI	CCNGG	7 cut(s)	107, 615, 839, 975, 1084, 1453, 1454
BstSFI	CTRYAG	1 cut(s)	280
BstSLI	GKGCMC	2 cut(s)	114, 478
BstUI	CGCG	1 cut(s)	566
BstV1I	GCAGC	3 cut(s)	130, 1049, 1535
BstV2I	GAAGAC	1 cut(s)	684
BsuRI	GGCC	9 cut(s)	92, 476, 529, 554, 620, 673, 1180, 1459, 1496
BtgI	CCRYGG	1 cut(s)	1175
BtsCI	GGATG	2 cut(s)	431, 1510
BtsI	GCAGTG	2 cut(s)	950, 1113
BtsIMutI	CAGTG	3 cut(s)	950, 1113, 1289
Cac8I	GCNNGC	5 cut(s)	382, 527, 556, 746, 1199
CfoI	GCGC	1 cut(s)	568
Cfr10I	RCCGGY	2 cut(s)	114, 554
Cfr13I	GGNCC	7 cut(s)	474, 475, 552, 672, 1187, 1457, 1494
Cfr9I	CCCGGG	1 cut(s)	1454
CseI	GACGC	2 cut(s)	115, 781
Csp6I	GTAC	2 cut(s)	1046, 1330
CviAII	CATG	7 cut(s)	232, 349, 836, 1176, 1198, 1444, 1491
CviQI	GTAC	2 cut(s)	1046, 1330
DdeI	CTNAG	8 cut(s)	164, 600, 638, 714, 767, 1066, 1170, 1281
DpnI	GATC	1 cut(s)	590
DpnII	GATC	1 cut(s)	588
DrdI	GACNNNNNNGTC	1 cut(s)	980
DseDI	GACNNNNNNGTC	1 cut(s)	980
EaeI	YGGCCR	1 cut(s)	618
Eam1104I	CTCTTC	5 cut(s)	259, 493, 1260, 1301, 1492
EarI	CTCTTC	5 cut(s)	259, 493, 1260, 1301, 1492
EciI	GGCGGA	1 cut(s)	937
Ecl136II	GAGCTC	1 cut(s)	46
Eco130I	CCWWGG	2 cut(s)	906, 1175
Eco147I	AGGCCT	1 cut(s)	529
Eco24I	GRGCYC	3 cut(s)	48, 478, 1086
Eco31I	GGTCTC	2 cut(s)	440, 1124
Eco47I	GGWCC	1 cut(s)	1187
Eco53kI	GAGCTC	1 cut(s)	46
Eco57I	CTGAAG	1 cut(s)	499
Eco88I	CYCGRG	3 cut(s)	443, 804, 1454
EcoICRI	GAGCTC	1 cut(s)	46
EcoO109I	RGGNCCY	1 cut(s)	474
EcoRII	CCWGG	2 cut(s)	615, 839
EcoT14I	CCWWGG	2 cut(s)	906, 1175
EcoT38I	GRGCYC	3 cut(s)	48, 478, 1086
ErhI	CCWWGG	2 cut(s)	906, 1175
Esp3I	CGTCTC	1 cut(s)	133
FaeI	CATG	7 cut(s)	235, 352, 839, 1179, 1201, 1447, 1494
FalI	AAGNNNNNCTT	2 cut(s)	1298, 1330
FaqI	GGGAC	2 cut(s)	352, 887
FatI	CATG	7 cut(s)	231, 348, 835, 1175, 1197, 1443, 1490
FauI	CCCGC	1 cut(s)	948
FauNDI	CATATG	1 cut(s)	1231
FblI	GTMKAC	2 cut(s)	960, 1030
Fnu4HI	GCNGC	7 cut(s)	119, 339, 342, 1063, 1353, 1521, 1524
FokI	GGATG	2 cut(s)	418, 1517
FriOI	GRGCYC	3 cut(s)	48, 478, 1086
Fsp4HI	GCNGC	7 cut(s)	119, 339, 342, 1063, 1353, 1521, 1524
FspBI	CTAG	4 cut(s)	851, 936, 1097, 1539
GlaI	GCGC	1 cut(s)	567
GluI	GCNGC	7 cut(s)	119, 339, 342, 1063, 1353, 1521, 1524
GsaI	CCCAGC	2 cut(s)	417, 918
GsuI	CTGGAG	2 cut(s)	139, 347
HaeIII	GGCC	9 cut(s)	92, 476, 529, 554, 620, 673, 1180, 1459, 1496
HapII	CCGG	7 cut(s)	108, 115, 555, 977, 1086, 1134, 1455
HgaI	GACGC	2 cut(s)	115, 781
HhaI	GCGC	1 cut(s)	568
Hin1II	CATG	7 cut(s)	235, 352, 839, 1179, 1201, 1447, 1494
Hin6I	GCGC	1 cut(s)	566
HinP1I	GCGC	1 cut(s)	566
