pycom15g18280

PCI domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0002448
Physical Location & Seq
Forward (+)
12955563 .. 12957803
2241 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 777 bp
ATGAAAGTCTTTGGCGTTCTTGCTGGAAAAGGCCCGAAACGTGTTGGAGCATTATACGTCACTTGCCAGTTGTTTAAAGTTTACTTTAAGCTTGGTACAGTTCACCTTTGCCGCAGCGTCATAAGGAGCATTGAAACTGCGCGAATATTTGATTTTGAGGAATTCCCTAAGAGAGATAAGGTCACCTATATGTATTATACAGGTCGTCTGGAAGTTTTCAATGAAAATTTCCCCGCTGCTGATCAGAAATTATCATATGCCTTGAAGCATTGCAATCCTCAGCGTGAAGTAAATATAAGGATGATATTGAAGTATTTGATACCTGTGAAGCTTTCATTAGGCATCTTACCAAATGATTGGCTTCTGGAAAAGTATAACCTGGTTGAGTATAGGAATGTTGTACAAGCTCTAAAAAGAGGTGATCTTCGACTTCTTCGGCGTGCTCTTGAGGAGCATGAAGATCGGTTCTTAAGATCAGGTGTATATCTTGTCCTAGAGAAGCTAGAACTCCAAGTCTACCAGAGATTAATAAAGAAAATTTACTTCATTCAAAAGCAAAAGGACCCGGTTAAAGCTCACCAGCTGAAATTAGAAGTAATTGTTAAGGCTTTGAAATGGCTTGAGATAGCCATGGATGTCGATGAGGTGGAGTGCATAGTGGCCATATTAATATACAAAAATCTTGTAAAGGGATACTTCGCTCACAAGAGCAAAGTTGTGGTTTTGAGCAAGCAAGATCCTTTTCCTAAATTAAATGGAAAGCCTGTCAACTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000160 GO:0000956 GO:0000972 GO:0000973 GO:0002376 GO:0002520 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006354 GO:0006355 GO:0006366 GO:0006368 GO:0006401 GO:0006402 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007088 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0008298 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009987 GO:0010033 GO:0010466 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010564 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010941 GO:0010951 GO:0010965 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0016070 GO:0016071 GO:0016973 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019439 GO:0022622 GO:0023052 GO:0030071 GO:0030162 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031503 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032774 GO:0032870 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0034613 GO:0034641 GO:0034645 GO:0034654 GO:0034655 GO:0035556 GO:0042221 GO:0042886 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043488 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044270 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0045787 GO:0045861 GO:0045893 GO:0045931 GO:0045935 GO:0046483 GO:0046700 GO:0046907 GO:0048364 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048534 GO:0048536 GO:0048731 GO:0048856 GO:0050657 GO:0050658 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051028 GO:0051128 GO:0051168 GO:0051169 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051234 GO:0051236 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051276 GO:0051336 GO:0051346 GO:0051641 GO:0051649 GO:0051716 GO:0051726 GO:0051783 GO:0051983 GO:0052547 GO:0052548 GO:0060255 GO:0060548 GO:0060968 GO:0061013 GO:0065007 GO:0065008 GO:0065009 GO:0070390 GO:0070727 GO:0070887 GO:0071025 GO:0071027 GO:0071028 GO:0071033 GO:0071166 GO:0071310 GO:0071369 GO:0071426 GO:0071427 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0080090 GO:0090068 GO:0090231 GO:0090232 GO:0090266 GO:0090267 GO:0090304 GO:0097159 GO:0097659 GO:0099402 GO:1901360 GO:1901361 GO:1901362 GO:1901363 GO:1901575 GO:1901576 GO:1901976 GO:1901978 GO:1901987 GO:1901990 GO:1902099 GO:1902680 GO:1903311 GO:1903504 GO:1903506 GO:1903508 GO:1905818 GO:2000112 GO:2000116 GO:2000117 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PCI

Protein Analysis

259

Amino Acids

30.21

Weight (kDa)

9.67

Isoelectric Point (pI)

