Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0004000

Physical Location & Seq

Genomic Coordinates Reverse (-)

11493666 .. 11495647

Gene Structure 1982 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGTACAATCGGTTGTCATCGAGAGACTATTCGAATACCATTGACCTGGATACGAAAGAGTTGATGGATCCTCTTGACATGGAAGAAAACTCAGCTCTTGTACAGAAAAGTACAGTTCCAGAACTTTCAAACCCCTCATGGAAGCGATCTTTCCCCCATGTACTTGTGGCAACTCTATCTGCATTCTTGTTTGGCTACCATCTCGGGGTAGTTAATGAACCACTCGAAAGCATTTCTAAAGATCTTGGTTTCAAAGGGAATACCTTGGCAGAAGGTGGTCTGGTGGTGAGTACTTGTTTGGGAGGTGCCTTGGTTGGATCTTTATTCAGTGGATGGTTAGCCGATGGAGTAGGACGTCGTAAGACTTTTCAACTGTGTGCATTGCCTATGATAATTGGTGCTGTTATGAGTGCATCAACCAAAACTCTTGCTGGTATGCTTATAGGAAGGTTATTTGTTGGGACTGGTATGGGACTGGCCCCTCCTGTTGCTTCACTTTATGTGACAGAGGTTTCTCCTGCTTTTGTGAGGGGTACTTATGGCAGTCTCATCCAGATTGCAACATGCCTGGGGATTATGGGAGCTCTTTTTGTTGGAATTCCTGTTAAAGAAATCGCTGGCTGGTGGCGTGTTTGTTTTTGGGTATCGATAATTCCAGCTGTAATACTGGCACTTGCCATGGTATTCTGTGCAGAGAGTCCACATTGGCTACATAAGCAAGGAAGAACTTCTGAGGCAGAAGCTCAATTTGAGAAGCTCCTTGGTGGATCGATCACATGTCAAAACTGCCATGGCAGATTTAGCCAAGTTGGACAGGGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

275

Amino Acids

29.41

Weight (kDa)

7.6

Isoelectric Point (pI)

