Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0007707

Physical Location & Seq

Genomic Coordinates Forward (+)

11497049 .. 11498205

Gene Structure 1157 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGCCATAAAAAGTGCAGCCCTTTTCCATAATTTCACAAAAATTCTCACACCAAATTTAGGGCATTGCATTACGCTCTTACCTTTTTCTCGCGTCTCATCGCTATCGAACAGCGAAGCGCACAGGACGATGGGGTCAAGGGACAAAGACCCAAAGGCACCGCATCATCAGCCTCTTCTCAGCAGCCTCGTCGTGCGGCCCTCCACCAGCGACGGCACTGGTGGTGGAGGCGGTCGACGTAGCAGCGATTACGAGCCCGGCGAGGTTCGCCACGAGCCTCCTCCCTACACTCGTTCGGATCGTTACTCTGATGACCCTGCTCTGAATGTGCCCGCAAGAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1901796 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko05202 map03022 map05202

Pfam Domains

Protein Families

zf-RanBP

Protein Analysis

115

Amino Acids

12.38

Weight (kDa)

9.35

Isoelectric Point (pI)

56.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007707)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28990 AT4G28990
fragaria_vesca	FvH4_1g04330
malus_domestica	MD02G1042900.v1.1 MD15G1181500.v1.1 MD15G1181700.v1.1
prunus_persica	Prupe.7G234000_v2.0.a1 Prupe.7G234000_v2.0.a1 Prupe.7G234000_v2.0.a1
pyrus_communis	pycom02g03570 pycom15g16390
rosa_chinensis	RchiOBHm_Chr2g0088791 RchiOBHm_Chr2g0088801 RchiOBHm_Chr2g0089981
rosa_laevigata	RLG00000016065
rosa_multiflora	Rmu_sc0000226.1_g000022
rosa_roxburghii	Rroxscaffold_2G00151490
rosa_rugosa	Rorug02G0004100
rosa_samantha	Rh2AG049300 Rh2AG049400 Rh2BG048200 Rh2CG050400 Rh2DG049500
rosa_wichuraiana	Rw2G004090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	133
AccB1I	GGYRCC	1 cut(s)	157
AccI	GTMKAC	1 cut(s)	235
AccII	CGCG	1 cut(s)	93
AciI	CCGC	4 cut(s)	161, 196, 231, 333
AclWI	GGATC	1 cut(s)	306
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	42, 55
AfiI	CCNNNNNNNGG	1 cut(s)	59
Alw26I	GTCTC	1 cut(s)	100
AlwI	GGATC	1 cut(s)	306
AoxI	GGCC	2 cut(s)	3, 197
ApeKI	GCWGC	3 cut(s)	17, 183, 243
ApoI	RAATTY	2 cut(s)	42, 55
AspLEI	GCGC	1 cut(s)	121
AspS9I	GGNCC	1 cut(s)	198
AsuC2I	CCSGG	1 cut(s)	258
BaeGI	GKGCMC	1 cut(s)	333
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	157
BanII	GRGCYC	1 cut(s)	258
BauI	CACGAG	1 cut(s)	272
BbvI	GCAGC	3 cut(s)	29, 195, 255
BccI	CCATC	1 cut(s)	124
BceAI	ACGGC	1 cut(s)	229
BcgI	CGANNNNNNTGC	2 cut(s)	172, 206