33.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCI PF01399 149 - 244 1e-08 PCI domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 516
AccII CGCG 1 cut(s) 142
AciI CCGC 2 cut(s) 112, 234
AclWI GGATC 1 cut(s) 731
AcoI YGGCCR 1 cut(s) 660
AcsI RAATTY 3 cut(s) 161, 226, 537
AfaI GTAC 2 cut(s) 97, 402
AflII CTTAAG 1 cut(s) 469
AflIII ACRYGT 1 cut(s) 40
AgsI TTSAA 6 cut(s) 134, 220, 265, 310, 551, 613
AjnI CCWGG 1 cut(s) 378
AluBI AGCT 6 cut(s) 91, 331, 407, 502, 575, 583
AluI AGCT 6 cut(s) 91, 331, 407, 502, 575, 583
Alw21I GWGCWC 1 cut(s) 445
AlwI GGATC 1 cut(s) 731
AoxI GGCC 2 cut(s) 31, 660
ApeKI GCWGC 2 cut(s) 114, 236
ApoI RAATTY 3 cut(s) 161, 226, 537
AseI ATTAAT 2 cut(s) 527, 668
AspLEI GCGC 1 cut(s) 142
AspS9I GGNCC 2 cut(s) 32, 562
AsuC2I CCSGG 1 cut(s) 566
AsuHPI GGTGA 4 cut(s) 95, 175, 431, 569
AvaII GGWCC 1 cut(s) 562
BalI TGGCCA 1 cut(s) 662
Bbv12I GWGCWC 1 cut(s) 445
BbvCI CCTCAGC 1 cut(s) 279
BbvI GCAGC 2 cut(s) 126, 223
BcgI CGANNNNNNTGC 2 cut(s) 443, 477
BciT130I CCWGG 1 cut(s) 380
BciVI GTATCC 1 cut(s) 686
BclI TGATCA 1 cut(s) 241
BcnI CCSGG 1 cut(s) 566
BfaI CTAG 2 cut(s) 494, 503
BfrI CTTAAG 1 cut(s) 469
BfuI GTATCC 1 cut(s) 686
BisI GCNGC 3 cut(s) 112, 115, 237
BlsI GCNGC 3 cut(s) 113, 116, 238
Bme1390I CCNGG 2 cut(s) 380, 566
Bme18I GGWCC 1 cut(s) 562
BmgT120I GGNCC 2 cut(s) 32, 562
BmiI GGNNCC 1 cut(s) 564
BmrFI CCNGG 2 cut(s) 380, 566
BmsI GCATC 1 cut(s) 351
Bpu10I CCTNAGC 1 cut(s) 279
BpuEI CTTGAG 2 cut(s) 467, 641
BpuMI CCSGG 1 cut(s) 566
BsaJI CCNNGG 1 cut(s) 630
Bse1I ACTGG 1 cut(s) 67
Bse3DI GCAATG 1 cut(s) 268
BseBI CCWGG 1 cut(s) 380
BseDI CCNNGG 1 cut(s) 630
BseGI GGATG 2 cut(s) 306, 640
BseMI GCAATG 1 cut(s) 268
BseMII CTCAG 1 cut(s) 293
BseNI ACTGG 1 cut(s) 67
BseRI GAGGAG 1 cut(s) 464
BseXI GCAGC 2 cut(s) 126, 223
Bsh1236I CGCG 1 cut(s) 142
BshFI GGCC 2 cut(s) 33, 662
BsiHKAI GWGCWC 1 cut(s) 445
BsiSI CCGG 1 cut(s) 566
BsnI GGCC 2 cut(s) 33, 662
Bsp1286I GDGCHC 1 cut(s) 445
Bsp1407I TGTACA 1 cut(s) 400
Bsp143I GATC 5 cut(s) 241, 421, 460, 473, 736
Bsp19I CCATGG 1 cut(s) 630
BspACI CCGC 2 cut(s) 112, 234
BspANI GGCC 2 cut(s) 33, 662
BspCNI CTCAG 1 cut(s) 292
BspFNI CGCG 1 cut(s) 142
BspLI GGNNCC 1 cut(s) 564
BspPI GGATC 1 cut(s) 731
BspTI CTTAAG 1 cut(s) 469
BsrDI GCAATG 1 cut(s) 268
BsrGI TGTACA 1 cut(s) 400
BsrI ACTGG 1 cut(s) 67
BssECI CCNNGG 1 cut(s) 630
BssMI GATC 5 cut(s) 241, 421, 460, 473, 736
BssT1I CCWWGG 1 cut(s) 630
Bst2UI CCWGG 1 cut(s) 380
Bst4CI ACNGT 1 cut(s) 100
BstAFI CTTAAG 1 cut(s) 469
BstAUI TGTACA 1 cut(s) 400
BstC8I GCNNGC 2 cut(s) 441, 731