HincII	GTYRAC	1 cut(s)	973
HindII	GTYRAC	1 cut(s)	973
HinfI	GANTC	2 cut(s)	560, 647
HpaII	CCGG	7 cut(s)	108, 115, 555, 977, 1086, 1134, 1455
HphI	GGTGA	5 cut(s)	149, 161, 257, 420, 1469
Hpy166II	GTNNAC	6 cut(s)	54, 881, 961, 973, 1031, 1258
Hpy188I	TCNGA	2 cut(s)	518, 601
Hpy188III	TCNNGA	3 cut(s)	445, 454, 1502
Hpy8I	GTNNAC	6 cut(s)	54, 881, 961, 973, 1031, 1258
HpyAV	CCTTC	6 cut(s)	24, 203, 385, 464, 523, 1330
HpyCH4III	ACNGT	5 cut(s)	143, 873, 901, 1016, 1035
HpyCH4IV	ACGT	1 cut(s)	1121
HpyCH4V	TGCA	6 cut(s)	79, 948, 1229, 1235, 1377, 1466
HpyF10VI	GCNNNNNNNGC	7 cut(s)	118, 228, 574, 772, 836, 856, 1203
HpyF3I	CTNAG	8 cut(s)	164, 600, 638, 714, 767, 1066, 1170, 1281
HpySE526I	ACGT	1 cut(s)	1121
Hsp92II	CATG	7 cut(s)	235, 352, 839, 1179, 1201, 1447, 1494
HspAI	GCGC	1 cut(s)	566
KroI	GCCGGC	1 cut(s)	554
KroNI	GCCGGC	1 cut(s)	556
Kzo9I	GATC	1 cut(s)	588
LmnI	GCTCC	3 cut(s)	43, 51, 1059
Lsp1109I	GCAGC	3 cut(s)	130, 1049, 1535
LweI	GCATC	4 cut(s)	586, 790, 1267, 1364
MaeI	CTAG	4 cut(s)	851, 936, 1097, 1539
MaeII	ACGT	1 cut(s)	1121
MaeIII	GTNAC	6 cut(s)	137, 149, 167, 719, 727, 1239
MalI	GATC	1 cut(s)	590
MboI	GATC	1 cut(s)	588
MfeI	CAATTG	6 cut(s)	479, 622, 699, 749, 825, 1467
MhlI	GDGCHC	5 cut(s)	48, 114, 478, 1021, 1086
MlsI	TGGCCA	1 cut(s)	620
MluNI	TGGCCA	1 cut(s)	620
MlyI	GAGTC	1 cut(s)	656
MmeI	TCCRAC	3 cut(s)	566, 1165, 1251
Mox20I	TGGCCA	1 cut(s)	620
MroNI	GCCGGC	1 cut(s)	554
MscI	TGGCCA	1 cut(s)	620
MseI	TTAA	1 cut(s)	1025
MslI	CAYNNNNRTG	1 cut(s)	84
Msp20I	TGGCCA	1 cut(s)	620
MspA1I	CMGCKG	2 cut(s)	121, 637
MspI	CCGG	7 cut(s)	108, 115, 555, 977, 1086, 1134, 1455
MspR9I	CCNGG	7 cut(s)	109, 617, 841, 977, 1086, 1455, 1456
MunI	CAATTG	6 cut(s)	479, 622, 699, 749, 825, 1467
MvaI	CCWGG	2 cut(s)	617, 841
MvnI	CGCG	1 cut(s)	566
MwoI	GCNNNNNNNGC	7 cut(s)	118, 228, 574, 772, 836, 856, 1203
NaeI	GCCGGC	1 cut(s)	556
NciI	CCSGG	5 cut(s)	109, 977, 1086, 1455, 1456
NcoI	CCATGG	1 cut(s)	1175
NdeI	CATATG	1 cut(s)	1231
NdeII	GATC	1 cut(s)	588
NgoMIV	GCCGGC	1 cut(s)	554
NlaIII	CATG	7 cut(s)	235, 352, 839, 1179, 1201, 1447, 1494
NlaIV	GGNNCC	7 cut(s)	106, 113, 475, 476, 553, 1510, 1519
NmeAIII	GCCGAG	3 cut(s)	474, 649, 1351
NmuCI	GTSAC	4 cut(s)	137, 149, 167, 1239
NspI	RCATGY	2 cut(s)	839, 1201
NspV	TTCGAA	1 cut(s)	1553
OliI	CACNNNNGTG	1 cut(s)	84
PaeI	GCATGC	1 cut(s)	1201
PaeR7I	CTCGAG	2 cut(s)	443, 804
PceI	AGGCCT	1 cut(s)	529
PdiI	GCCGGC	1 cut(s)	556
PfeI	GAWTC	1 cut(s)	560
PflFI	GACNNNGTC	1 cut(s)	683
