Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0007592

Physical Location & Seq

Genomic Coordinates Reverse (-)

12563331 .. 12564252

Gene Structure 922 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGTCTTGGCAAACGTACGTCGATGACCATCTGATGTGCGAAATCGAAGGCAACCACCTCTCCGCCGCAGCCATCATCGGCCACGACGGCAGCGTCTGGGCCCAGAGCGCCACCTTCCCTCAGTTGAAGCCTGAGGAGGTGACTGGCATTATGAATGACTTCAATGAGCCGGGTTCACTTGCTCCGACCGGGCTGTATCTTGGAGGGACCAAATACATGGTGATCCAGGGTGAACCAGGAGTTGTGATTCGAGGAAAGAAGGGCCCTGGTGGTGTCACTGTGAAGAAGAGCACTATGGCTTTGCTGATCGGGATTTATGATGAGCCGATGACTGCTGGCCAATGCAACATGGTTGTCGAGAGGCTTGGGGATTATCTCATTGAGCAGGGTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0003785 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005938 GO:0008064 GO:0008092 GO:0008104 GO:0008150 GO:0009987 GO:0010639 GO:0015629 GO:0016043 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032507 GO:0032535 GO:0032956 GO:0032970 GO:0033036 GO:0033043 GO:0034613 GO:0042989 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0045185 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051179 GO:0051235 GO:0051493 GO:0051494 GO:0051641 GO:0051651 GO:0065007 GO:0065008 GO:0070727 GO:0071840 GO:0071944 GO:0090066 GO:0099568 GO:0110053 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

ko04013 ko04015 ko04810 ko05131 ko05132 map04013 map04015 map04810 map05131 map05132

Pfam Domains

Protein Families

Profilin

Protein Analysis

132

Amino Acids

14.06

Weight (kDa)

4.73

Isoelectric Point (pI)