BstDEI CTNAG 2 cut(s) 168, 279
BstDSI CCRYGG 1 cut(s) 630
BstEII GGTNACC 1 cut(s) 181
BstF5I GGATG 2 cut(s) 306, 640
BstFNI CGCG 1 cut(s) 142
BstHHI GCGC 1 cut(s) 142
BstKTI GATC 5 cut(s) 244, 424, 463, 476, 739
BstMBI GATC 5 cut(s) 241, 421, 460, 473, 736
BstNI CCWGG 1 cut(s) 380
BstPI GGTNACC 1 cut(s) 181
BstSCI CCNGG 2 cut(s) 378, 564
BstUI CGCG 1 cut(s) 142
BstV1I GCAGC 2 cut(s) 126, 223
BstX2I RGATCY 1 cut(s) 736
BstXI CCANNNNNNTGG 1 cut(s) 357
BstYI RGATCY 1 cut(s) 736
BsuI GTATCC 1 cut(s) 686
BsuRI GGCC 2 cut(s) 33, 662
BtgI CCRYGG 1 cut(s) 630
BtsCI GGATG 2 cut(s) 306, 640
Cac8I GCNNGC 2 cut(s) 441, 731
CfoI GCGC 1 cut(s) 142
Cfr13I GGNCC 2 cut(s) 32, 562
CseI GACGC 1 cut(s) 106
CsiI ACCWGGT 1 cut(s) 378
Csp6I GTAC 2 cut(s) 96, 401
CviAII CATG 2 cut(s) 455, 631
CviQI GTAC 2 cut(s) 96, 401
DdeI CTNAG 2 cut(s) 168, 279
DpnI GATC 5 cut(s) 243, 423, 462, 475, 738
DpnII GATC 5 cut(s) 241, 421, 460, 473, 736
DraI TTTAAA 1 cut(s) 76
EaeI YGGCCR 1 cut(s) 660
Eco130I CCWWGG 1 cut(s) 630
Eco47I GGWCC 1 cut(s) 562
Eco91I GGTNACC 1 cut(s) 181
EcoO109I RGGNCCY 1 cut(s) 562
EcoO65I GGTNACC 1 cut(s) 181
EcoRI GAATTC 1 cut(s) 161
EcoRII CCWGG 1 cut(s) 378
EcoT14I CCWWGG 1 cut(s) 630
ErhI CCWWGG 1 cut(s) 630
FaeI CATG 2 cut(s) 458, 634
FalI AAGNNNNNCTT 2 cut(s) 680, 712
FatI CATG 2 cut(s) 454, 630
FauI CCCGC 1 cut(s) 241
FauNDI CATATG 1 cut(s) 256
FbaI TGATCA 1 cut(s) 241
FblI GTMKAC 1 cut(s) 516
Fnu4HI GCNGC 3 cut(s) 112, 115, 237
FokI GGATG 2 cut(s) 313, 647
Fsp4HI GCNGC 3 cut(s) 112, 115, 237
FspBI CTAG 2 cut(s) 494, 503
GlaI GCGC 1 cut(s) 141
GluI GCNGC 3 cut(s) 112, 115, 237
HaeIII GGCC 2 cut(s) 33, 662
HapII CCGG 1 cut(s) 566
HgaI GACGC 1 cut(s) 106
HhaI GCGC 1 cut(s) 142
Hin1II CATG 2 cut(s) 458, 634
Hin6I GCGC 1 cut(s) 140
HinP1I GCGC 1 cut(s) 140
HincII GTYRAC 1 cut(s) 769
HindII GTYRAC 1 cut(s) 769
HindIII AAGCTT 2 cut(s) 89, 329
HpaII CCGG 1 cut(s) 566
HphI GGTGA 4 cut(s) 95, 175, 431, 569
Hpy166II GTNNAC 4 cut(s) 82, 103, 517, 769
Hpy188I TCNGA 1 cut(s) 246
Hpy188III TCNNGA 3 cut(s) 209, 365, 446
Hpy8I GTNNAC 4 cut(s) 82, 103, 517, 769
HpyCH4III ACNGT 1 cut(s) 100
HpyCH4IV ACGT 2 cut(s) 40, 57
HpyCH4V TGCA 2 cut(s) 273, 654
HpyF3I CTNAG 2 cut(s) 168, 279
HpySE526I ACGT 2 cut(s) 40, 57
Hsp92II CATG 2 cut(s) 458, 634
HspAI GCGC 1 cut(s) 140
Ksp22I TGATCA 1 cut(s) 241
Kzo9I GATC 5 cut(s) 241, 421, 460, 473, 736
LmnI GCTCC 3 cut(s) 47, 126, 451
Lsp1109I GCAGC 2 cut(s) 126, 223
LweI GCATC 1 cut(s) 351
MabI ACCWGGT 1 cut(s) 378
MaeI CTAG 2 cut(s) 494, 503
MaeII ACGT 2 cut(s) 40, 57