34.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	54 - 255	2.8e-44	Sugar (and other) transporter
MFS_1	PF07690	60 - 248	1.1e-18	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004000)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67300 AT1G67300 AT1G67300 AT1G67300 AT1G67300 AT1G67300 AT1G67300
fragaria_vesca	FvH4_1g04310 FvH4_1g04310 FvH4_1g04310 FvH4_1g04310 FvH4_1g04310
malus_domestica	MD02G1042800.v1.1 MD15G1181400.v1.1
prunus_persica	Prupe.7G234100_v2.0.a1
pyrus_communis	pycom02g03560 pycom15g16380
rosa_chinensis	RchiOBHm_Chr2g0089961
rosa_laevigata	RLG00000016064
rosa_multiflora	Rmu_sc0002384.1_g000011 Rmu_sc0005594.1_g000018
rosa_roxburghii	Rroxscaffold_2G00151510
rosa_rugosa	Rorug02G0003800 Rorug02G0003900 Rorug02G0004000
rosa_samantha	Rh1AG411000 Rh1AG411600 Rh1AG411800 Rh2AG049200 Rh2BG048100 Rh2CG050200 Rh2DG049300
rosa_wichuraiana	Rw2G004100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	358
AccB1I	GGYRCC	1 cut(s)	305
AclWI	GGATC	4 cut(s)	62, 75, 325, 775
AcsI	RAATTY	1 cut(s)	597
AcyI	GRCGYC	1 cut(s)	355
AfaI	GTAC	6 cut(s)	5, 102, 112, 162, 292, 535
AfiI	CCNNNNNNNGG	1 cut(s)	205
AflIII	ACRYGT	1 cut(s)	776
AgsI	TTSAA	3 cut(s)	129, 253, 371
AjnI	CCWGG	2 cut(s)	45, 567
AluBI	AGCT	5 cut(s)	95, 584, 659, 743, 757
AluI	AGCT	5 cut(s)	95, 584, 659, 743, 757
Alw21I	GWGCWC	1 cut(s)	586
Alw26I	GTCTC	2 cut(s)	18, 551
AlwI	GGATC	4 cut(s)	62, 75, 325, 775
Ama87I	CYCGRG	1 cut(s)	203
AoxI	GGCC	1 cut(s)	477
ApoI	RAATTY	1 cut(s)	597
Asp700I	GAANNNNTTC	1 cut(s)	727
AspS9I	GGNCC	1 cut(s)	478
AsuHPI	GGTGA	1 cut(s)	298
AsuII	TTCGAA	1 cut(s)	32
AvaI	CYCGRG	1 cut(s)	203
BamHI	GGATCC	1 cut(s)	67
BanI	GGYRCC	1 cut(s)	305
BanII	GRGCYC	1 cut(s)	586
Bbv12I	GWGCWC	1 cut(s)	586
BccI	CCATC	4 cut(s)	58, 207, 327, 338
BciT130I	CCWGG	2 cut(s)	47, 569
BciVI	GTATCC	1 cut(s)	43
BcoDI	GTCTC	2 cut(s)	18, 551
BfuI	GTATCC	1 cut(s)	43
BglII	AGATCT	1 cut(s)	241
BmcAI	AGTACT	1 cut(s)	292
Bme1390I	CCNGG	2 cut(s)	47, 569
BmeT110I	CYCGRG	1 cut(s)	203
BmgT120I	GGNCC	1 cut(s)	478
BmiI	GGNNCC	3 cut(s)	69, 307, 480
BmrFI	CCNGG	2 cut(s)	47, 569
BmsI	GCATC	1 cut(s)	422
Bpu14I	TTCGAA	1 cut(s)	32
Bsa29I	ATCGAT	2 cut(s)	647, 770
BsaHI	GRCGYC	1 cut(s)	355
BsaJI	CCNNGG	6 cut(s)	264, 309, 568, 678, 760, 790
Bsc4I	CCNNNNNNNGG	1 cut(s)	205
Bse1I	ACTGG	3 cut(s)	469, 480, 672
Bse3DI	GCAATG	1 cut(s)	380
BseBI	CCWGG	2 cut(s)	47, 569
BseCI	ATCGAT	2 cut(s)	647, 770
BseDI	CCNNGG	6 cut(s)	264, 309, 568, 678, 760, 790
BseGI	GGATG	2 cut(s)	338, 549
BseLI	CCNNNNNNNGG	1 cut(s)	205
BseMI	GCAATG	1 cut(s)	380
BseMII	CTCAG	2 cut(s)	105, 723
BseNI	ACTGG	3 cut(s)	469, 480, 672
BsgI	GTGCAG	1 cut(s)	711
BshFI	GGCC	1 cut(s)	479
BshNI	GGYRCC	1 cut(s)	305
BshVI	ATCGAT	2 cut(s)	647, 770
BsiHKAI	GWGCWC	1 cut(s)	586
BsiHKCI	CYCGRG	1 cut(s)	203
BslFI	GGGAC	2 cut(s)	475, 486