34.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Profilin	PF00235	1 - 131	7.1e-44	Profilin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007592)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19760 AT4G29350 AT5G56600 AT5G56600
fragaria_vesca	FvH4_1g06461
malus_domestica	MD02G1067900.v1.1 MD15G1199500.v1.1
prunus_persica	Prupe.7G217700_v2.0.a1 Prupe.7G217700_v2.0.a1
pyrus_communis	pycom15g17700
rosa_chinensis	RchiOBHm_Chr2g0092211
rosa_laevigata	RLG00000016286
rosa_multiflora	Rmu_sc0000524.1_g000024 Rmu_sc0005722.1_g000009
rosa_roxburghii	Rroxscaffold_2G00149370
rosa_rugosa	Rorug02G0023700
rosa_samantha	Rh2BG069000 Rh4DG181000 Rh5DG465700
rosa_wichuraiana	Rw2G006270 Rw3G005780 Rw5G025200 Rw5G032250 Rw6G007270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	92
AciI	CCGC	2 cut(s)	63, 66
AclWI	GGATC	1 cut(s)	217
AcoI	YGGCCR	2 cut(s)	79, 337
AfaI	GTAC	1 cut(s)	17
AgsI	TTSAA	2 cut(s)	127, 163
AjnI	CCWGG	3 cut(s)	225, 235, 265
Alw21I	GWGCWC	1 cut(s)	293
AlwI	GGATC	1 cut(s)	217
AlwNI	CAGNNNCTG	1 cut(s)	96
AoxI	GGCC	4 cut(s)	79, 99, 262, 337
ApaI	GGGCCC	2 cut(s)	103, 266
ApeKI	GCWGC	2 cut(s)	68, 90
Asp700I	GAANNNNTTC	1 cut(s)	158
AspLEI	GCGC	1 cut(s)	110
AspS9I	GGNCC	5 cut(s)	99, 100, 207, 262, 263
AsuC2I	CCSGG	2 cut(s)	171, 190
AsuHPI	GGTGA	3 cut(s)	151, 232, 242
AvaII	GGWCC	1 cut(s)	207
AxyI	CCTNAGG	1 cut(s)	132
BaeGI	GKGCMC	2 cut(s)	103, 266
BalI	TGGCCA	1 cut(s)	339
BanII	GRGCYC	2 cut(s)	103, 266
Bbv12I	GWGCWC	1 cut(s)	293
BbvI	GCAGC	2 cut(s)	80, 102
BccI	CCATC	2 cut(s)	36, 80
BceAI	ACGGC	1 cut(s)	103
BciT130I	CCWGG	3 cut(s)	227, 237, 267
BcnI	CCSGG	2 cut(s)	171, 190
BfaI	CTAG	1 cut(s)	394
BfoI	RGCGCY	1 cut(s)	111
BglI	GCCNNNNNGGC	1 cut(s)	87
BisI	GCNGC	3 cut(s)	66, 69, 91
BlsI	GCNGC	3 cut(s)	67, 70, 92
Bme1390I	CCNGG	5 cut(s)	171, 190, 227, 237, 267
Bme18I	GGWCC	1 cut(s)	207
BmgT120I	GGNCC	5 cut(s)	99, 100, 207, 262, 263
BmiI	GGNNCC	3 cut(s)	101, 208, 264
BmrFI	CCNGG	5 cut(s)	171, 190, 227, 237, 267
BpuMI	CCSGG	2 cut(s)	171, 190
BsaBI	GATNNNNATC	1 cut(s)	27
BsaJI	CCNNGG	2 cut(s)	226, 265
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bse1I	ACTGG	1 cut(s)	148
Bse21I	CCTNAGG	1 cut(s)	132
Bse8I	GATNNNNATC	1 cut(s)	27
BseBI	CCWGG	3 cut(s)	227, 237, 267
BseDI	CCNNGG	2 cut(s)	226, 265
BseJI	GATNNNNATC	1 cut(s)	27
BseMII	CTCAG	2 cut(s)	123, 134
BseNI	ACTGG	1 cut(s)	148
BseRI	GAGGAG	1 cut(s)	149
BseSI	GKGCMC	2 cut(s)	103, 266
BseXI	GCAGC	2 cut(s)	80, 102
Bsh1285I	CGRYCG	1 cut(s)	189
BshFI	GGCC	4 cut(s)	81, 101, 264, 339
BsiEI	CGRYCG	1 cut(s)	189