MaeIII GTNAC 2 cut(s) 58, 181
MalI GATC 5 cut(s) 243, 423, 462, 475, 738
MboI GATC 5 cut(s) 241, 421, 460, 473, 736
MboII GAAGA 3 cut(s) 416, 425, 470
MflI RGATCY 1 cut(s) 736
MhlI GDGCHC 1 cut(s) 445
MlsI TGGCCA 1 cut(s) 662
MluCI AATT 7 cut(s) 161, 226, 248, 537, 587, 597, 749
MluNI TGGCCA 1 cut(s) 662
MmeI TCCRAC 1 cut(s) 25
MnlI CCTC 5 cut(s) 151, 288, 410, 442, 637
Mox20I TGGCCA 1 cut(s) 662
MscI TGGCCA 1 cut(s) 662
MseI TTAA 8 cut(s) 75, 87, 470, 527, 570, 603, 668, 752
MslI CAYNNNNRTG 1 cut(s) 188
Msp20I TGGCCA 1 cut(s) 662
MspA1I CMGCKG 2 cut(s) 236, 583
MspCI CTTAAG 1 cut(s) 469
MspI CCGG 1 cut(s) 566
MspR9I CCNGG 2 cut(s) 380, 566
MvaI CCWGG 1 cut(s) 380
MvnI CGCG 1 cut(s) 142
NciI CCSGG 1 cut(s) 566
NcoI CCATGG 1 cut(s) 630
NdeI CATATG 1 cut(s) 256
NdeII GATC 5 cut(s) 241, 421, 460, 473, 736
NlaIII CATG 2 cut(s) 458, 634
NlaIV GGNNCC 1 cut(s) 564
NmuCI GTSAC 2 cut(s) 58, 181
PkrI GCNGC 3 cut(s) 113, 116, 238
PpuMI RGGWCCY 1 cut(s) 562
PshBI ATTAAT 2 cut(s) 527, 668
Psp5II RGGWCCY 1 cut(s) 562
Psp6I CCWGG 1 cut(s) 378
PspEI GGTNACC 1 cut(s) 181
PspGI CCWGG 1 cut(s) 378
PspN4I GGNNCC 1 cut(s) 564
PspPI GGNCC 2 cut(s) 32, 562
PspPPI RGGWCCY 1 cut(s) 562
PsuI RGATCY 1 cut(s) 736
PvuII CAGCTG 1 cut(s) 583
RsaI GTAC 2 cut(s) 97, 402
RsaNI GTAC 2 cut(s) 96, 401
RseI CAYNNNNRTG 1 cut(s) 188
SaqAI TTAA 8 cut(s) 75, 87, 470, 527, 570, 603, 668, 752
SatI GCNGC 3 cut(s) 112, 115, 237
Sau3AI GATC 5 cut(s) 241, 421, 460, 473, 736
Sau96I GGNCC 2 cut(s) 32, 562
ScrFI CCNGG 2 cut(s) 380, 566
SduI GDGCHC 1 cut(s) 445
SexAI ACCWGGT 1 cut(s) 378
SfaNI GCATC 1 cut(s) 351
SinI GGWCC 1 cut(s) 562
SmiMI CAYNNNNRTG 1 cut(s) 188
SmlI CTYRAG 3 cut(s) 446, 469, 620
SmoI CTYRAG 3 cut(s) 446, 469, 620
Sse9I AATT 7 cut(s) 161, 226, 248, 537, 587, 597, 749
SsiI CCGC 2 cut(s) 112, 234
SspI AATATT 1 cut(s) 147
SspMI CTAG 2 cut(s) 494, 503
StyD4I CCNGG 2 cut(s) 378, 564
StyI CCWWGG 1 cut(s) 630
TaaI ACNGT 1 cut(s) 100
TaiI ACGT 2 cut(s) 43, 60
TaqI TCGA 2 cut(s) 427, 639
TasI AATT 7 cut(s) 161, 226, 248, 537, 587, 597, 749
TatI WGTACW 1 cut(s) 400
TauI GCSGC 1 cut(s) 114
Tru1I TTAA 8 cut(s) 75, 87, 470, 527, 570, 603, 668, 752
Tru9I TTAA 8 cut(s) 75, 87, 470, 527, 570, 603, 668, 752
TseFI GTSAC 2 cut(s) 58, 181
TseI GCWGC 2 cut(s) 114, 236
Tsp45I GTSAC 2 cut(s) 58, 181
TspDTI ATGAA 5 cut(s) 17, 237, 324, 471, 535
Vha464I CTTAAG 1 cut(s) 469
VpaK11BI GGWCC 1 cut(s) 562
VspI ATTAAT 2 cut(s) 527, 668
XapI RAATTY 3 cut(s) 161, 226, 537
XmiI GTMKAC 1 cut(s) 516
XspI CTAG 2 cut(s) 494, 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.