BcnI	CCSGG	1 cut(s)	258
BcoDI	GTCTC	1 cut(s)	100
BisI	GCNGC	4 cut(s)	18, 184, 197, 244
BlsI	GCNGC	4 cut(s)	19, 185, 198, 245
Bme1390I	CCNGG	1 cut(s)	258
BmgT120I	GGNCC	1 cut(s)	198
BmiI	GGNNCC	1 cut(s)	159
BmrFI	CCNGG	1 cut(s)	258
BmsI	GCATC	1 cut(s)	172
BpuMI	CCSGG	1 cut(s)	258
Bsc4I	CCNNNNNNNGG	1 cut(s)	59
Bse1I	ACTGG	1 cut(s)	223
Bse3DI	GCAATG	1 cut(s)	64
BseLI	CCNNNNNNNGG	1 cut(s)	59
BseMI	GCAATG	1 cut(s)	64
BseMII	CTCAG	1 cut(s)	193
BseNI	ACTGG	1 cut(s)	223
BseRI	GAGGAG	1 cut(s)	270
BseSI	GKGCMC	1 cut(s)	333
BseXI	GCAGC	3 cut(s)	29, 195, 255
BsgI	GTGCAG	1 cut(s)	36
Bsh1236I	CGCG	1 cut(s)	93
Bsh1285I	CGRYCG	1 cut(s)	235
BshFI	GGCC	2 cut(s)	5, 199
BshNI	GGYRCC	1 cut(s)	157
BsiEI	CGRYCG	1 cut(s)	235
BsiSI	CCGG	1 cut(s)	258
BslFI	GGGAC	1 cut(s)	155
BslI	CCNNNNNNNGG	1 cut(s)	59
BsmAI	GTCTC	1 cut(s)	100
BsmBI	CGTCTC	1 cut(s)	100
BsmFI	GGGAC	1 cut(s)	155
BsnI	GGCC	2 cut(s)	5, 199
Bsp1286I	GDGCHC	2 cut(s)	258, 333
Bsp143I	GATC	1 cut(s)	298
BspACI	CCGC	4 cut(s)	161, 196, 231, 333
BspANI	GGCC	2 cut(s)	5, 199
BspCNI	CTCAG	1 cut(s)	192
BspFNI	CGCG	1 cut(s)	93
BspLI	GGNNCC	1 cut(s)	159
BspPI	GGATC	1 cut(s)	306
BspT107I	GGYRCC	1 cut(s)	157
BsrDI	GCAATG	1 cut(s)	64
BsrI	ACTGG	1 cut(s)	223
BssMI	GATC	1 cut(s)	298
BssSI	CACGAG	1 cut(s)	272
Bst2BI	CACGAG	1 cut(s)	272
Bst6I	CTCTTC	1 cut(s)	180
BstC8I	GCNNGC	1 cut(s)	333
BstDEI	CTNAG	1 cut(s)	179
BstFNI	CGCG	1 cut(s)	93
BstHHI	GCGC	1 cut(s)	121
BstKTI	GATC	1 cut(s)	301
BstMAI	GTCTC	1 cut(s)	100
BstMBI	GATC	1 cut(s)	298
BstMCI	CGRYCG	1 cut(s)	235
BstMWI	GCNNNNNNNGC	2 cut(s)	169, 267
BstSCI	CCNGG	1 cut(s)	256
BstSLI	GKGCMC	1 cut(s)	333
BstUI	CGCG	1 cut(s)	93
BstV1I	GCAGC	3 cut(s)	29, 195, 255
BsuRI	GGCC	2 cut(s)	5, 199
BtgZI	GCGATG	1 cut(s)	84
BtsIMutI	CAGTG	1 cut(s)	216
Cac8I	GCNNGC	1 cut(s)	333
CfoI	GCGC	1 cut(s)	121
Cfr13I	GGNCC	1 cut(s)	198
CseI	GACGC	1 cut(s)	82
CviAII	CATG	1 cut(s)	342
CviJI	RGCY	7 cut(s)	5, 20, 172, 186, 199, 256, 277
CviKI_1	RGCY	7 cut(s)	5, 20, 172, 186, 199, 256, 277
DdeI	CTNAG	1 cut(s)	179
DpnI	GATC	1 cut(s)	300
DpnII	GATC	1 cut(s)	298
DrdI	GACNNNNNNGTC	1 cut(s)	133
DseDI	GACNNNNNNGTC	1 cut(s)	133
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
Eco24I	GRGCYC	1 cut(s)	258
EcoT38I	GRGCYC	1 cut(s)	258
Esp3I	CGTCTC	1 cut(s)	100
FaeI	CATG	1 cut(s)	345
FaiI	YATR	3 cut(s)	8, 30, 343