BsiHKAI	GWGCWC	1 cut(s)	293
BsiSI	CCGG	2 cut(s)	170, 189
BsiWI	CGTACG	1 cut(s)	15
BslFI	GGGAC	1 cut(s)	220
BsmFI	GGGAC	1 cut(s)	220
BsnI	GGCC	4 cut(s)	81, 101, 264, 339
Bsp120I	GGGCCC	2 cut(s)	99, 262
Bsp1286I	GDGCHC	3 cut(s)	103, 266, 293
Bsp143I	GATC	2 cut(s)	222, 306
BspACI	CCGC	2 cut(s)	63, 66
BspANI	GGCC	4 cut(s)	81, 101, 264, 339
BspCNI	CTCAG	2 cut(s)	124, 133
BspLI	GGNNCC	3 cut(s)	101, 208, 264
BspPI	GGATC	1 cut(s)	217
BspQI	GCTCTTC	1 cut(s)	281
BsrI	ACTGG	1 cut(s)	148
BssECI	CCNNGG	2 cut(s)	226, 265
BssMI	GATC	2 cut(s)	222, 306
Bst2UI	CCWGG	3 cut(s)	227, 237, 267
Bst4CI	ACNGT	1 cut(s)	280
Bst6I	CTCTTC	1 cut(s)	281
BstC8I	GCNNGC	1 cut(s)	337
BstDEI	CTNAG	2 cut(s)	120, 132
BstH2I	RGCGCY	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	2 cut(s)	225, 309
BstMBI	GATC	2 cut(s)	222, 306
BstMCI	CGRYCG	1 cut(s)	189
BstMWI	GCNNNNNNNGC	2 cut(s)	87, 107
BstNI	CCWGG	3 cut(s)	227, 237, 267
BstSCI	CCNGG	5 cut(s)	169, 188, 225, 235, 265
BstSLI	GKGCMC	2 cut(s)	103, 266
BstV1I	GCAGC	2 cut(s)	80, 102
BstXI	CCANNNNNNTGG	1 cut(s)	217
Bsu36I	CCTNAGG	1 cut(s)	132
BsuRI	GGCC	4 cut(s)	81, 101, 264, 339
BtsIMutI	CAGTG	1 cut(s)	276
Cac8I	GCNNGC	1 cut(s)	337
CaiI	CAGNNNCTG	1 cut(s)	96
CfoI	GCGC	1 cut(s)	110
Cfr13I	GGNCC	5 cut(s)	99, 100, 207, 262, 263
CseI	GACGC	1 cut(s)	82
Csp6I	GTAC	1 cut(s)	16
CviAII	CATG	2 cut(s)	217, 349
CviQI	GTAC	1 cut(s)	16
DdeI	CTNAG	2 cut(s)	120, 132
DpnI	GATC	2 cut(s)	224, 308
DpnII	GATC	2 cut(s)	222, 306
DrdI	GACNNNNNNGTC	1 cut(s)	92
DseDI	GACNNNNNNGTC	1 cut(s)	92
EaeI	YGGCCR	2 cut(s)	79, 337
Eam1104I	CTCTTC	1 cut(s)	281
EarI	CTCTTC	1 cut(s)	281
EciI	GGCGGA	1 cut(s)	52
Eco24I	GRGCYC	2 cut(s)	103, 266
Eco47I	GGWCC	1 cut(s)	207
Eco81I	CCTNAGG	1 cut(s)	132
EcoO109I	RGGNCCY	2 cut(s)	262, 263
EcoRII	CCWGG	3 cut(s)	225, 235, 265
EcoT38I	GRGCYC	2 cut(s)	103, 266
FaeI	CATG	2 cut(s)	220, 352
FaiI	YATR	5 cut(s)	152, 218, 296, 318, 350
FaqI	GGGAC	1 cut(s)	220
FatI	CATG	2 cut(s)	216, 348
Fnu4HI	GCNGC	3 cut(s)	66, 69, 91
FriOI	GRGCYC	2 cut(s)	103, 266
Fsp4HI	GCNGC	3 cut(s)	66, 69, 91
FspBI	CTAG	1 cut(s)	394
GlaI	GCGC	1 cut(s)	109
GluI	GCNGC	3 cut(s)	66, 69, 91
HaeII	RGCGCY	1 cut(s)	111
HaeIII	GGCC	4 cut(s)	81, 101, 264, 339
HapII	CCGG	2 cut(s)	170, 189
HgaI	GACGC	1 cut(s)	82
HhaI	GCGC	1 cut(s)	110
Hin1II	CATG	2 cut(s)	220, 352
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HinfI	GANTC	1 cut(s)	247
HpaII	CCGG	2 cut(s)	170, 189
HphI	GGTGA	3 cut(s)	151, 232, 242
Hpy166II	GTNNAC	2 cut(s)	176, 233
Hpy188I	TCNGA	2 cut(s)	33, 186