PflMI	CCANNNNNTGG	3 cut(s)	224, 466, 1213
PkrI	GCNGC	7 cut(s)	120, 340, 343, 1064, 1354, 1522, 1525
PleI	GAGTC	1 cut(s)	655
PpsI	GAGTC	1 cut(s)	655
PshAI	GACNNNNGTC	1 cut(s)	144
Psp124BI	GAGCTC	1 cut(s)	48
Psp6I	CCWGG	2 cut(s)	615, 839
PspFI	CCCAGC	2 cut(s)	413, 914
PspGI	CCWGG	2 cut(s)	615, 839
PspN4I	GGNNCC	7 cut(s)	106, 113, 475, 476, 553, 1510, 1519
PspOMI	GGGCCC	1 cut(s)	474
PspPI	GGNCC	7 cut(s)	474, 475, 552, 672, 1187, 1457, 1494
PspXI	VCTCGAGB	1 cut(s)	804
PsyI	GACNNNGTC	1 cut(s)	683
PvuII	CAGCTG	2 cut(s)	121, 637
RsaI	GTAC	2 cut(s)	1047, 1331
RsaNI	GTAC	2 cut(s)	1046, 1330
RseI	CAYNNNNRTG	1 cut(s)	84
SacI	GAGCTC	1 cut(s)	48
SaqAI	TTAA	1 cut(s)	1025
SatI	GCNGC	7 cut(s)	119, 339, 342, 1063, 1353, 1521, 1524
Sau3AI	GATC	1 cut(s)	588
Sau96I	GGNCC	7 cut(s)	474, 475, 552, 672, 1187, 1457, 1494
SchI	GAGTC	1 cut(s)	656
ScrFI	CCNGG	7 cut(s)	109, 617, 841, 977, 1086, 1455, 1456
SduI	GDGCHC	5 cut(s)	48, 114, 478, 1021, 1086
SfaNI	GCATC	4 cut(s)	586, 790, 1267, 1364
SfcI	CTRYAG	1 cut(s)	280
Sfr274I	CTCGAG	2 cut(s)	443, 804
SfuI	TTCGAA	1 cut(s)	1553
SinI	GGWCC	1 cut(s)	1187
SlaI	CTCGAG	2 cut(s)	443, 804
SmaI	CCCGGG	1 cut(s)	1456
SmiMI	CAYNNNNRTG	1 cut(s)	84
SmlI	CTYRAG	4 cut(s)	443, 452, 541, 804
SmoI	CTYRAG	4 cut(s)	443, 452, 541, 804
SphI	GCATGC	1 cut(s)	1201
SseBI	AGGCCT	1 cut(s)	529
SsiI	CCGC	9 cut(s)	212, 336, 339, 342, 564, 922, 955, 1352, 1521
SspMI	CTAG	4 cut(s)	851, 936, 1097, 1539
SstI	GAGCTC	1 cut(s)	48
StuI	AGGCCT	1 cut(s)	529
StyD4I	CCNGG	7 cut(s)	107, 615, 839, 975, 1084, 1453, 1454
StyI	CCWWGG	2 cut(s)	906, 1175
TaaI	ACNGT	5 cut(s)	143, 873, 901, 1016, 1035
TaiI	ACGT	1 cut(s)	1124
TaqI	TCGA	5 cut(s)	444, 805, 1039, 1051, 1553
TatI	WGTACW	1 cut(s)	1329
TauI	GCSGC	4 cut(s)	341, 344, 1355, 1523
TfiI	GAWTC	1 cut(s)	560
Tru1I	TTAA	1 cut(s)	1025
Tru9I	TTAA	1 cut(s)	1025
TscAI	CASTG	3 cut(s)	950, 1113, 1289
TseFI	GTSAC	4 cut(s)	137, 149, 167, 1239
TseI	GCWGC	3 cut(s)	118, 1062, 1523
Tsp45I	GTSAC	4 cut(s)	137, 149, 167, 1239
TspDTI	ATGAA	2 cut(s)	48, 1479
TspGWI	ACGGA	1 cut(s)	171
TspMI	CCCGGG	1 cut(s)	1454
TspRI	CASTG	3 cut(s)	950, 1113, 1289
Tth111I	GACNNNGTC	1 cut(s)	683
Van91I	CCANNNNNTGG	3 cut(s)	224, 466, 1213
VpaK11BI	GGWCC	1 cut(s)	1187
XapI	RAATTY	1 cut(s)	1555
XceI	RCATGY	2 cut(s)	839, 1201
XcmI	CCANNNNNNNNNTGG	2 cut(s)	377, 1214
XhoI	CTCGAG	2 cut(s)	443, 804
XmaI	CCCGGG	1 cut(s)	1454
XmiI	GTMKAC	2 cut(s)	960, 1030
XspI	CTAG	4 cut(s)	851, 936, 1097, 1539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.