BslI	CCNNNNNNNGG	1 cut(s)	205
BsmAI	GTCTC	2 cut(s)	18, 551
BsmFI	GGGAC	2 cut(s)	475, 486
BsmI	GAATGC	1 cut(s)	182
BsnI	GGCC	1 cut(s)	479
BsoBI	CYCGRG	1 cut(s)	203
Bsp119I	TTCGAA	1 cut(s)	32
Bsp1286I	GDGCHC	1 cut(s)	586
Bsp1407I	TGTACA	2 cut(s)	3, 100
Bsp143I	GATC	6 cut(s)	67, 146, 241, 317, 767, 771
Bsp19I	CCATGG	2 cut(s)	678, 790
BspANI	GGCC	1 cut(s)	479
BspCNI	CTCAG	2 cut(s)	104, 724
BspDI	ATCGAT	2 cut(s)	647, 770
BspLI	GGNNCC	3 cut(s)	69, 307, 480
BspPI	GGATC	4 cut(s)	62, 75, 325, 775
BspT104I	TTCGAA	1 cut(s)	32
BspT107I	GGYRCC	1 cut(s)	305
BsrDI	GCAATG	1 cut(s)	380
BsrGI	TGTACA	2 cut(s)	3, 100
BsrI	ACTGG	3 cut(s)	469, 480, 672
BssECI	CCNNGG	6 cut(s)	264, 309, 568, 678, 760, 790
BssMI	GATC	6 cut(s)	67, 146, 241, 317, 767, 771
BssNI	GRCGYC	1 cut(s)	355
BssT1I	CCWWGG	5 cut(s)	264, 309, 678, 760, 790
Bst2UI	CCWGG	2 cut(s)	47, 569
Bst4CI	ACNGT	2 cut(s)	115, 375
BstACI	GRCGYC	1 cut(s)	355
BstAUI	TGTACA	2 cut(s)	3, 100
BstBI	TTCGAA	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	619
BstDEI	CTNAG	2 cut(s)	91, 732
BstDSI	CCRYGG	2 cut(s)	678, 790
BstF5I	GGATG	2 cut(s)	338, 549
BstKTI	GATC	6 cut(s)	70, 149, 244, 320, 770, 774
BstMAI	GTCTC	2 cut(s)	18, 551
BstMBI	GATC	6 cut(s)	67, 146, 241, 317, 767, 771
BstMWI	GCNNNNNNNGC	2 cut(s)	715, 801
BstNI	CCWGG	2 cut(s)	47, 569
BstNSI	RCATGY	2 cut(s)	567, 780
BstSCI	CCNGG	2 cut(s)	45, 567
BstX2I	RGATCY	3 cut(s)	67, 241, 317
BstXI	CCANNNNNNTGG	1 cut(s)	46
BstYI	RGATCY	3 cut(s)	67, 241, 317
Bsu15I	ATCGAT	2 cut(s)	647, 770
BsuI	GTATCC	1 cut(s)	43
BsuRI	GGCC	1 cut(s)	479
BsuTUI	ATCGAT	2 cut(s)	647, 770
BtgI	CCRYGG	2 cut(s)	678, 790
BtsCI	GGATG	2 cut(s)	338, 549
BtsIMutI	CAGTG	1 cut(s)	334
Cac8I	GCNNGC	1 cut(s)	619
Cfr13I	GGNCC	1 cut(s)	478
ClaI	ATCGAT	2 cut(s)	647, 770
Csp6I	GTAC	6 cut(s)	4, 101, 111, 161, 291, 534
CviAII	CATG	7 cut(s)	79, 138, 158, 564, 679, 777, 791
CviQI	GTAC	6 cut(s)	4, 101, 111, 161, 291, 534
DdeI	CTNAG	2 cut(s)	91, 732
DpnI	GATC	6 cut(s)	69, 148, 243, 319, 769, 773
DpnII	GATC	6 cut(s)	67, 146, 241, 317, 767, 771
Ecl136II	GAGCTC	1 cut(s)	584
Eco130I	CCWWGG	5 cut(s)	264, 309, 678, 760, 790
Eco24I	GRGCYC	1 cut(s)	586
Eco53kI	GAGCTC	1 cut(s)	584
Eco88I	CYCGRG	1 cut(s)	203
EcoICRI	GAGCTC	1 cut(s)	584
EcoRI	GAATTC	1 cut(s)	597
EcoRII	CCWGG	2 cut(s)	45, 567
EcoT14I	CCWWGG	5 cut(s)	264, 309, 678, 760, 790
EcoT38I	GRGCYC	1 cut(s)	586
ErhI	CCWWGG	5 cut(s)	264, 309, 678, 760, 790
FaeI	CATG	7 cut(s)	82, 141, 161, 567, 682, 780, 794
FaqI	GGGAC	2 cut(s)	475, 486
FatI	CATG	7 cut(s)	78, 137, 157, 563, 678, 776, 790
FokI	GGATG	2 cut(s)	345, 536
FriOI	GRGCYC	1 cut(s)	586
HaeIII	GGCC	1 cut(s)	479
Hin1I	GRCGYC	1 cut(s)	355
Hin1II	CATG	7 cut(s)	82, 141, 161, 567, 682, 780, 794
HinfI	GANTC	1 cut(s)	697
HphI	GGTGA	1 cut(s)	298
Hpy166II	GTNNAC	1 cut(s)	701
Hpy188I	TCNGA	1 cut(s)	733