Hpy188III	TCNNGA	2 cut(s)	310, 358
Hpy8I	GTNNAC	2 cut(s)	176, 233
Hpy99I	CGWCG	2 cut(s)	23, 89
HpyAV	CCTTC	3 cut(s)	41, 124, 253
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4IV	ACGT	2 cut(s)	14, 18
HpyCH4V	TGCA	1 cut(s)	345
HpyF10VI	GCNNNNNNNGC	2 cut(s)	87, 107
HpyF3I	CTNAG	2 cut(s)	120, 132
HpySE526I	ACGT	2 cut(s)	14, 18
Hsp92II	CATG	2 cut(s)	220, 352
HspAI	GCGC	1 cut(s)	108
Kzo9I	GATC	2 cut(s)	222, 306
LguI	GCTCTTC	1 cut(s)	281
LmnI	GCTCC	1 cut(s)	187
Lsp1109I	GCAGC	2 cut(s)	80, 102
MaeI	CTAG	1 cut(s)	394
MaeII	ACGT	2 cut(s)	14, 18
MaeIII	GTNAC	2 cut(s)	139, 274
MalI	GATC	2 cut(s)	224, 308
MboI	GATC	2 cut(s)	222, 306
MboII	GAAGA	2 cut(s)	295, 298
MhlI	GDGCHC	3 cut(s)	103, 266, 293
MlsI	TGGCCA	1 cut(s)	339
MluNI	TGGCCA	1 cut(s)	339
MmeI	TCCRAC	1 cut(s)	209
MnlI	CCTC	7 cut(s)	68, 127, 129, 130, 197, 245, 354
Mox20I	TGGCCA	1 cut(s)	339
MroXI	GAANNNNTTC	1 cut(s)	158
MscI	TGGCCA	1 cut(s)	339
Msp20I	TGGCCA	1 cut(s)	339
MspI	CCGG	2 cut(s)	170, 189
MspR9I	CCNGG	5 cut(s)	171, 190, 227, 237, 267
MvaI	CCWGG	3 cut(s)	227, 237, 267
MwoI	GCNNNNNNNGC	2 cut(s)	87, 107
NciI	CCSGG	2 cut(s)	171, 190
NdeII	GATC	2 cut(s)	222, 306
NlaIII	CATG	2 cut(s)	220, 352
NlaIV	GGNNCC	3 cut(s)	101, 208, 264
NmuCI	GTSAC	2 cut(s)	139, 274
PciSI	GCTCTTC	1 cut(s)	281
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PdmI	GAANNNNTTC	1 cut(s)	158
PfeI	GAWTC	1 cut(s)	247
Pfl23II	CGTACG	1 cut(s)	15
PkrI	GCNGC	3 cut(s)	67, 70, 92
Psp6I	CCWGG	3 cut(s)	225, 235, 265
PspGI	CCWGG	3 cut(s)	225, 235, 265
PspLI	CGTACG	1 cut(s)	15
PspN4I	GGNNCC	3 cut(s)	101, 208, 264
PspOMI	GGGCCC	2 cut(s)	99, 262
PspPI	GGNCC	5 cut(s)	99, 100, 207, 262, 263
PstNI	CAGNNNCTG	1 cut(s)	96
RsaI	GTAC	1 cut(s)	17
RsaNI	GTAC	1 cut(s)	16
SapI	GCTCTTC	1 cut(s)	281
SatI	GCNGC	3 cut(s)	66, 69, 91
Sau3AI	GATC	2 cut(s)	222, 306
Sau96I	GGNCC	5 cut(s)	99, 100, 207, 262, 263
ScrFI	CCNGG	5 cut(s)	171, 190, 227, 237, 267
SduI	GDGCHC	3 cut(s)	103, 266, 293
SetI	ASST	5 cut(s)	17, 21, 60, 116, 141
SinI	GGWCC	1 cut(s)	207
SsiI	CCGC	2 cut(s)	63, 66
SspMI	CTAG	1 cut(s)	394
StyD4I	CCNGG	5 cut(s)	169, 188, 225, 235, 265
TaaI	ACNGT	1 cut(s)	280
TaiI	ACGT	2 cut(s)	17, 21
TaqI	TCGA	4 cut(s)	21, 45, 250, 357
TauI	GCSGC	1 cut(s)	68
TfiI	GAWTC	1 cut(s)	247
TscAI	CASTG	1 cut(s)	283
TseFI	GTSAC	2 cut(s)	139, 274
TseI	GCWGC	2 cut(s)	68, 90
Tsp45I	GTSAC	2 cut(s)	139, 274
TspDTI	ATGAA	1 cut(s)	167
TspRI	CASTG	1 cut(s)	283
VpaK11BI	GGWCC	1 cut(s)	207
XmnI	GAANNNNTTC	1 cut(s)	158
XspI	CTAG	1 cut(s)	394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.