FaqI	GGGAC	1 cut(s)	155
FatI	CATG	1 cut(s)	341
FauI	CCCGC	1 cut(s)	340
FblI	GTMKAC	1 cut(s)	235
Fnu4HI	GCNGC	4 cut(s)	18, 184, 197, 244
FriOI	GRGCYC	1 cut(s)	258
Fsp4HI	GCNGC	4 cut(s)	18, 184, 197, 244
GlaI	GCGC	1 cut(s)	120
GluI	GCNGC	4 cut(s)	18, 184, 197, 244
HaeIII	GGCC	2 cut(s)	5, 199
HapII	CCGG	1 cut(s)	258
HgaI	GACGC	1 cut(s)	82
HhaI	GCGC	1 cut(s)	121
Hin1II	CATG	1 cut(s)	345
Hin6I	GCGC	1 cut(s)	119
HinP1I	GCGC	1 cut(s)	119
HincII	GTYRAC	1 cut(s)	236
HindII	GTYRAC	1 cut(s)	236
HpaII	CCGG	1 cut(s)	258
Hpy166II	GTNNAC	1 cut(s)	236
Hpy188I	TCNGA	3 cut(s)	298, 310, 324
Hpy8I	GTNNAC	1 cut(s)	236
Hpy99I	CGWCG	3 cut(s)	194, 215, 240
HpyCH4IV	ACGT	1 cut(s)	238
HpyCH4V	TGCA	2 cut(s)	17, 69
HpyF10VI	GCNNNNNNNGC	2 cut(s)	169, 267
HpyF3I	CTNAG	1 cut(s)	179
HpySE526I	ACGT	1 cut(s)	238
Hsp92II	CATG	1 cut(s)	345
HspAI	GCGC	1 cut(s)	119
Kzo9I	GATC	1 cut(s)	298
LpnPI	CCDG	5 cut(s)	109, 204, 220, 271, 330
Lsp1109I	GCAGC	3 cut(s)	29, 195, 255
LweI	GCATC	1 cut(s)	172
MaeII	ACGT	1 cut(s)	238
MaeIII	GTNAC	1 cut(s)	302
MalI	GATC	1 cut(s)	300
MboI	GATC	1 cut(s)	298
MboII	GAAGA	1 cut(s)	167
MhlI	GDGCHC	2 cut(s)	258, 333
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	31, 42, 55
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	7 cut(s)	183, 197, 211, 221, 256, 288, 291
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	258
MspR9I	CCNGG	1 cut(s)	258
MvnI	CGCG	1 cut(s)	93
MwoI	GCNNNNNNNGC	2 cut(s)	169, 267
NciI	CCSGG	1 cut(s)	258
NdeII	GATC	1 cut(s)	298
NlaIII	CATG	1 cut(s)	345
NlaIV	GGNNCC	1 cut(s)	159
PcsI	WCGNNNNNNNCGW	2 cut(s)	258, 298
PkrI	GCNGC	4 cut(s)	19, 185, 198, 245
PspN4I	GGNNCC	1 cut(s)	159
PspPI	GGNCC	1 cut(s)	198
SalI	GTCGAC	1 cut(s)	234
SatI	GCNGC	4 cut(s)	18, 184, 197, 244
Sau3AI	GATC	1 cut(s)	298
Sau96I	GGNCC	1 cut(s)	198
ScrFI	CCNGG	1 cut(s)	258
SduI	GDGCHC	2 cut(s)	258, 333
SetI	ASST	3 cut(s)	85, 241, 267
SfaNI	GCATC	1 cut(s)	172
Sse9I	AATT	3 cut(s)	31, 42, 55
SsiI	CCGC	4 cut(s)	161, 196, 231, 333
StyD4I	CCNGG	1 cut(s)	256
TaiI	ACGT	1 cut(s)	241
TaqI	TCGA	2 cut(s)	107, 235
TasI	AATT	3 cut(s)	31, 42, 55
TauI	GCSGC	1 cut(s)	199
TscAI	CASTG	1 cut(s)	223
TseI	GCWGC	3 cut(s)	17, 183, 243
TspRI	CASTG	1 cut(s)	223
XapI	RAATTY	2 cut(s)	42, 55
XmiI	GTMKAC	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.