Hpy188III	TCNNGA	4 cut(s)	21, 74, 119, 553
Hpy8I	GTNNAC	1 cut(s)	701
Hpy99I	CGWCG	1 cut(s)	360
HpyAV	CCTTC	2 cut(s)	266, 441
HpyCH4III	ACNGT	2 cut(s)	115, 375
HpyCH4IV	ACGT	1 cut(s)	355
HpyCH4V	TGCA	5 cut(s)	182, 380, 413, 560, 692
HpyF10VI	GCNNNNNNNGC	2 cut(s)	715, 801
HpyF3I	CTNAG	2 cut(s)	91, 732
HpySE526I	ACGT	1 cut(s)	355
Hsp92I	GRCGYC	1 cut(s)	355
Hsp92II	CATG	7 cut(s)	82, 141, 161, 567, 682, 780, 794
Kzo9I	GATC	6 cut(s)	67, 146, 241, 317, 767, 771
LmnI	GCTCC	2 cut(s)	581, 762
LweI	GCATC	1 cut(s)	422
MaeII	ACGT	1 cut(s)	355
MaeIII	GTNAC	1 cut(s)	502
MalI	GATC	6 cut(s)	69, 148, 243, 319, 769, 773
MboI	GATC	6 cut(s)	67, 146, 241, 317, 767, 771
MboII	GAAGA	2 cut(s)	95, 735
MflI	RGATCY	3 cut(s)	67, 241, 317
MhlI	GDGCHC	1 cut(s)	586
MluCI	AATT	4 cut(s)	393, 597, 651, 746
MlyI	GAGTC	1 cut(s)	706
MmeI	TCCRAC	3 cut(s)	295, 574, 790
MnlI	CCTC	7 cut(s)	81, 145, 296, 492, 502, 522, 727
MroXI	GAANNNNTTC	1 cut(s)	727
MseI	TTAA	2 cut(s)	213, 606
MspA1I	CMGCKG	1 cut(s)	659
MspR9I	CCNGG	2 cut(s)	47, 569
Mva1269I	GAATGC	1 cut(s)	182
MvaI	CCWGG	2 cut(s)	47, 569
MwoI	GCNNNNNNNGC	2 cut(s)	715, 801
NcoI	CCATGG	2 cut(s)	678, 790
NdeII	GATC	6 cut(s)	67, 146, 241, 317, 767, 771
NlaIII	CATG	7 cut(s)	82, 141, 161, 567, 682, 780, 794
NlaIV	GGNNCC	3 cut(s)	69, 307, 480
NmuCI	GTSAC	1 cut(s)	502
NspI	RCATGY	2 cut(s)	567, 780
NspV	TTCGAA	1 cut(s)	32
PciI	ACATGT	1 cut(s)	776
PctI	GAATGC	1 cut(s)	182
PdmI	GAANNNNTTC	1 cut(s)	727
PleI	GAGTC	1 cut(s)	705
PpsI	GAGTC	1 cut(s)	705
PscI	ACATGT	1 cut(s)	776
Psp124BI	GAGCTC	1 cut(s)	586
Psp6I	CCWGG	2 cut(s)	45, 567
PspGI	CCWGG	2 cut(s)	45, 567
PspN4I	GGNNCC	3 cut(s)	69, 307, 480
PspPI	GGNCC	1 cut(s)	478
PsuI	RGATCY	3 cut(s)	67, 241, 317
PvuII	CAGCTG	1 cut(s)	659
RsaI	GTAC	6 cut(s)	5, 102, 112, 162, 292, 535
RsaNI	GTAC	6 cut(s)	4, 101, 111, 161, 291, 534
SacI	GAGCTC	1 cut(s)	586
SaqAI	TTAA	2 cut(s)	213, 606
Sau3AI	GATC	6 cut(s)	67, 146, 241, 317, 767, 771
Sau96I	GGNCC	1 cut(s)	478
ScaI	AGTACT	1 cut(s)	292
SchI	GAGTC	1 cut(s)	706
ScrFI	CCNGG	2 cut(s)	47, 569
SduI	GDGCHC	1 cut(s)	586
SfaNI	GCATC	1 cut(s)	422
SfuI	TTCGAA	1 cut(s)	32
Sse9I	AATT	4 cut(s)	393, 597, 651, 746
SstI	GAGCTC	1 cut(s)	586
StyD4I	CCNGG	2 cut(s)	45, 567
StyI	CCWWGG	5 cut(s)	264, 309, 678, 760, 790
TaaI	ACNGT	2 cut(s)	115, 375
TaiI	ACGT	1 cut(s)	358
TaqI	TCGA	5 cut(s)	20, 32, 225, 647, 770
TasI	AATT	4 cut(s)	393, 597, 651, 746
TatI	WGTACW	5 cut(s)	3, 100, 110, 160, 290
Tru1I	TTAA	2 cut(s)	213, 606
Tru9I	TTAA	2 cut(s)	213, 606
TscAI	CASTG	1 cut(s)	334
TseFI	GTSAC	1 cut(s)	502
Tsp45I	GTSAC	1 cut(s)	502
TspDTI	ATGAA	1 cut(s)	231
TspRI	CASTG	1 cut(s)	334
XapI	RAATTY	1 cut(s)	597
XceI	RCATGY	2 cut(s)	567, 780
XmnI	GAANNNNTTC	1 cut(s)	727
ZraI	GACGTC	1 cut(s)	356
ZrmI	AGTACT	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.